AgroPortal

General Information

The AgroPortal project reuses the biomedical domain’s semantic tools and insights to serve agronomy, but also food, plant, agriculture and biodiversity sciences. We offer a portal that features ontology hosting, search, versioning, visualization, comment, and recommendation; enables semantic annotation; stores and exploits ontology alignments; and enables interoperation with the semantic web. The AgroPortal specifically satisfies requirements of the agronomy community in terms of ontology formats (e.g., SKOS vocabularies and trait dictionaries) and supported features (offering detailed metadata and advanced annotation capabilities). The AgroPortal content is automatically retrieved by FAIRsharing.org (https://fairsharing.org/) and the Agrisemantics Map of Data Standards (http://vest.agrisemantics.org/).

Homepage http://agroportal.lirmm.fr

Countries that developed this resource France

Created in 2015

Taxonomic range

Not applicable

Knowledge Domains

Subjects

User-defined Tags

Natural Resources, Earth and Environment

Plant Phenotypes and Traits

How to cite this record FAIRsharing.org: AgroPortal; AgroPortal; DOI: https://doi.org/10.25504/FAIRsharing.z4xpxx; Last edited: July 8, 2019, 5:28 p.m.; Last accessed: Sep 16 2019 1:10 p.m.

This record is maintained by antool ORCID and Clement Jonquet (jonquet)

Record added: Nov. 21, 2017, 11:14 a.m.
Record updated: July 8, 2019, 5:28 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.z4xpxx' by 'The FAIRsharing Team' at 17:28, 08 Jul 2019 (approved):

	'onto_disciplines' has been modified:
		Before:
			Agricultural Law
			Agricultural and Food Process Engineering
			Agriculture
			Animal Husbandry, Breeding and Hygiene
			Aquaculture
			Basic Forest Research
			Biodiversity
			Botany
			Ecology
			Entomology
			Farms and Farming Systems
			Fisheries Science
			Food Security
			Health Sciences
			Nutritional Science
			Pathology
			Physics
			Plant Anatomy
			Plant Cell and Developmental Biology
			Rural and Agricultural Sociology
		After:
			Agricultural Law
			Agricultural and Food Process Engineering
			Agriculture
			Animal Husbandry, Breeding and Hygiene
			Aquaculture
			Basic Forest Research
			Biodiversity
			Botany
			Ecology
			Entomology
			Farms and Farming Systems
			Fisheries Science
			Food Security
			Health Sciences
			Nutritional Science
			Pathology
			Physics
			Plant Anatomy
			Plant Breeding
			Plant Cell and Developmental Biology
			Rural and Agricultural Sociology
		Added:
			Plant Breeding
		Removed:

	'miriam_id' has been modified:
		Before: None
		After: 

	'onto_domains' has been modified:
		Before:
			Breeding
			Geographic location
			Taxonomic classification
			food
			phenotype
		After:
			Geographic location
			Taxonomic classification
			food
			phenotype
		Added:
		Removed:
			Breeding

Edits to 'https://fairsharing.org/FAIRsharing.z4xpxx' by 'The FAIRsharing Team' at 14:37, 18 Sep 2018 (approved):

	'domains' has been modified:
		Before:
			Agricultural Law
			Agricultural and Food Process Engineering
			Animal Husbandry, Breeding and Hygiene
			Aquaculture
			Basic Forest Research
			Biodiversity
			Breeding
			Ecology
			Entomology
			Farms and Farming Systems
			Fisheries Science
			Food
			Food Security
			Geographical location
			Health sciences
			Natural Resources, Earth and Environment
			Nutritional science
			Pathology and Forensic Medicine
			Phenotype
			Physics
			Plant Cell and Developmental Biology
			Plant Phenotypes and Traits
			Plant Science and Plant Products
			Plant anatomy
			Rural and Agricultural Sociology
			Taxonomic classification
		After:
			Agricultural Law
			Agricultural and Food Process Engineering
			Agriculture
			Animal Husbandry, Breeding and Hygiene
			Aquaculture
			Basic Forest Research
			Biodiversity
			Botany
			Breeding
			Ecology
			Entomology
			Farms and Farming Systems
			Fisheries Science
			Food
			Food Security
			Geographical location
			Health sciences
			Natural Resources, Earth and Environment
			Nutritional science
			Pathology and Forensic Medicine
			Phenotype
			Physics
			Plant Cell and Developmental Biology
			Plant Phenotypes and Traits
			Plant Science and Plant Products
			Plant anatomy
			Rural and Agricultural Sociology
			Taxonomic classification
		Added:
			Agriculture
			Botany
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.z4xpxx' by 'The FAIRsharing Team' at 14:32, 18 Sep 2018 (approved):

