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ViBE-Z: The Virtual Brain Explorer for Zebrafish
Abbreviation:ViBE-Z
General Information
ViBE-Z, the Virtual Brain Explorer for Zebrafish is an imaging and image analysis framework for virtual colocalization studies in larval zebrafish brains, currently available for 72hpf, 48hpf and 96hpf old larvae. ViBE-Z contains a database with precisely aligned gene expression patterns (1um 3 resolution), an anatomical atlas, and a software. This software creates high-quality data sets by fusing multiple confocal microscopic image stacks, and aligns these data sets to the standard larva.
How to cite this record
FAIRsharing.org: ViBE-Z; ViBE-Z: The Virtual Brain Explorer for Zebrafish; DOI: https://doi.org/10.25504/FAIRsharing.xypv6g;
Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Aug 13 2020 3:58 p.m.
Record added: Aug. 3, 2016, 12:18 p.m.
Record updated:
Nov. 21, 2018, 12:08 p.m. by The FAIRsharing Team.
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Edits to 'https://fairsharing.org/FAIRsharing.xypv6g' by 'The FAIRsharing Team' at 12:08, 21 Nov 2018 (not approved):
'domains' has been modified:
Before:
Anatomy
Biological imaging
Gene expression
Microscopy
After:
Anatomy
Biological imaging
Gene expression
Microscopy
Neuroimaging
Added:
Neuroimaging
Removed:
'description' has been modified:
Before: ViBE-Z, the Virtual Brain Explorer for Zebrafish is an imaging and image analysis framework for virtual colocalization studies in larval zebrafish brains, currently available for 72hpf, 48hpf and 96hpf old larvae. ViBE-Z contains a database with precisely aligned gene expression patterns (1um 3 resolution), an anatomical atlas, and a software. This software creates high-quality data sets by fusing multiple confocal microscopic image stacks, and aligns these data sets to the standard larva.
After: ViBE-Z, the Virtual Brain Explorer for Zebrafish is an imaging and image analysis framework for virtual colocalization studies in larval zebrafish brains, currently available for 72hpf, 48hpf and 96hpf old larvae. ViBE-Z contains a database with precisely aligned gene expression patterns (1um 3 resolution), an anatomical atlas, and a software. This software creates high-quality data sets by fusing multiple confocal microscopic image stacks, and aligns these data sets to the standard larva.
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Publications
ViBE-Z: a framework for 3D virtual colocalization analysis in zebrafish larval brains.
Ronneberger O,Liu K,Rath M,Ruebeta D,Mueller T,Skibbe H,Drayer B,Schmidt T,Filippi A,Nitschke R,Brox T,Burkhardt H,Driever W
Nat Methods 2012
View Paper (PubMed)
View Publication
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