databases > DOI:10.25504/FAIRsharing.ym3jjm
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ready GWIPS-viz

General Information
GWIPS-viz is a freely available on-line genome browser which provides pre-populated ribosome profiling (Ribo-seq) and mRNA-seq tracks from published studies.

Homepage http://gwips.ucc.ie/

Countries that developed this resource Republic of Ireland

Created in 2012





How to cite this record FAIRsharing.org: GWIPS-viz; GWIPS-viz; DOI: https://doi.org/10.25504/FAIRsharing.ym3jjm; Last edited: Jan. 8, 2020, 2:09 p.m.; Last accessed: Sep 20 2020 11:40 p.m.


This record is maintained by audrey  ORCID

Record added: Aug. 2, 2017, 12:07 p.m.
Record updated: Jan. 8, 2020, 9:25 a.m. by The FAIRsharing Team.

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In Collections
RDA Covid-19 WG Resources

Support

General

forum GWIPS-viz forum
help https://gwips.ucc.ie/goldenPath/help/hgT ...

Additional Information

Contact Audrey Michel   ORCID

Tools
RiboGalaxy https://ribogalaxy.ucc.ie/

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Access

Genome browser https://gwips.ucc.ie/cgi-bin/hgGateway
Transcriptome browser http://trips.ucc.ie/
Download https://gwips.ucc.ie/downloads/index.html



Publications

GWIPS-viz: development of a ribo-seq genome browser.

Michel AM, Fox G, M Kiran A, De Bo C, O'Connor PB, Heaphy SM, Mullan JP, Donohue CA, Higgins DG, Baranov PV.
Nucleic Acids Res. 2014 Jan;42(Database issue):D859-64 2014

View Paper (PubMed) View Publication

GWIPS-viz: 2018 update.

Michel AM,Kiniry SJ,O'Connor PBF,Mullan JP,Baranov PV
Nucleic Acids Res 2017

View Paper (PubMed) View Publication

The GWIPS-viz Browser.

Kiniry SJ,Michel AM,Baranov PV
Curr Protoc Bioinformatics 2018

View Paper (PubMed) View Publication

GWIPS-viz as a tool for exploring ribosome profiling evidence supporting the synthesis of alternative proteoforms.

Michel AM,Ahern AM,Donohue CA,Baranov PV
Proteomics 2015

View Paper (PubMed) View Publication

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Credit

Record Maintainer

Funds

Grant Number(s)

  • 094423 (The Wellcome Trust, UK)

  • 12/IA/1335 (Science Foundation Ireland)