	'domains' has been modified:
		Before:
			Agricultural Law
			Agricultural and Food Process Engineering
			Animal Husbandry, Breeding and Hygiene
			Aquaculture
			Basic Forest Research
			Biodiversity
			Breeding
			Ecology
			Entomology
			Farms and Farming Systems
			Fisheries Science
			Food
			Food Security
			Geographical location
			Health sciences
			Natural Resources, Earth and Environment
			Nutritional science
			Pathology and Forensic Medicine
			Physics
			Plant Cell and Developmental Biology
			Plant Phenotypes and Traits
			Plant Science and Plant Products
			Plant anatomy
			Rural and Agricultural Sociology
			Taxonomic classification
		After:
			Agricultural Law
			Agricultural and Food Process Engineering
			Animal Husbandry, Breeding and Hygiene
			Aquaculture
			Basic Forest Research
			Biodiversity
			Breeding
			Ecology
			Entomology
			Farms and Farming Systems
			Fisheries Science
			Food
			Food Security
			Geographical location
			Health sciences
			Natural Resources, Earth and Environment
			Nutritional science
			Pathology and Forensic Medicine
			Phenotype
			Physics
			Plant Cell and Developmental Biology
			Plant Phenotypes and Traits
			Plant Science and Plant Products
			Plant anatomy
			Rural and Agricultural Sociology
			Taxonomic classification
		Added:
			Phenotype
		Removed:

	'miriam_id' has been modified:
		Before: 
		After: None

Edits to 'https://fairsharing.org/FAIRsharing.z4xpxx' by 'The FAIRsharing Team' at 14:07, 18 Sep 2018 (approved):

	'domains' has been modified:
		Before:
			Agricultural Law
			Agricultural and Food Process Engineering
			Animal Husbandry, Breeding and Hygiene
			Aquaculture
			Basic Forest Research
			Biodiversity
			Breeding
			Ecology
			Entomology
			Farms and Farming Systems
			Fisheries Science
			Food
			Food Security
			Geographical location
			Health sciences
			Natural Resources, Earth and Environment
			Nutritional science
			Pathology and Forensic Medicine
			Physics
			Plant Anatomy and Development
			Plant Phenotypes and Traits
			Plant Science and Plant Products
			Rural and Agricultural Sociology
			Taxonomic classification
		After:
			Agricultural Law
			Agricultural and Food Process Engineering
			Animal Husbandry, Breeding and Hygiene
			Aquaculture
			Basic Forest Research
			Biodiversity
			Breeding
			Ecology
			Entomology
			Farms and Farming Systems
			Fisheries Science
			Food
			Food Security
			Geographical location
			Health sciences
			Natural Resources, Earth and Environment
			Nutritional science
			Pathology and Forensic Medicine
			Physics
			Plant Cell and Developmental Biology
			Plant Phenotypes and Traits
			Plant Science and Plant Products
			Plant anatomy
			Rural and Agricultural Sociology
			Taxonomic classification
		Added:
			Plant Cell and Developmental Biology
			Plant anatomy
		Removed:
			Plant Anatomy and Development

	'miriam_id' has been modified:
		Before: None
		After:

Edits to 'https://fairsharing.org/FAIRsharing.z4xpxx' by 'The FAIRsharing Team' at 12:01, 18 Sep 2018 (approved):

