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ready ViBE-Z: The Virtual Brain Explorer for Zebrafish


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ViBE-Z, the Virtual Brain Explorer for Zebrafish is an imaging and image analysis framework for virtual colocalization studies in larval zebrafish brains, currently available for 72hpf, 48hpf and 96hpf old larvae. ViBE-Z contains a database with precisely aligned gene expression patterns (1um 3 resolution), an anatomical atlas, and a software. This software creates high-quality data sets by fusing multiple confocal microscopic image stacks, and aligns these data sets to the standard larva.


Countries that developed this resource Germany

Created in 2013

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How to cite this record ViBE-Z; ViBE-Z: The Virtual Brain Explorer for Zebrafish; DOI:; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Oct 19 2021 2:17 p.m.

Record added: Aug. 3, 2016, 12:18 p.m.
Record updated: Nov. 21, 2018, 12:08 p.m. by The FAIRsharing Team.

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ViBE-Z: a framework for 3D virtual colocalization analysis in zebrafish larval brains.

Ronneberger O,Liu K,Rath M,Ruebeta D,Mueller T,Skibbe H,Drayer B,Schmidt T,Filippi A,Nitschke R,Brox T,Burkhardt H,Driever W
Nat Methods 2012

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