GWIPS-viz

General Information

GWIPS-viz is a freely available on-line genome browser which provides pre-populated ribosome profiling (Ribo-seq) and mRNA-seq tracks from published studies.

Homepage http://gwips.ucc.ie/

Countries that developed this resource Republic of Ireland

Created in 2012

Taxonomic range

Arabidopsis thaliana

Bacillus subtilis

Bacteriophage lambda

Caenorhabditis elegans

Caulobacter crescentus

Danio rerio

Drosophila melanogaster

Escherichia coli

Homo sapiens

Human herpesvirus 5 strain Merlin

Mus musculus

Neurospora crassa

Plasmodium falciparum

Rattus norvegicus

Saccharomyces cerevisiae

Schizosaccharomyces pombe

Staphylococcus aureus

Streptomyces coelicolor

Trypanosoma brucei

Xenopus laevis

Zea mays

Knowledge Domains

Subjects

User-defined Tags

Data sharing

Translatomics

How to cite this record FAIRsharing.org: GWIPS-viz; GWIPS-viz; DOI: https://doi.org/10.25504/FAIRsharing.ym3jjm; Last edited: Jan. 8, 2020, 2:09 p.m.; Last accessed: Feb 27 2021 11:50 p.m.

This record is maintained by audrey ORCID

Record added: Aug. 2, 2017, 12:07 p.m.
Record updated: Jan. 8, 2020, 9:25 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.ym3jjm' by 'The FAIRsharing Team' at 09:25, 08 Jan 2020 (approved):

	'organizations' has been modified:
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		After:
			Science Foundation Ireland|https://www.sfi.ie/|Funds
			Wellcome Trust, UK|http://www.wellcome.ac.uk|Funds
		Added:
			Science Foundation Ireland|https://www.sfi.ie/|Funds
			Wellcome Trust, UK|http://www.wellcome.ac.uk|Funds
		Removed:

	'supportLinks' has been modified:
		Before:
			forum|http://gwips.ucc.ie/Forum/
		After:
			forum|http://gwips.ucc.ie/Forum/
			help|https://gwips.ucc.ie/goldenPath/help/hgTracksHelp_GWIPS.html
		Added:
			help|https://gwips.ucc.ie/goldenPath/help/hgTracksHelp_GWIPS.html
		Removed:

	'licences' has been modified:
		Before:
		After:
			GWIPS-viz  Conditions of Use|https://gwips.ucc.ie/index.html|Data
		Added:
			GWIPS-viz  Conditions of Use|https://gwips.ucc.ie/index.html|Data
		Removed:

	'dataProcesses' has been modified:
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		After:
			Genome browser
			Transcriptome browser
			Download
		Added:
			Genome browser
			Transcriptome browser
			Download
		Removed:

	'grants' has been modified:
		Before:
		After:
			094423
			12/IA/1335
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			094423
			12/IA/1335
		Removed:

	'miriam_id' has been modified:
		Before: None
		After: 

	'publications' has been modified:
		Before:
			GWIPS-viz: development of a ribo-seq genome browser.|Michel AM, Fox G, M Kiran A, De Bo C, O'Connor PB, Heaphy SM, Mullan JP, Donohue CA, Higgins DG, Baranov PV.|Nucleic Acids Res. 2014 Jan;42(Database issue):D859-64|2014
		After:
			GWIPS-viz: development of a ribo-seq genome browser.|Michel AM, Fox G, M Kiran A, De Bo C, O'Connor PB, Heaphy SM, Mullan JP, Donohue CA, Higgins DG, Baranov PV.|Nucleic Acids Res. 2014 Jan;42(Database issue):D859-64|2014
			GWIPS-viz: 2018 update.|Michel AM,Kiniry SJ,O'Connor PBF,Mullan JP,Baranov PV|Nucleic Acids Res|2017
			The GWIPS-viz Browser.|Kiniry SJ,Michel AM,Baranov PV|Curr Protoc Bioinformatics|2018
			GWIPS-viz as a tool for exploring ribosome profiling evidence supporting the synthesis of alternative proteoforms.|Michel AM,Ahern AM,Donohue CA,Baranov PV|Proteomics|2015
		Added:
			GWIPS-viz: 2018 update.|Michel AM,Kiniry SJ,O'Connor PBF,Mullan JP,Baranov PV|Nucleic Acids Res|2017
			The GWIPS-viz Browser.|Kiniry SJ,Michel AM,Baranov PV|Curr Protoc Bioinformatics|2018
			GWIPS-viz as a tool for exploring ribosome profiling evidence supporting the synthesis of alternative proteoforms.|Michel AM,Ahern AM,Donohue CA,Baranov PV|Proteomics|2015
		Removed:

	'tools' has been modified:
		Before:
		After:
			RiboGalaxy||https://ribogalaxy.ucc.ie/
		Added:
			RiboGalaxy||https://ribogalaxy.ucc.ie/
		Removed:

In Collections

RDA Covid-19 WG Resources

Support

General

forum	GWIPS-viz forum
help	https://gwips.ucc.ie/goldenPath/help/hgT ...

Additional Information

Contact

Audrey Michel ORCID

Tools

RiboGalaxy

https://ribogalaxy.ucc.ie/

Access / Retrieve Data

Conditions of Use

Applies to: Data use

GWIPS-viz Conditions of Use

Data Access

Genome browser	https://gwips.ucc.ie/cgi-bin/hgGateway
Transcriptome browser	http://trips.ucc.ie/
Download	https://gwips.ucc.ie/downloads/index.html

Publications

GWIPS-viz: development of a ribo-seq genome browser.

Michel AM, Fox G, M Kiran A, De Bo C, O'Connor PB, Heaphy SM, Mullan JP, Donohue CA, Higgins DG, Baranov PV.
Nucleic Acids Res. 2014 Jan;42(Database issue):D859-64 2014

View Paper (PubMed) View Publication

GWIPS-viz: 2018 update.

Michel AM,Kiniry SJ,O'Connor PBF,Mullan JP,Baranov PV
Nucleic Acids Res 2017

View Paper (PubMed) View Publication

The GWIPS-viz Browser.

Kiniry SJ,Michel AM,Baranov PV
Curr Protoc Bioinformatics 2018

View Paper (PubMed) View Publication

GWIPS-viz as a tool for exploring ribosome profiling evidence supporting the synthesis of alternative proteoforms.

Michel AM,Ahern AM,Donohue CA,Baranov PV
Proteomics 2015

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

UCSC Genome Browser database

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by audrey ORCID

Funds

The Wellcome Trust, UK (Charitable foundation)
Science Foundation Ireland (Government body)

Grant Number(s)

094423 (The Wellcome Trust, UK)
12/IA/1335 (Science Foundation Ireland)

GWIPS-viz

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