	'domains' has been modified:
		Before:
			Agricultural Law
			Agricultural and Food Process Engineering
			Animal Husbandry, Breeding and Hygiene
			Aquaculture
			Basic Forest Research
			Biodiversity
			Breeding
			Ecology
			Entomology
			Farms and Farming Systems
			Fisheries Science
			Food Security
			Food and Human Nutrition
			Geographical location
			Health sciences
			Natural Resources, Earth and Environment
			Pathology and Forensic Medicine
			Physics
			Plant Anatomy and Development
			Plant Phenotypes and Traits
			Plant Science and Plant Products
			Rural and Agricultural Sociology
			Taxonomic classification
		After:
			Agricultural Law
			Agricultural and Food Process Engineering
			Animal Husbandry, Breeding and Hygiene
			Aquaculture
			Basic Forest Research
			Biodiversity
			Breeding
			Ecology
			Entomology
			Farms and Farming Systems
			Fisheries Science
			Food
			Food Security
			Geographical location
			Health sciences
			Natural Resources, Earth and Environment
			Nutritional science
			Pathology and Forensic Medicine
			Physics
			Plant Anatomy and Development
			Plant Phenotypes and Traits
			Plant Science and Plant Products
			Rural and Agricultural Sociology
			Taxonomic classification
		Added:
			Food
			Nutritional science
		Removed:
			Food and Human Nutrition

Edits to 'https://fairsharing.org/FAIRsharing.z4xpxx' by 'The FAIRsharing Team' at 10:33, 18 Sep 2018 (approved):

	'domains' has been modified:
		Before:
			Agricultural Law
			Agricultural and Food Process Engineering
			Animal Science and Animal Products
			Aquaculture
			Basic Forest Research
			Biodiversity
			Breeding
			Ecology
			Entomology
			Farms and Farming Systems
			Fisheries Science
			Food Security
			Food and Human Nutrition
			Geographical location
			Health sciences
			Natural Resources, Earth and Environment
			Pathology and Forensic Medicine
			Physics
			Plant Anatomy and Development
			Plant Phenotypes and Traits
			Plant Science and Plant Products
			Rural and Agricultural Sociology
			Taxonomic classification
		After:
			Agricultural Law
			Agricultural and Food Process Engineering
			Animal Husbandry, Breeding and Hygiene
			Animal Science and Animal Products
			Aquaculture
			Basic Forest Research
			Biodiversity
			Breeding
			Ecology
			Entomology
			Farms and Farming Systems
			Fisheries Science
			Food Security
			Food and Human Nutrition
			Geographical location
			Health sciences
			Natural Resources, Earth and Environment
			Pathology and Forensic Medicine
			Physics
			Plant Anatomy and Development
			Plant Phenotypes and Traits
			Plant Science and Plant Products
			Rural and Agricultural Sociology
			Taxonomic classification
		Added:
			Animal Husbandry, Breeding and Hygiene
		Removed:

	'miriam_id' has been modified:
		Before: 
		After: None

Edits to 'https://fairsharing.org/FAIRsharing.z4xpxx' by 'The FAIRsharing Team' at 20:00, 15 Jul 2018 (approved):

