databases > DOI:10.25504/FAIRsharing.xypv6g

ready ViBE-Z: The Virtual Brain Explorer for Zebrafish

Abbreviation:ViBE-Z

General Information
ViBE-Z, the Virtual Brain Explorer for Zebrafish is an imaging and image analysis framework for virtual colocalization studies in larval zebrafish brains, currently available for 72hpf, 48hpf and 96hpf old larvae. ViBE-Z contains a database with precisely aligned gene expression patterns (1um 3 resolution), an anatomical atlas, and a software. This software creates high-quality data sets by fusing multiple confocal microscopic image stacks, and aligns these data sets to the standard larva.

Homepage http://vibez.informatik.uni-freiburg.de

Developed in Germany

Created in 2013

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How to cite this record FAIRsharing.org: ViBE-Z; ViBE-Z: The Virtual Brain Explorer for Zebrafish; DOI: https://doi.org/10.25504/FAIRsharing.xypv6g; Last edited: Feb. 22, 2018, 3:01 p.m.; Last accessed: Sep 22 2018 7:03 a.m.


Record added: Aug. 3, 2016, 12:18 p.m.
Record updated: Feb. 22, 2018, 3:01 p.m. by The FAIRsharing Team (automatic update).



In Collections
Euro-BioImaging

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Additional Information

Contact Olaf Ronneberger

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Other Web Services

Web interface and downloadable plugins http://vibez.informatik.uni-freiburg.de/#software


Publications

ViBE-Z: a framework for 3D virtual colocalization analysis in zebrafish larval brains.

Ronneberger O,Liu K,Rath M,Ruebeta D,Mueller T,Skibbe H,Drayer B,Schmidt T,Filippi A,Nitschke R,Brox T,Burkhardt H,Driever W
Nat Methods 2012

View Paper (PubMed) View Publication

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