standards > model/format > DOI:10.25504/FAIRsharing.zb33h5
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ready TAIR annotation data Format


General Information
At TAIR, we display Gene Ontology and Plant Ontology annotations made by TAIR curators and those made by the community including individual researchers and contributors to the GO Consortium. The GO annotations in TAIR are made using a combination of manual and computational methods.



How to cite this record FAIRsharing.org: TAIR annotation data Format; TAIR annotation data Format; DOI: https://doi.org/10.25504/FAIRsharing.zb33h5; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Dec 07 2021 9:11 p.m.


This record is maintained by taircurator

Record updated: Jan. 30, 2018, 2:09 p.m. by The FAIRsharing Team.

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General

Additional Information


Tools

Schemas

No XSD schemas defined


Access / Retrieve Data

Conditions of Use

Applies to: Data use Applies to: Database software

Data Access




Publications

Functional annotation of the Arabidopsis genome using controlled vocabularies.

Berardini TZ,Mundodi S,Reiser L,Huala E,Garcia-Hernandez M,Zhang P,Mueller LA,Yoon J,Doyle A,Lander G,Moseyko N,Yoo D,Xu I,Zoeckler B,Montoya M,Miller N,Weems D,Rhee SY
Plant Physiol 2004

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The Arabidopsis information resource: Making and mining the "gold standard" annotated reference plant genome.

Berardini TZ,Reiser L,Li D,Mezheritsky Y,Muller R,Strait E,Huala E
Genesis 2015

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Using the Arabidopsis information resource (TAIR) to find information about Arabidopsis genes.

Lamesch P,Dreher K,Swarbreck D,Sasidharan R,Reiser L,Huala E
Curr Protoc Bioinformatics 2010

View Paper (PubMed) View Publication

Related Standards

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Terminology Artifacts

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Models and Formats

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Identifier Schemas

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Metrics

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Related Databases (2)
GABI-Kat SimpleSearch
T-DNA insertions in Arabidopsis and their flanking sequence tags.

The Arabidopsis Information Resource
The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. Data available from TAIR includes the complete genome sequence along with gene structure, gene product information, gene expression, DNA and seed stocks, genome maps, genetic and physical markers, publications, and information about the Arabidopsis research community. Gene product function data is updated every week from the latest published research literature and community data submissions.

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