	'domains' has been modified:
		Before:
			Agricultural Law|None|http://aims.fao.org/aos/agrovoc/c_28633
			Agricultural and Food Process Engineering|None|http://aims.fao.org/aos/agrovoc/c_8673
			Animal Science and Animal Products|None|http://data.agroportal.lirmm.fr/categories/ANIMAL
			Aquaculture|None|http://aims.fao.org/aos/agrovoc/c_550
			Basic Forest Research|None|http://www.fairsharing.org/ontology/SRAO_0000157
			Biodiversity|information content entity|http://edamontology.org/topic_3050
			Breeding|None|http://purl.obolibrary.org/obo/OMIT_0003303
			Chemistry|process|http://edamontology.org/topic_3314
			Ecology||http://edamontology.org/topic_0610
			Entomology|None|http://purl.obolibrary.org/obo/NCIT_C16550
			Farms and Farming Systems|None|http://data.agroportal.lirmm.fr/categories/FARMING
			Fisheries Science|None|http://aims.fao.org/aos/agrovoc/c_2934
			Food Security|None|http://aims.fao.org/aos/agrovoc/c_10967
			Food and Human Nutrition|None|http://data.agroportal.lirmm.fr/categories/NUTRITION
			Geographical location|information content entity|http://edamontology.org/data_3720
			Health sciences|None|http://purl.obolibrary.org/obo/NCIT_C19199
			Natural Resources|Earth and Environment|None|http://data.agroportal.lirmm.fr/categories/NATRES
			Pathology and Forensic Medicine|None|http://edamontology.org/topic_0634
			Physics|| http://edamontology.org/topic_3318
			Plant Anatomy and Development|None|http://data.agroportal.lirmm.fr/categories/PLANTDEV
			Plant Phenotypes and Traits|None|http://data.agroportal.lirmm.fr/categories/TRAITS
			Plant Science and Plant Products|None|http://data.agroportal.lirmm.fr/categories/PLANT
			Rural and Agricultural Sociology|None|http://www.fairsharing.org/ontology/SRAO_0000280
			Taxonomic classification|process|http://edamontology.org/data_1872
		After:
			Agricultural Law|None|http://aims.fao.org/aos/agrovoc/c_28633
			Agricultural and Food Process Engineering|None|http://aims.fao.org/aos/agrovoc/c_8673
			Animal Science and Animal Products|None|http://data.agroportal.lirmm.fr/categories/ANIMAL
			Aquaculture|None|http://aims.fao.org/aos/agrovoc/c_550
			Basic Forest Research|None|http://www.fairsharing.org/ontology/SRAO_0000157
			Biodiversity|information content entity|http://edamontology.org/topic_3050
			Breeding|None|http://purl.obolibrary.org/obo/OMIT_0003303
			Ecology||http://edamontology.org/topic_0610
			Entomology|None|http://purl.obolibrary.org/obo/NCIT_C16550
			Farms and Farming Systems|None|http://data.agroportal.lirmm.fr/categories/FARMING
			Fisheries Science|None|http://aims.fao.org/aos/agrovoc/c_2934
			Food Security|None|http://aims.fao.org/aos/agrovoc/c_10967
			Food and Human Nutrition|None|http://data.agroportal.lirmm.fr/categories/NUTRITION
			Geographical location|information content entity|http://edamontology.org/data_3720
			Health sciences|None|http://purl.obolibrary.org/obo/NCIT_C19199
			Natural Resources|Earth and Environment|None|http://data.agroportal.lirmm.fr/categories/NATRES
			Pathology and Forensic Medicine|None|http://edamontology.org/topic_0634
			Physics|| http://edamontology.org/topic_3318
			Plant Anatomy and Development|None|http://data.agroportal.lirmm.fr/categories/PLANTDEV
			Plant Phenotypes and Traits|None|http://data.agroportal.lirmm.fr/categories/TRAITS
			Plant Science and Plant Products|None|http://data.agroportal.lirmm.fr/categories/PLANT
			Rural and Agricultural Sociology|None|http://www.fairsharing.org/ontology/SRAO_0000280
			Taxonomic classification|process|http://edamontology.org/data_1872
		Added:
		Removed:
			Chemistry|process|http://edamontology.org/topic_3314

Edits to 'https://fairsharing.org/FAIRsharing.z4xpxx' by 'The FAIRsharing Team' at 10:55, 24 May 2018 (approved):

	'miriam_url' has been modified:
		Before: None
		After:

Edits to 'https://fairsharing.org/FAIRsharing.z4xpxx' by 'The FAIRsharing Team' at 10:19, 16 May 2018 (approved):

	'in_curation' has been modified:
		Before: True
		After: False

Edits to 'https://fairsharing.org/FAIRsharing.z4xpxx' by 'antool' at 17:06, 30 Apr 2018 (approved):

	'related_databases' has been modified:
		Before:
			biodbcore-000764|BioPortal
		After:
			biodbcore-000764|BioPortal
			biodbcore-001083|OBO Foundry
		Added:
			biodbcore-001083|OBO Foundry
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.z4xpxx' by 'antool' at 17:00, 30 Apr 2018 (approved):

	'accessPoints' has been modified:
		Before:
			Other|http://sparql.agroportal.lirmm.fr/test/|SPARQL endpoint
			REST|http://data.agroportal.lirmm.fr/documentationw|REST API
		After:
			Other|http://sparql.agroportal.lirmm.fr/test/|SPARQL endpoint
			REST|http://data.agroportal.lirmm.fr/documentation|REST API
		Added:
			REST|http://data.agroportal.lirmm.fr/documentation|REST API
		Removed:
			REST|http://data.agroportal.lirmm.fr/documentationw|REST API

