PhenX Phenotypic Terms

Abbreviation: PhenX

General Information

Standard measures related to complex diseases, phenotypic traits and environmental exposures.

Homepage https://www.phenx.org/

Countries that developed this resource United States

Created in 2012

Taxonomic range

Homo sapiens

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: PhenX; PhenX Phenotypic Terms; DOI: https://doi.org/10.25504/FAIRsharing.y5jcwa; Last edited: Aug. 13, 2019, 4:35 p.m.; Last accessed: Sep 22 2019 5:33 a.m.

This record is maintained by patwest

Record updated: June 21, 2019, 3:14 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.y5jcwa' by 'The FAIRsharing Team' at 15:14, 21 Jun 2019 (approved):

	'supportLinks' has been modified:
		Before:
		After:
			contact form|https://www.phenxtoolkit.org/about/contact-form
		Added:
			contact form|https://www.phenxtoolkit.org/about/contact-form
		Removed:

	'contactORCID' has been modified:
		Before: 0000-0002-6099-2190
		After: 

	'related_standards' has been modified:
		Before:
		After:
			Sickle Cell Disease Ontology
		Added:
			Sickle Cell Disease Ontology
		Removed:

	'dataProcesses' has been modified:
		Before:
		After:
			release
			download
			browse
			advanced search
			dbGaP Variable Search
		Added:
			release
			download
			browse
			advanced search
			dbGaP Variable Search
		Removed:

	'contactEmail' has been modified:
		Before: yingqin@rti.org
		After: chamilton@rti.org

	'contact' has been modified:
		Before: Ying Qin
		After: Carol M. Hamilton

	'publications' has been modified:
		Before:
		After:
			PhenX: a toolkit for interdisciplinary genetics research.|Stover PJ,Harlan WR,Hammond JA,Hendershot T,Hamilton CM|Curr Opin Lipidol|2010
			The PhenX Toolkit: get the most from your measures.|Hamilton CM,Strader LC,Pratt JG,Maiese D,Hendershot T,Kwok RK,Hammond JA,Huggins W,Jackman D,Pan H,Nettles DS,Beaty TH,Farrer LA,Kraft P,Marazita ML,Ordovas JM,Pato CN,Spitz MR,Wagener D,Williams M,Junkins HA,Harlan WR,Ramos EM,Haines J|Am J Epidemiol|2011
			PhenX measures for phenotyping rare genetic conditions.|Phillips M,Grant T,Giampietro P,Bodurtha J,Valdez R,Maiese DR,Hendershot T,Terry SF,Hamilton CM|Genet Med|2017
		Added:
			PhenX: a toolkit for interdisciplinary genetics research.|Stover PJ,Harlan WR,Hammond JA,Hendershot T,Hamilton CM|Curr Opin Lipidol|2010
			The PhenX Toolkit: get the most from your measures.|Hamilton CM,Strader LC,Pratt JG,Maiese D,Hendershot T,Kwok RK,Hammond JA,Huggins W,Jackman D,Pan H,Nettles DS,Beaty TH,Farrer LA,Kraft P,Marazita ML,Ordovas JM,Pato CN,Spitz MR,Wagener D,Williams M,Junkins HA,Harlan WR,Ramos EM,Haines J|Am J Epidemiol|2011
			PhenX measures for phenotyping rare genetic conditions.|Phillips M,Grant T,Giampietro P,Bodurtha J,Valdez R,Maiese DR,Hendershot T,Terry SF,Hamilton CM|Genet Med|2017
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.y5jcwa' by 'The FAIRsharing Team' at 14:49, 21 Jun 2019 (approved):

	'organizations' has been modified:
		Before:
			RTI International|https://www.rti.org|Maintains
			National Institute on Drug Abuse (NIDA), Bethesda, MD, USA|http://www.drugabuse.gov/|Funds
			National Human Genome Research Institute (NHGRI), Bethesda, MD, USA|http://www.genome.gov/|Funds
		After:
			National Institute on Drug Abuse (NIDA), Bethesda, MD, USA|http://www.drugabuse.gov/|Funds
			National Human Genome Research Institute (NHGRI), Bethesda, MD, USA|http://www.genome.gov/|Funds
			RTI International|https://www.rti.org|Maintains
			Office of Behavioral and Social Sciences Research, NIH, USA|https://obssr.od.nih.gov|Funds
			National Institute of Mental Health (NIMH), Bethesda, MD, USA|https://www.nimh.nih.gov|Funds
			National Heart, Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, MD, USA|http://www.nhlbi.nih.gov/|Funds
			National Institute on Minority Health and Health Disparities (NIMHD), National Institutes of Health (NIH), Bethesda, MD, USA|https://www.nimhd.nih.gov/|Funds
			Tobacco Regulatory Science Program, National Institutes of Health (NIH), Bethesda, MD, USA|https://prevention.nih.gov/tobacco-regulatory-research|Funds
		Added:
			Office of Behavioral and Social Sciences Research, NIH, USA|https://obssr.od.nih.gov|Funds
			National Institute of Mental Health (NIMH), Bethesda, MD, USA|https://www.nimh.nih.gov|Funds
			National Heart, Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, MD, USA|http://www.nhlbi.nih.gov/|Funds
			National Institute on Minority Health and Health Disparities (NIMHD), National Institutes of Health (NIH), Bethesda, MD, USA|https://www.nimhd.nih.gov/|Funds
			Tobacco Regulatory Science Program, National Institutes of Health (NIH), Bethesda, MD, USA|https://prevention.nih.gov/tobacco-regulatory-research|Funds
		Removed:

