Systems Biology Graphical Notation
Abbreviation: SBGN
Homepage http://sbgn.org
Countries that developed this resource Canada , European Union , Japan , United Kingdom , United States
Created in 2005
Taxonomic range
Knowledge Domains
Subjects
How to cite this record FAIRsharing.org: SBGN; Systems Biology Graphical Notation; DOI: https://doi.org/10.25504/FAIRsharing.z9kvry; Last edited: May 20, 2021, 1:59 p.m.; Last accessed: Jun 21 2021 10:56 p.m.
Record updated: May 11, 2021, 1:40 p.m. by The FAIRsharing Team.
| FAQ | http://www.sbgn.org/Documents/FAQs |
| help | http://www.sbgn.org/User_Page |
| help | http://www.sbgn.org/Developer_Page |
| Mailing List | None |
| online documentation | http://www.sbgn.org/Community |
Additional Information
| Contact | sbgn-discuss@googlegroups.com |
| LibSBGN | http://www.sbgn.org/LibSBGN |
| LibSBGN Render Comparison | http://libsbgn.sourceforge.net/render_comparison/ |
| Render Comparison | http://sysbioapps.dyndns.org/RenderComparison/ |
No XSD schemas defined
Conditions of Use
Data Release
| Download Specification | http://www.sbgn.org/Documents/All_specifications |
Systems Biology Graphical Notation: Entity Relationship language Level 1 Version 2.
Sorokin A,Le Novere N,Luna A,Czauderna T,Demir E,Haw R,Mi H,Moodie S,Schreiber F,Villeger A
J Integr Bioinform 2015
The Systems Biology Graphical Notation.
Le Novere N et al.
Nat Biotechnol 2009
Systems Biology Graphical Notation: Activity Flow language Level 1 Version 1.2.
Mi H,Schreiber F,Moodie S,Czauderna T,Demir E,Haw R,Luna A,Le Novere N,Sorokin A,Villeger A
J Integr Bioinform 2015
gammaCaMKII shuttles Ca(2)(+)/CaM to the nucleus to trigger CREB phosphorylation and gene expression.
Ma H,Groth RD,Cohen SM,Emery JF,Li B,Hoedt E,Zhang G,Neubert TA,Tsien RW
Cell 2014
Reporting Guidelines
No guidelines defined
Terminology Artifacts
Models and Formats
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
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Integrated Pathway Analysis and Visualization System
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SubtiWiki
Collaborative resource for the Bacillus community.
Termini-Oriented Protein Function INferred Database
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BioModels
BioModels is a repository of computational models of biological processes. It allows users to search and retrieve mathematical models published in the literature. Many models are manually curated (to ensure reproducibility) and extensively cross-linked to publicly available reference information.
Reactome - a curated knowledgebase of biological pathways
The cornerstone of Reactome is a freely available, open source relational database of signaling and metabolic molecules and their relations organized into biological pathways and processes. The core unit of the Reactome data model is the reaction. Entities (nucleic acids, proteins, complexes, vaccines, anti-cancer therapeutics and small molecules) participating in reactions form a network of biological interactions and are grouped into pathways. Examples of biological pathways in Reactome include classical intermediary metabolism, signaling, transcriptional regulation, apoptosis and disease. Inferred orthologous reactions are available for 15 non-human species including mouse, rat, chicken, zebrafish, worm, fly, and yeast.
PathBank
PathBank is an interactive, visual database containing more than 100 000 machine-readable pathways found in model organisms such as humans, mice, E. coli, yeast, and Arabidopsis thaliana. The majority of these pathways are not found in any other pathway database. PathBank is designed specifically to support pathway elucidation and pathway discovery in metabolomics, transcriptomics, proteomics, and systems biology. All PathBank pathways include information on the relevant organelles, subcellular compartments, protein complex cofactors, protein complex locations, metabolite locations, chemical structures, and protein complex quaternary structures. The database is easily browsed and supports full text, sequence, and chemical structure searching.
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Record Maintainer
Funds
Biotechnology and Biological Sciences Research Council (BBSRC), UK (Government body)
Biological Network Modelling Center (BNMC), Beckman Institute, California Institute of Technology (Caltech), Pasadena, CA, USA (Government body)
New Energy and Industrial Technology Development Organization (Company)
Okinawa Institute of Science and Technology Graduate University, OIST
National Science Foundation (NSF), USA (Government body)
Maintains
COmputational Modeling in BIology NEtwork (COMBINE) (Consortium)