Edits to 'https://fairsharing.org/FAIRsharing.z4xpxx' by 'antool' at 16:12, 26 Apr 2018 (approved):

	'related_standards' has been modified:
		Before:
			bsg-s000729|Ontology Metadata Vocabulary
			bsg-s000559|Resource Description Framework
			bsg-s000283|Resource Description Framework Schema
			bsg-s000560|Web Ontology Language
		After:
			bsg-s000729|Ontology Metadata Vocabulary
			bsg-s000559|Resource Description Framework
			bsg-s000283|Resource Description Framework Schema
			bsg-s000560|Web Ontology Language
			bsg-s000534|OBO Format Syntax and Semantics
		Added:
			bsg-s000534|OBO Format Syntax and Semantics
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.z4xpxx' by 'antool' at 16:01, 26 Apr 2018 (approved):

	'taxonomies' has been modified:
		Before:
			Plantae|
		After:
			Not applicable|
		Added:
			Not applicable|
		Removed:
			Plantae|

Edits to 'https://fairsharing.org/FAIRsharing.z4xpxx' by 'antool' at 15:29, 26 Apr 2018 (approved):

	'description' has been modified:
		Before: The AgroPortal project reuses the biomedical domains semantic tools and insights to serve agronomy, but also food, plant, agriculture and biodiversity sciences. We offer a portal that features ontology hosting, search, versioning, visualization, comment, and recommendation; enables semantic annotation; stores and exploits ontology alignments; and enables interoperation with the semantic web. The AgroPortal specifically satisfies requirements of the agronomy community in terms of ontology formats (e.g., SKOS vocabularies and trait dictionaries) and supported features (offering detailed metadata and advanced annotation capabilities).
		After: The AgroPortal project reuses the biomedical domains semantic tools and insights to serve agronomy, but also food, plant, agriculture and biodiversity sciences. We offer a portal that features ontology hosting, search, versioning, visualization, comment, and recommendation; enables semantic annotation; stores and exploits ontology alignments; and enables interoperation with the semantic web. The AgroPortal specifically satisfies requirements of the agronomy community in terms of ontology formats (e.g., SKOS vocabularies and trait dictionaries) and supported features (offering detailed metadata and advanced annotation capabilities). The AgroPortal content is automatically retrieved by FAIRsharing.org (https://fairsharing.org/) and the Agrisemantics Map of Data Standards (http://vest.agrisemantics.org/).

Edits to 'https://fairsharing.org/FAIRsharing.z4xpxx' by 'antool' at 15:00, 26 Apr 2018 (approved):

	'description' has been modified:
		Before: The AgroPortal project reuses the biomedical domains semantic tools and insights to serve agronomy, but also food, plant, and biodiversity sciences. We offer a portal that features ontology hosting, search, versioning, visualization, comment, and recommendation; enables semantic annotation; stores and exploits ontology alignments; and enables interoperation with the semantic web. The AgroPortal specifically satisfies requirements of the agronomy community in terms of ontology formats (e.g., SKOS vocabularies and trait dictionaries) and supported features (offering detailed metadata and advanced annotation capabilities).
		After: The AgroPortal project reuses the biomedical domains semantic tools and insights to serve agronomy, but also food, plant, agriculture and biodiversity sciences. We offer a portal that features ontology hosting, search, versioning, visualization, comment, and recommendation; enables semantic annotation; stores and exploits ontology alignments; and enables interoperation with the semantic web. The AgroPortal specifically satisfies requirements of the agronomy community in terms of ontology formats (e.g., SKOS vocabularies and trait dictionaries) and supported features (offering detailed metadata and advanced annotation capabilities).