	'contactORCID' has been modified:
		Before: 
		After: 0000-0002-6099-2190

	'onto_domains' has been modified:
		Before:
			disease
			phenotype
		After:
			disease
			exposure
			phenotype
		Added:
			exposure
		Removed:

	'contact' has been modified:
		Before: PhenX Admin
		After: Ying Qin

	'grants' has been modified:
		Before:
		After:
			U41HG007050
		Added:
			U41HG007050
		Removed:

	'miriam_id' has been modified:
		Before: None
		After: 

	'homepage' has been modified:
		Before: http://bioportal.bioontology.org/ontologies/PHENX
		After: https://www.phenx.org/

Edits to 'https://fairsharing.org/FAIRsharing.y5jcwa' by 'The FAIRsharing Team' at 14:29, 20 Jun 2017 (approved):

	'homepage' has been modified:
		Before: https://www.phenx.org/
		After: http://bioportal.bioontology.org/ontologies/PHENX Organisations have changed:  Previous values: National Human Genome Research Institute (NHGRI)|US National Institutes of Health (NIH) | Undefined | Funds RTI International | Undefined | Maintains US National Institute on Drug Abuse (NIDA) | Government body | Funds New values:  National Human Genome Research Institute (NHGRI)|US National Institutes of Health (NIH) | Undefined | Funds US National Institute on Drug Abuse (NIDA) | Government body | Funds RTI International | Undefined | Maintains

Edits to 'https://fairsharing.org/FAIRsharing.y5jcwa' by 'The FAIRsharing Team' at 14:02, 01 Dec 2016 (approved):

	'homepage' has been modified:
		Before: http://bioportal.bioontology.org/ontologies/3078
		After: https://www.phenx.org/

Support

General

contact form

contact

Additional Information

Contact

Carol M. Hamilton

External Links

Bioportal

http://bioportal.bioontology.org/ontologies/PHENX

Tools

No tools defined

Schemas

No XSD schemas defined

Access / Retrieve Data

Conditions of Use

Data Release

release

https://www.phenxtoolkit.org/about/releases

Data Access

dbGaP Variable Search	https://www.phenxtoolkit.org/vsearch
download	https://www.phenxtoolkit.org/resources/download
browse	https://www.phenxtoolkit.org/protocols
advanced search	https://www.phenxtoolkit.org/search

Publications

PhenX: a toolkit for interdisciplinary genetics research.

Stover PJ,Harlan WR,Hammond JA,Hendershot T,Hamilton CM
Curr Opin Lipidol 2010

View Paper (PubMed) View Publication

The PhenX Toolkit: get the most from your measures.

Hamilton CM,Strader LC,Pratt JG,Maiese D,Hendershot T,Kwok RK,Hammond JA,Huggins W,Jackman D,Pan H,Nettles DS,Beaty TH,Farrer LA,Kraft P,Marazita ML,Ordovas JM,Pato CN,Spitz MR,Wagener D,Williams M,Junkins HA,Harlan WR,Ramos EM,Haines J
Am J Epidemiol 2011

View Paper (PubMed) View Publication

PhenX measures for phenotyping rare genetic conditions.

Phillips M,Grant T,Giampietro P,Bodurtha J,Valdez R,Maiese DR,Hendershot T,Terry SF,Hamilton CM
Genet Med 2017

View Paper (PubMed) View Publication

PHENX Ontology Display

View in BioPortal.

Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Sickle Cell Disease Ontology

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Implementing Databases (1)

PhenX Toolkit
The PhenX (consensus measures for Phenotypes and eXposures) Toolkit is a web-based catalog of recommended, standard measures of phenotypes and environmental exposures for use in biomedical research. The PhenX Toolkit offers well-established, broadly validated measures of phenotypes and exposures relevant to investigators in human genomics, epidemiology, and biomedical research. The measures in the Toolkit are selected by Working Groups of domain experts using a consensus process. The Toolkit provides detailed protocols, information about the measures, and tools to help investigators incorporate PhenX measures into their studies.

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by patwest

Funds

National Institute on Drug Abuse (NIDA), Bethesda, MD, USA (Government body)
National Human Genome Research Institute (NHGRI), Bethesda, MD, USA (Government body)
Office of Behavioral and Social Sciences Research, NIH, USA (Government body)
National Institute of Mental Health (NIMH), Bethesda, MD, USA (Government body)
National Heart, Lung and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, MD, USA (Government body)
National Institute on Minority Health and Health Disparities (NIMHD), National Institutes of Health (NIH), Bethesda, MD, USA (Government body)
Tobacco Regulatory Science Program, National Institutes of Health (NIH), Bethesda, MD, USA (Government body)

Maintains

RTI International (Company) Lead

Grant Number(s)

U41HG007050 (National Human Genome Research Institute (NHGRI), Bethesda, MD, USA)

PhenX Phenotypic Terms

We need your help!

Developed by

Contact Us

About FAIRsharing