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Drosophila anatomy ontology

Abbreviation: FBbt

General Information

An ontology of the anatomy of Drosophila melanogaster. It can be used for annotation and classification of data related to Drosophila anatomy, such as gene expression, phenotype and images. It was originally developed by FlyBase, who continue to maintain it and use it for curation.

Homepage http://flybase.org/vocabularies

Countries that developed this resource United Kingdom

Taxonomic range

Drosophila melanogaster

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: FBbt; Drosophila anatomy ontology; DOI: https://doi.org/10.25504/FAIRsharing.y2qkst; Last edited: June 15, 2021, 2:06 p.m.; Last accessed: Sep 25 2021 4:02 a.m.

This record is maintained by ClarePilgrim ORCID

Record updated: June 15, 2021, 2:05 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.y2qkst' by 'The FAIRsharing Team' at 14:05, 15 Jun 2021 (approved):

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Edits to 'https://fairsharing.org/FAIRsharing.y2qkst' by 'ClarePilgrim' at 14:42, 14 Jun 2021 (approved):

	'shortname' has been modified:
		Before: FB-BT
		After: FBbt

	'description' has been modified:
		Before: A structured controlled vocabulary of the anatomy of Drosophila melanogaster. These ontologies are query-able reference sources for information on Drosophila anatomy and developmental stages. They also provide controlled vocabularies for use in annotation and classification of data related to Drosophila anatomy, such as gene expression, phenotype and images. They were originally developed by FlyBase, who continue to maintain them and have used them for over 200,000 annotations of phenotypes and expression.
		After: An ontology of the anatomy of Drosophila melanogaster. It can be used for annotation and classification of data related to Drosophila anatomy, such as gene expression, phenotype and images. It was originally developed by FlyBase, who continue to maintain it and use it for curation.

	'name' has been modified:
		Before: Drosophila gross anatomy
		After: Drosophila anatomy ontology

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			United Kingdom
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			United Kingdom

Edits to 'https://fairsharing.org/FAIRsharing.y2qkst' by 'ClarePilgrim' at 09:39, 12 Dec 2019 (approved):

	'contactEmail' has been modified:
		Before: mmc46@gen.cam.ac.uk
		After: cp390@cam.ac.uk

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		Before: Marta Mesquita da Costa
		After: Clare Pilgrim

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		Before: 0000-0001-5948-3092
		After: 0000-0002-1373-1705

Edits to 'https://fairsharing.org/FAIRsharing.y2qkst' by 'The FAIRsharing Team' at 18:14, 02 Dec 2019 (approved):

	'onto_disciplines' has been modified:
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			Anatomy
			Life Science
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			Anatomy
			Developmental Biology
			Life Science
			Ontology and Terminology
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			Developmental Biology
			Ontology and Terminology
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			gene expression
			image
			life cycle stage
			phenotype
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			gene expression
			image
			life cycle stage
			phenotype
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Edits to 'https://fairsharing.org/FAIRsharing.y2qkst' by 'The FAIRsharing Team' at 16:59, 06 Aug 2019 (approved):

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	'homepage' has been modified:
		Before: http://purl.bioontology.org/ontology/FB-BT
		After: http://flybase.org/vocabularies

Support

General

help	https://github.com/FlyBase/drosophila-an ...
online documentation	https://github.com/FlyBase/drosophila-an ...

Additional Information

Contact

Clare Pilgrim ORCID

External Links

Bioportal	http://bioportal.bioontology.org/ontologies/FB-BT
OBO	http://obofoundry.org/ontology/fbbt.html

Tools

No tools defined

Schemas

No XSD schemas defined

Access / Retrieve Data

Conditions of Use

Data Access

Download

https://github.com/FlyBase/drosophila-anatomy-developmental-ontology/w ...

Publications

The Drosophila anatomy ontology

Costa M., Reeve S., Grumbling G., Osumi-Sutherland D.
Journal of Biomedical Semantics 2013

View Paper (PubMed) View Publication

A strategy for building neuro-anatomy ontologies

Osumi-Sutherland D., Reeve S., Mungall C., Ruttenberg A. Neuhaus F, Jefferis G.S.X.E, Armstrong J.D.
Bioinformatics 2012

View Paper (PubMed) View Publication

The Virtual Fly Brain Browser and Query Interface

Milyaev N., Osumi-Sutherland D., Reeve S., Burton N., Baldock R.A., Armstrong J.D.
Bioinformatics 2012

View Paper (PubMed) View Publication

FlyBase: anatomical data, images and queries

Grumbling G., Strelets V., The FlyBase Consortium
Nucleic Acids Research 2006

View Paper (PubMed) View Publication

FB-BT Ontology Display

View in BioPortal.

Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.

View in OBO Foundry.

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases (6)

FlyBase
Genetic, genomic and molecular information pertaining to the model organism Drosophila melanogaster and related sequences. This database also contains information relating to human disease models in Drosophila, the use of transgenic constructs containing sequence from other organisms in Drosophila, and information on where to buy Drosophila strains and constructs.

Bgee DataBase for Gene Expression Evolution
Bgee is a database to retrieve and compare gene expression patterns in multiple animal species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data). Bgee is based exclusively on curated "normal", healthy, expression data (e.g., no gene knock-out, no treatment, no disease), to provide a comparable reference of normal gene expression. Bgee produces calls of presence/absence of expression, and of differential over-/under-expression, integrated along with information of gene orthology, and of homology between organs. This allows comparisons of expression patterns between species.

Virtual Fly Brain
VFB is an interactive tool for neurobiologists to explore the detailed neuroanatomy, neuron connectivity and gene expression of Drosophila melanogaster. Our goal is to make it easier for researchers to find relevant anatomical information and reagents. We integrate the neuroanatomical and expression data from the published literature, as well as image datasets onto the same brain template, making it possible to run cross searches, find similar neurons and compare image data on our 3D Viewer.

Alliance of Genome Resources
The primary mission of the Alliance of Genome Resources (the Alliance) is to develop and maintain sustainable genome information resources that facilitate the use of diverse model organisms in understanding the genetic and genomic basis of human biology, health and disease.

OBO Foundry
The Open Biological and Biomedical Ontology (OBO) Foundry is a collective of ontology developers that are committed to collaboration and adherence to shared principles. The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. To achieve this, OBO Foundry participants voluntarily adhere to and contribute to the development of an evolving set of principles including open use, collaborative development, non-overlapping and strictly-scoped content, and common syntax and relations, based on ontology models that work well, such as the Gene Ontology (GO). The OBO Foundry is overseen by an Operations Committee with Editorial, Technical and Outreach working groups.

Regulatory Element Database for Drosophila
REDfly is a curated collection of known Drosophila transcriptional cis-regulatory modules (CRMs) and transcription factor binding sites (TFBSs). REDfly seeks to include all experimentally verified fly regulatory elements along with their DNA sequence, their associated genes, and the expression patterns they direct.

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Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by ClarePilgrim ORCID

Funds

Biotechnology and Biological Sciences Research Council (BBSRC), UK (Government body)
National Human Genome Research Institute (NHGRI), Bethesda, MD, USA (Government body)
The Wellcome Trust, UK (Charitable foundation)

Maintains

FBbt administrators (FlyBase) (Consortium)
FlyBase administrators (Consortium)
Virtual Fly Brain (Consortium)

Grant Number(s)

BB/G02233X/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)

Drosophila anatomy ontology

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