standards > terminology artifact > DOI:10.25504/FAIRsharing.zmx7nn


ready Ontology of Genes and Genomes

Abbreviation: OGG


General Information
OGG is a biological ontology in the area of genes and genomes. OGG uses the Basic Formal Ontology (BFO) as its upper level ontology. This OGG document contains the genes and genomes of a list of selected organisms. Each gene in OGG has over 10 annotation items, includes gene-associated Gene Ontology (GO) and PubMed article information. OGG has represented genes in human, two viruses, and four bacteria. Additionally, 7 OGG subsets are developed to represent genes and genomes of 7 model systems including mouse, fruit fly, zebrafish, yeast, A. thaliana, C. elegans, and P. falciparum.

Homepage https://bitbucket.org/hegroup/ogg

Countries that developed this resource United States

Created in 2014

Taxonomic range

Knowledge Domains 




How to cite this record FAIRsharing.org: OGG; Ontology of Genes and Genomes; DOI: https://doi.org/10.25504/FAIRsharing.zmx7nn; Last edited: Jan. 8, 2019, 1:39 p.m.; Last accessed: May 24 2019 8:13 a.m.


This record is maintained by yongqunh

Record added: Oct. 24, 2017, 9:41 a.m.
Record updated: Feb. 27, 2018, 2:35 p.m. by The FAIRsharing Team.

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In Collections
OBO Foundry


Support

General

online documentation Issue Tracker

Additional Information

Contact Yongqun He   ORCID

External Links

Bioportal http://bioportal.bioontology.org/ontologies/OGG
OBO http://obofoundry.org/ontology/ogg.html

Tools

    No tools defined


Schemas

No XSD schemas defined


Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Access

Download OWL http://purl.obolibrary.org/obo/ogg.owl



Publications

OGG: a biological ontology for representing genes and genomes in specific organisms

He Y, Liu Y, Zhao B.
Proceedings of the 5th International Conference on Biomedical Ontologies (ICBO), Houston, Texas, USA. Pages 13-20 2014


OGG Ontology Display

View in BioPortal.


Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.

View in OBO Foundry.



Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined


Implementing Databases (1)
OBO Foundry
The Open Biological and Biomedical Ontology (OBO) Foundry is a collective of ontology developers that are committed to collaboration and adherence to shared principles. The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. To achieve this, OBO Foundry participants voluntarily adhere to and contribute to the development of an evolving set of principles including open use, collaborative development, non-overlapping and strictly-scoped content, and common syntax and relations, based on ontology models that work well, such as the Gene Ontology (GO). The OBO Foundry is overseen by an Operations Committee with Editorial, Technical and Outreach working groups.

Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

Funds

Maintains

Grant Number(s)

  • R01AI081062 (National Institutes of Health (NIH), Bethesda, MD, USA)