Small Molecule Pathway Database

Abbreviation:SMPDB

General Information

The Small Molecule Pathway Database (SMPDB) contains small molecule pathways found in humans, which are presented visually. All SMPDB pathways include information on the relevant organs, subcellular compartments, protein cofactors, protein locations, metabolite locations, chemical structures and protein quaternary structures. Accompanying data includes detailed descriptions and references, providing an overview of the pathway, condition or processes depicted in each diagram.

Homepage http://www.smpdb.ca/

Developed in Canada

Created in 2009

Taxonomic range

Scope and data types

How to cite this record FAIRsharing.org: SMPDB; Small Molecule Pathway Database; DOI: https://doi.org/10.25504/FAIRsharing.y1zyaq; Last edited: Feb. 22, 2018, 2:49 p.m.; Last accessed: Sep 24 2018 10:07 a.m.

Record updated: Jan. 11, 2018, 7:26 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.y1zyaq' by 'The FAIRsharing Team' at 19:26, 11 Jan 2018 (approved):

	'domains' has been modified:
		Before:
			Chemical entity|material|http://purl.obolibrary.org/obo/CHEBI_24431
			Life Science|domain|http://www.fairsharing.org/ontology/SRAO_0000069
			Metabolite|material|http://purl.obolibrary.org/obo/CHEBI_25212
			Molecular interactions|pathways and networks||http://edamontology.org/topic_0602
		After:
			Chemical entity|material|http://purl.obolibrary.org/obo/CHEBI_24431
			Life Science|domain|http://www.fairsharing.org/ontology/SRAO_0000069
			Metabolite|material|http://purl.obolibrary.org/obo/CHEBI_25212
			Small molecule|material|http://purl.obolibrary.org/obo/MI_0328
			Pathway model|None|http://purl.obolibrary.org/obo/PW_0000001
			Chemical structure||http://edamontology.org/data_1712
			Protein structure||http://edamontology.org/data_1460
		Added:
			Small molecule|material|http://purl.obolibrary.org/obo/MI_0328
			Pathway model|None|http://purl.obolibrary.org/obo/PW_0000001
			Chemical structure||http://edamontology.org/data_1712
			Protein structure||http://edamontology.org/data_1460
		Removed:
			Molecular interactions|pathways and networks||http://edamontology.org/topic_0602

Edits to 'https://fairsharing.org/FAIRsharing.y1zyaq' by 'The FAIRsharing Team' at 12:07, 08 Dec 2016 (approved):

	'contactName' has been modified:
		Before:
			
		After:
			David Wishart
		Added:
		Removed:

In Collections

Chemistry

Support

General

contact form	http://feedback.wishartlab.com/?site=sma ...
online documentation	http://smpdb.ca/legend
twitter	@WishartLab

Additional Information

Contact	David Wishart
Identifiers.org	MIR:00000104

Tools

Blast

http://smpdb.ca/search/sequence

Access / Retrieve Data

Conditions of Use

Data Access

Download	http://www.smpdb.ca/downloads
Search	http://smpdb.ca/structures/search/compounds/structure
Browse	http://smpdb.ca/view
Advanced search	http://smpdb.ca/smp_map

Publications

SMPDB: The Small Molecule Pathway Database.

Frolkis A., Knox C., Lim E., Jewison T., Law V., Hau DD., Liu P., Gautam B., Ly S., Guo AC., Xia J., Liang Y., Shrivastava S., Wishart DS.,
Nucleic Acids Res. 2010

View Paper (PubMed) View Publication

SMPDB 2.0: big improvements to the Small Molecule Pathway Database.

Jewison T,Su Y,Disfany FM,Liang Y,Knox C,Maciejewski A,Poelzer J,Huynh J,Zhou Y,Arndt D,Djoumbou Y,Liu Y,Deng L,Guo AC,Han B,Pon A,Wilson M,Rafatnia S,Liu P,Wishart DS
Nucleic Acids Res 2013

View Paper (PubMed) View Publication

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Credit

Record Maintainer

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Funds

Canadian Institutes for Health Research, Ottawa, ON, Canada (Government body)

Maintains

Genome Alberta, Alberta, Canada (Government body)

Small Molecule Pathway Database

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