Drosophila anatomy ontology
How to cite this record FAIRsharing.org: FBbt; Drosophila anatomy ontology; DOI: https://doi.org/10.25504/FAIRsharing.y2qkst; Last edited: June 15, 2021, 2:06 p.m.; Last accessed: Jan 24 2022 10:22 a.m.
Record updated: June 15, 2021, 2:05 p.m. by The FAIRsharing Team.
Edits to 'https://fairsharing.org/FAIRsharing.y2qkst' by 'The FAIRsharing Team' at 14:05, 15 Jun 2021 (approved): 'countries' has been modified: Before: After: United Kingdom Added: United Kingdom Removed:
Edits to 'https://fairsharing.org/FAIRsharing.y2qkst' by 'ClarePilgrim' at 14:42, 14 Jun 2021 (approved): 'shortname' has been modified: Before: FB-BT After: FBbt 'description' has been modified: Before: A structured controlled vocabulary of the anatomy of Drosophila melanogaster. These ontologies are query-able reference sources for information on Drosophila anatomy and developmental stages. They also provide controlled vocabularies for use in annotation and classification of data related to Drosophila anatomy, such as gene expression, phenotype and images. They were originally developed by FlyBase, who continue to maintain them and have used them for over 200,000 annotations of phenotypes and expression. After: An ontology of the anatomy of Drosophila melanogaster. It can be used for annotation and classification of data related to Drosophila anatomy, such as gene expression, phenotype and images. It was originally developed by FlyBase, who continue to maintain it and use it for curation. 'name' has been modified: Before: Drosophila gross anatomy After: Drosophila anatomy ontology 'countries' has been modified: Before: United Kingdom After: Added: Removed: United Kingdom
Edits to 'https://fairsharing.org/FAIRsharing.y2qkst' by 'ClarePilgrim' at 09:39, 12 Dec 2019 (approved): 'contactEmail' has been modified: Before: email@example.com After: firstname.lastname@example.org 'contact' has been modified: Before: Marta Mesquita da Costa After: Clare Pilgrim 'contactORCID' has been modified: Before: 0000-0001-5948-3092 After: 0000-0002-1373-1705
Edits to 'https://fairsharing.org/FAIRsharing.y2qkst' by 'The FAIRsharing Team' at 18:14, 02 Dec 2019 (approved): 'onto_disciplines' has been modified: Before: Anatomy Life Science After: Anatomy Developmental Biology Life Science Ontology and Terminology Added: Developmental Biology Ontology and Terminology Removed: 'dataProcesses' has been modified: Before: After: Download Added: Download Removed: 'onto_domains' has been modified: Before: After: gene expression image life cycle stage phenotype Added: gene expression image life cycle stage phenotype Removed:
Edits to 'https://fairsharing.org/FAIRsharing.y2qkst' by 'The FAIRsharing Team' at 16:59, 06 Aug 2019 (approved): 'miriam_id' has been modified: Before: None After: 'homepage' has been modified: Before: http://purl.bioontology.org/ontology/FB-BT After: http://flybase.org/vocabularies
No XSD schemas defined
Conditions of Use
The Drosophila anatomy ontology
Costa M., Reeve S., Grumbling G., Osumi-Sutherland D.
Journal of Biomedical Semantics 2013
A strategy for building neuro-anatomy ontologies
Osumi-Sutherland D., Reeve S., Mungall C., Ruttenberg A. Neuhaus F, Jefferis G.S.X.E, Armstrong J.D.
The Virtual Fly Brain Browser and Query Interface
Milyaev N., Osumi-Sutherland D., Reeve S., Burton N., Baldock R.A., Armstrong J.D.
No guidelines defined
Models and Formats
No syntax standards defined
No identifier schema standards defined
No metrics standards defined
Genetic, genomic and molecular information pertaining to the model organism Drosophila melanogaster and related sequences. This database also contains information relating to human disease models in Drosophila, the use of transgenic constructs containing sequence from other organisms in Drosophila, and information on where to buy Drosophila strains and constructs.
Bgee DataBase for Gene Expression Evolution
Bgee is a database to retrieve and compare gene expression patterns in multiple animal species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data). Bgee is based exclusively on curated "normal", healthy, expression data (e.g., no gene knock-out, no treatment, no disease), to provide a comparable reference of normal gene expression. Bgee produces calls of presence/absence of expression, and of differential over-/under-expression, integrated along with information of gene orthology, and of homology between organs. This allows comparisons of expression patterns between species.
Virtual Fly Brain
VFB is an interactive tool for neurobiologists to explore the detailed neuroanatomy, neuron connectivity and gene expression of Drosophila melanogaster. Our goal is to make it easier for researchers to find relevant anatomical information and reagents. We integrate the neuroanatomical and expression data from the published literature, as well as image datasets onto the same brain template, making it possible to run cross searches, find similar neurons and compare image data on our 3D Viewer.
Alliance of Genome Resources
The primary mission of the Alliance of Genome Resources (the Alliance) is to develop and maintain sustainable genome information resources that facilitate the use of diverse model organisms in understanding the genetic and genomic basis of human biology, health and disease.
The Open Biological and Biomedical Ontology (OBO) Foundry is a collective of ontology developers that are committed to collaboration and adherence to shared principles. The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. To achieve this, OBO Foundry participants voluntarily adhere to and contribute to the development of an evolving set of principles including open use, collaborative development, non-overlapping and strictly-scoped content, and common syntax and relations, based on ontology models that work well, such as the Gene Ontology (GO). The OBO Foundry is overseen by an Operations Committee with Editorial, Technical and Outreach working groups.
Regulatory Element Database for Drosophila
REDfly is a curated collection of known Drosophila transcriptional cis-regulatory modules (CRMs) and transcription factor binding sites (TFBSs). REDfly seeks to include all experimentally verified fly regulatory elements along with their DNA sequence, their associated genes, and the expression patterns they direct.
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Biotechnology and Biological Sciences Research Council (BBSRC), UK (Government body)
National Human Genome Research Institute (NHGRI), Bethesda, MD, USA (Government body)
The Wellcome Trust, UK (Charitable foundation)
FBbt administrators (FlyBase) (Consortium)
FlyBase administrators (Consortium)
Virtual Fly Brain (Consortium)
BB/G02233X/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)