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Genomic Epidemiology Ontology

Abbreviation: GenEpiO

General Information

The Genomic Epidemiology Ontology (GenEpiO) covers vocabulary necessary to identify, document and research food-borne pathogens, infectious disease surveillance and outbreak investigations. This includes descriptions of the genomics, laboratory, clinical and epidemiological contextual information required to support data sharing and integration for food-borne infectious disease surveillance and outbreak investigations.

Homepage https://genepio.org/

Countries that developed this resource Worldwide

Created in 2017

Taxonomic range

All

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: GenEpiO; Genomic Epidemiology Ontology; DOI: https://doi.org/10.25504/FAIRsharing.y1mmbv; Last edited: March 24, 2021, 8:50 p.m.; Last accessed: Sep 25 2021 4:18 a.m.

This record is maintained by Hsiao Lab (damion)

Record added: Oct. 24, 2017, 9:41 a.m.
Record updated: March 24, 2021, 2:45 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.y1mmbv' by 'The FAIRsharing Team' at 14:38, 24 Mar 2021 (approved):

	'organizations' has been modified:
		Before:
		After:
			GenEpiO Consortium|https://genepio.org/home/consortium/|Maintains
		Added:
			GenEpiO Consortium|https://genepio.org/home/consortium/|Maintains
		Removed:

	'supportLinks' has been modified:
		Before:
		After:
			FAQ|https://genepio.org/faq/
			email|info@genepio.org
			online documentation|https://genepio.org/wp-content/uploads/2016/10/GenEpiOConsortiumSlideDeckSept2016.pdf
			online documentation|https://github.com/GenEpiO/genepio
		Added:
			FAQ|https://genepio.org/faq/
			email|info@genepio.org
			online documentation|https://genepio.org/wp-content/uploads/2016/10/GenEpiOConsortiumSlideDeckSept2016.pdf
			online documentation|https://github.com/GenEpiO/genepio
		Removed:

	'name' has been modified:
		Before: GenEpiO
		After: Genomic Epidemiology Ontology

	'countries' has been modified:
		Before:
		After:
			Worldwide
		Added:
			Worldwide
		Removed:

	'licences' has been modified:
		Before:
		After:
			Creative Commons Attribution 3.0 Unported (CC BY 3.0)|https://creativecommons.org/licenses/by/3.0/|Data
		Added:
			Creative Commons Attribution 3.0 Unported (CC BY 3.0)|https://creativecommons.org/licenses/by/3.0/|Data
		Removed:

	'onto_disciplines' has been modified:
		Before:
		After:
			Epidemiology
			Genomics
		Added:
			Epidemiology
			Genomics
		Removed:

	'onto_domains' has been modified:
		Before:
		After:
			food
			genome
			pathogen
		Added:
			food
			genome
			pathogen
		Removed:

	'related_standards' has been modified:
		Before:
		After:
			FoodOn
			Apollo-SV
			Chemical Entities of Biological Interest
			Chemical Methods Ontology
			Disease Ontology
			Experimental Factor Ontology
			Environment Ontology
			eagle-i Research Resource Ontology
			Gazetteer
			Geographical Entity Ontology
			Human Phenotype Ontology
			Infectious Disease Ontology Core
			NCBI Taxonomy
			NCI Thesaurus
			Ontology for Biomedical Investigations
			Phenotypic QualiTy Ontology
			OBO Relations Ontology
			Sequence Ontology
			Statistics Ontology
			UBER anatomy ONtology
			Units Ontology
			Web Ontology Language
		Added:
			FoodOn
			Apollo-SV
			Chemical Entities of Biological Interest
			Chemical Methods Ontology
			Disease Ontology
			Experimental Factor Ontology
			Environment Ontology
			eagle-i Research Resource Ontology
			Gazetteer
			Geographical Entity Ontology
			Human Phenotype Ontology
			Infectious Disease Ontology Core
			NCBI Taxonomy
			NCI Thesaurus
			Ontology for Biomedical Investigations
			Phenotypic QualiTy Ontology
			OBO Relations Ontology
			Sequence Ontology
			Statistics Ontology
			UBER anatomy ONtology
			Units Ontology
			Web Ontology Language
		Removed:

	'miriam_id' has been modified:
		Before: None
		After: 

	'dataProcesses' has been modified:
		Before:
		After:
			Browse in OLS, data access, https://www.ebi.ac.uk/ols/ontologies/genepio
			Download, data release, http://purl.obolibrary.org/obo/genepio.owl
		Added:
			Browse in OLS, data access, https://www.ebi.ac.uk/ols/ontologies/genepio
			Download, data release, http://purl.obolibrary.org/obo/genepio.owl
		Removed:

	'shortname' has been modified:
		Before: GENEPIO
		After: GenEpiO

	'homepage' has been modified:
		Before: http://genepio.org
		After: https://genepio.org/

	'description' has been modified:
		Before: The Genomic Epidemiology Ontology (GenEpiO) covers vocabulary necessary to identify, document and research foodborne pathogens and associated outbreaks.
		After: The Genomic Epidemiology Ontology (GenEpiO) covers vocabulary necessary to identify, document and research food-borne pathogens, infectious disease surveillance and outbreak investigations. This includes descriptions of the genomics, laboratory, clinical and epidemiological contextual information required to support data sharing and integration for food-borne infectious disease surveillance and outbreak investigations.

Support

General

FAQ	FAQ
support email	General Contact
online documentation	About GenEpiO (Presentation)
online documentation	GitHub Project

Additional Information

Contact

Damion Dooley

External Links

OBO	http://obofoundry.org/ontology/genepio.html

Tools

No tools defined

Schemas

No XSD schemas defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Creative Commons Attribution 3.0 Unported (CC BY 3.0)

Data Release

Download

http://purl.obolibrary.org/obo/genepio.owl

Data Access

Browse in OLS

https://www.ebi.ac.uk/ols/ontologies/genepio

Publications

No publications available

GenEpiO Ontology Display

View in OBO Foundry.

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

Web Ontology Language

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases (0)

No Related Databases

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by Hsiao Lab (damion)

Maintains

GenEpiO Consortium (Consortium)

Genomic Epidemiology Ontology

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