Edits to 'https://fairsharing.org/FAIRsharing.z4xpxx' by 'The FAIRsharing Team' at 11:11, 26 Apr 2018 (approved):

	'in_curation' has been modified:
		Before: False
		After: True

Edits to 'https://fairsharing.org/FAIRsharing.z4xpxx' by 'The FAIRsharing Team' at 19:43, 25 Apr 2018 (approved):

	'deprecation_reason' has been modified:
		Before: None
		After: None

Edits to 'https://fairsharing.org/FAIRsharing.z4xpxx' by 'antool' at 16:25, 25 Apr 2018 (approved):

	'related_standards' has been modified:
		Before:
			bsg-s000729|Ontology Metadata Vocabulary
		After:
			bsg-s000729|Ontology Metadata Vocabulary
			bsg-s000559|Resource Description Framework
			bsg-s000283|Resource Description Framework Schema
			bsg-s000560|Web Ontology Language
		Added:
			bsg-s000559|Resource Description Framework
			bsg-s000283|Resource Description Framework Schema
			bsg-s000560|Web Ontology Language
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.z4xpxx' by 'antool' at 15:44, 25 Apr 2018 (approved):

	'supportLinks' has been modified:
		Before:
			http://agroportal.lirmm.fr/help
			https://github.com/agroportal/documentation/wiki
			https://docs.google.com/document/d/1Qdo0cWv5xW_NLFdVLnqDGZiNz7p7yQ1rdpzO8axpxrY/pub
		After:
			http://agroportal.lirmm.fr/help
			https://github.com/agroportal/documentation/wiki
			http://agroportal.lirmm.fr/feedback/
		Added:
			http://agroportal.lirmm.fr/feedback/
		Removed:
			https://docs.google.com/document/d/1Qdo0cWv5xW_NLFdVLnqDGZiNz7p7yQ1rdpzO8axpxrY/pub

Edits to 'https://fairsharing.org/FAIRsharing.z4xpxx' by 'antool' at 15:24, 25 Apr 2018 (approved):

	'domains' has been modified:
		Before:
			Agricultural and Food Process Engineering|None|http://aims.fao.org/aos/agrovoc/c_8673
			Agriculture|process|http://aims.fao.org/aos/agrovoc/c_203
			Agroecology|None|http://aims.fao.org/aos/agrovoc/c_92381
			Agronomy|None|http://aims.fao.org/aos/agrovoc/c_211
			Animal Science and Animal Products|None|http://data.agroportal.lirmm.fr/categories/ANIMAL
			Biodiversity|information content entity|http://edamontology.org/topic_3050
			Breeding|None|http://purl.obolibrary.org/obo/OMIT_0003303
			Ecology||http://edamontology.org/topic_0610
			Entomology|None|http://purl.obolibrary.org/obo/NCIT_C16550
			Farms and Farming Systems|None|http://data.agroportal.lirmm.fr/categories/FARMING
			Food and Human Nutrition|None|http://data.agroportal.lirmm.fr/categories/NUTRITION
			Geographical location|information content entity|http://edamontology.org/data_3720
			Health sciences|None|http://purl.obolibrary.org/obo/NCIT_C19199
			Natural Resources|Earth and Environment|None|http://data.agroportal.lirmm.fr/categories/NATRES
			Plant Anatomy and Development|None|http://data.agroportal.lirmm.fr/categories/PLANTDEV
			Plant Genetic Resources|None|http://data.agroportal.lirmm.fr/categories/GENPLANT
			Plant Phenotypes and Traits|None|http://data.agroportal.lirmm.fr/categories/TRAITS
			Plant Science and Plant Products|None|http://data.agroportal.lirmm.fr/categories/PLANT
			Rural and Agricultural Sociology|None|http://www.fairsharing.org/ontology/SRAO_0000280
			Taxonomic classification|process|http://edamontology.org/data_1872
			fore|None|
		After:
			Physical and Chemical Sciences|None|
			Farms and Farming Systems|None|http://data.agroportal.lirmm.fr/categories/FARMING
			Geographical Locations|None|
			Plant Phenotypes and Traits|None|http://data.agroportal.lirmm.fr/categories/TRAITS
			Breeding and Genetic Improvement|None|
			Plant Anatomy and Development|None|http://data.agroportal.lirmm.fr/categories/PLANTDEV
			Natural Resources|Earth and Environment|None|http://data.agroportal.lirmm.fr/categories/NATRES
			Food Security|None|
			Animal Science and Animal Products|None|http://data.agroportal.lirmm.fr/categories/ANIMAL
			Agricultural Research|Technology and Engineering|None|
			Health and Pathology|None|
			Insects and Entomology|None|
			Fisheries and Aquaculture|None|
			Biodiversity and Ecology|None|
			Plant Science and Plant Products|None|http://data.agroportal.lirmm.fr/categories/PLANT
			Plant Genetic Resources|None|http://data.agroportal.lirmm.fr/categories/GENPLANT
			Government|Agricultural Law and Regulations|None|
			Forest Science and Forest Products|None|
			Food and Human Nutrition|None|http://data.agroportal.lirmm.fr/categories/NUTRITION
			Taxonomic Classifications of Organisms|None|
			Rural and Agricultural Sociology|None|http://www.fairsharing.org/ontology/SRAO_0000280
		Added:
			Physical and Chemical Sciences|None|
			Geographical Locations|None|
			Breeding and Genetic Improvement|None|
			Food Security|None|
			Agricultural Research|Technology and Engineering|None|
			Health and Pathology|None|
			Insects and Entomology|None|
			Fisheries and Aquaculture|None|
			Biodiversity and Ecology|None|
			Government|Agricultural Law and Regulations|None|
			Forest Science and Forest Products|None|
			Taxonomic Classifications of Organisms|None|
		Removed:
			Agricultural and Food Process Engineering|None|http://aims.fao.org/aos/agrovoc/c_8673
			Agriculture|process|http://aims.fao.org/aos/agrovoc/c_203
			Agroecology|None|http://aims.fao.org/aos/agrovoc/c_92381
			Agronomy|None|http://aims.fao.org/aos/agrovoc/c_211
			Biodiversity|information content entity|http://edamontology.org/topic_3050
			Breeding|None|http://purl.obolibrary.org/obo/OMIT_0003303
			Ecology||http://edamontology.org/topic_0610
			Entomology|None|http://purl.obolibrary.org/obo/NCIT_C16550
			Geographical location|information content entity|http://edamontology.org/data_3720
			Health sciences|None|http://purl.obolibrary.org/obo/NCIT_C19199
			Taxonomic classification|process|http://edamontology.org/data_1872
			fore|None|

Edits to 'https://fairsharing.org/FAIRsharing.z4xpxx' by 'antool' at 15:03, 25 Apr 2018 (approved):

	'domains' has been modified:
		Before:
			Agricultural and Food Process Engineering|None|http://aims.fao.org/aos/agrovoc/c_8673
			Agriculture|process|http://aims.fao.org/aos/agrovoc/c_203
			Agroecology|None|http://aims.fao.org/aos/agrovoc/c_92381
			Agronomy|None|http://aims.fao.org/aos/agrovoc/c_211
			Animal Science and Animal Products|None|http://data.agroportal.lirmm.fr/categories/ANIMAL
			Breeding|None|http://purl.obolibrary.org/obo/OMIT_0003303
			Farms and Farming Systems|None|http://data.agroportal.lirmm.fr/categories/FARMING
			Food and Human Nutrition|None|http://data.agroportal.lirmm.fr/categories/NUTRITION
			Natural Resources|Earth and Environment|None|http://data.agroportal.lirmm.fr/categories/NATRES
			Plant Anatomy and Development|None|http://data.agroportal.lirmm.fr/categories/PLANTDEV
			Plant Genetic Resources|None|http://data.agroportal.lirmm.fr/categories/GENPLANT
			Plant Phenotypes and Traits|None|http://data.agroportal.lirmm.fr/categories/TRAITS
			Plant Science and Plant Products|None|http://data.agroportal.lirmm.fr/categories/PLANT
			Taxonomic classification|process|http://edamontology.org/data_1872
		After:
			Agricultural and Food Process Engineering|None|http://aims.fao.org/aos/agrovoc/c_8673
			Agriculture|process|http://aims.fao.org/aos/agrovoc/c_203
			Agroecology|None|http://aims.fao.org/aos/agrovoc/c_92381
			Agronomy|None|http://aims.fao.org/aos/agrovoc/c_211
			Animal Science and Animal Products|None|http://data.agroportal.lirmm.fr/categories/ANIMAL
			Breeding|None|http://purl.obolibrary.org/obo/OMIT_0003303
			Farms and Farming Systems|None|http://data.agroportal.lirmm.fr/categories/FARMING
			Food and Human Nutrition|None|http://data.agroportal.lirmm.fr/categories/NUTRITION
			Natural Resources|Earth and Environment|None|http://data.agroportal.lirmm.fr/categories/NATRES
			Plant Anatomy and Development|None|http://data.agroportal.lirmm.fr/categories/PLANTDEV
			Plant Genetic Resources|None|http://data.agroportal.lirmm.fr/categories/GENPLANT
			Plant Phenotypes and Traits|None|http://data.agroportal.lirmm.fr/categories/TRAITS
			Plant Science and Plant Products|None|http://data.agroportal.lirmm.fr/categories/PLANT
			Taxonomic classification|process|http://edamontology.org/data_1872
			Biodiversity|information content entity|http://edamontology.org/topic_3050
			Ecology||http://edamontology.org/topic_0610
			fore|None|
			Geographical location|information content entity|http://edamontology.org/data_3720
			Health sciences|None|http://purl.obolibrary.org/obo/NCIT_C19199
			Entomology|None|http://purl.obolibrary.org/obo/NCIT_C16550
			Rural and Agricultural Sociology|None|http://www.fairsharing.org/ontology/SRAO_0000280
		Added:
			Biodiversity|information content entity|http://edamontology.org/topic_3050
			Ecology||http://edamontology.org/topic_0610
			fore|None|
			Geographical location|information content entity|http://edamontology.org/data_3720
			Health sciences|None|http://purl.obolibrary.org/obo/NCIT_C19199
			Entomology|None|http://purl.obolibrary.org/obo/NCIT_C16550
			Rural and Agricultural Sociology|None|http://www.fairsharing.org/ontology/SRAO_0000280
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.z4xpxx' by 'antool' at 14:40, 25 Apr 2018 (approved):

	'name' has been modified:
		Before: Agroportal
		After: AgroPortal

Edits to 'https://fairsharing.org/FAIRsharing.z4xpxx' by 'The FAIRsharing Team' at 11:15, 21 Nov 2017 (approved):

	'related_standards' has been modified:
		Before:
		After:
			bsg-s000729|Ontology Metadata Vocabulary
		Added:
			bsg-s000729|Ontology Metadata Vocabulary
		Removed:

In Collections

AgBioData

Support

General

contact form	Contact Form
help	AgroPortal Help
online documentation	AgroPortal Documentation

Additional Information

Contact

Clement Jonquet ORCID

Tools

AgroPortal Ontology Recommender	http://agroportal.lirmm.fr/recommender
AgroPortal Annotator	http://agroportal.lirmm.fr/annotator

Access / Retrieve Data

Conditions of Use

REST Web Services

REST API

http://data.agroportal.lirmm.fr/documentation

Other Web Services

SPARQL endpoint

http://sparql.agroportal.lirmm.fr/test/

Publications

10.1016/j.compag.2017.10.012

Clément Jonquet, Anne Toulet, Elizabeth Arnaud, Sophie Aubin, Esther Dzalé Yeumo, Vincent Emonet, John Graybeal, Marie-Angélique Laporte, Mark A. Musen, Valeria Pesce, Pierre Larmande.
Computers and Electronics in Agriculture 2018

View Publication

Reusing the NCBO BioPortal Technology for Agronomy to Build AgroPortal.

Clement Jonquet, Anne Toulet, Elizabeth Arnaud, Sophie Aubin, Esther Dzalé-Yeumo, Vincent Emonet, John Graybeal, Mark A Musen, Cyril Pommier, Pierre Larmande
Proceedings of the Joint International Conference on Biological Ontology and BioCreative, Corvallis, Oregon, United States, August 1-4, 2016. 2016

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

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Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by antool ORCID and Clement Jonquet (jonquet)

Funds

National Centre for Scientific Research (CNRS), Paris, France (Government body)
European Commission Horizon2020 Programme (Government body)
Marie Sklodowska-Curie
The French National Research Agency (ANR), France (Government body)

Maintains

University of Montpellier, France (University)

Grant Number(s)

701771 (Marie Sklodowska-Curie)
ANR-10-LABX-20 (The French National Research Agency (ANR), France)
ANR-11-BINF-0002 (The French National Research Agency (ANR), France)
ANR-12-JS02-01001 (The French National Research Agency (ANR), France)

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