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GeneWeaver

General Information

The GeneWeaver data and analytics website is a publically available resource for storing, curating and analyzing sets of genes from heterogeneous data sources. The system enables discovery of relationships among genes, variants, traits, drugs, environments, anatomical structures and diseases implicitly found through gene set intersections. By enumerating the common and distinct biological molecules associated with all subsets of curated or user submitted groups of gene sets and gene networks, GeneWeaver empowers users with the ability to construct data driven descriptions of shared and unique biological processes, diseases and traits within and across species.

Homepage http://www.geneweaver.org

Countries that developed this resource United States

Created in 2007

Taxonomic range

Caenorhabditis elegans

Canis familiaris

Danio rerio

Drosophila melanogaster

Saccharomyces cerevisiae

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: GeneWeaver; GeneWeaver; DOI: https://doi.org/10.25504/FAIRsharing.1y79y9; Last edited: June 22, 2021, 11:59 a.m.; Last accessed: Oct 25 2021 12:04 p.m.

This record is maintained by erichbaker ORCID

Record added: Nov. 19, 2015, 3:15 p.m.
Record updated: June 2, 2021, 10:20 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.1y79y9' by 'The FAIRsharing Team' at 10:20, 02 Jun 2021 (approved):

	'licences' has been modified:
		Before:
			GeneWeaver Data Sharing|https://www.geneweaver.org/datasharing|Data
			GeneWeaver Privacy|https://www.geneweaver.org/privacy|Data
			GeneWeaver Usage|https://www.geneweaver.org/privacy|Data
		After:
			GeneWeaver Data Sharing|https://www.geneweaver.org/datasharing|Data
			GeneWeaver Privacy|https://www.geneweaver.org/privacy|Data
		Added:
		Removed:
			GeneWeaver Usage|https://www.geneweaver.org/privacy|Data

Edits to 'https://fairsharing.org/FAIRsharing.1y79y9' by 'The FAIRsharing Team' at 09:25, 20 Dec 2019 (approved):

	'grants' has been modified:
		Before:
			RO1 AA18776
			U01 AA13499
			U24AA13513
			U54 OD 020351
		After:
			RO1 AA18776
			U01 AA13499
			U24AA13513
			U54OD020351
		Added:
			U54OD020351
		Removed:
			U54 OD 020351

Edits to 'https://fairsharing.org/FAIRsharing.1y79y9' by 'The FAIRsharing Team' at 09:24, 20 Dec 2019 (approved):

	'organizations' has been modified:
		Before:
			Baylor University, Texas, USA|http://www.baylor.edu|Maintains
			Churchill Group, The Jackson Laboratory, Bar Harbor, ME, USA|http://churchill.jax.org/|Maintains
			University of Tennessee, USA|http://www.utk.edu|Maintains
			National Institute on Drug Abuse (NIDA), Bethesda, MD, USA|http://www.drugabuse.gov/|Funds
		After:
			National Institute on Drug Abuse (NIDA), Bethesda, MD, USA|http://www.drugabuse.gov/|Funds
			Baylor University, Texas, USA|http://www.baylor.edu|Maintains
			Churchill Group, The Jackson Laboratory, Bar Harbor, ME, USA|http://churchill.jax.org/|Maintains
			University of Tennessee, USA|http://www.utk.edu|Maintains
			JAX Center for Precision Genetics NIH|https://www.jax.org/research-and-faculty/research-centers/precision-genetics-center|Funds
		Added:
			JAX Center for Precision Genetics NIH|https://www.jax.org/research-and-faculty/research-centers/precision-genetics-center|Funds
		Removed:

	'supportLinks' has been modified:
		Before:
			online documentation|http://www.geneweaver.org/wiki
		After:
			help|https://www.geneweaver.org/help/
		Added:
			help|https://www.geneweaver.org/help/
		Removed:
			online documentation|http://www.geneweaver.org/wiki

	'licences' has been modified:
		Before:
		After:
			GeneWeaver Data Sharing|https://www.geneweaver.org/datasharing|Data
			GeneWeaver Privacy|https://www.geneweaver.org/privacy|Data
			GeneWeaver Usage|https://www.geneweaver.org/privacy|Data
		Added:
			GeneWeaver Data Sharing|https://www.geneweaver.org/datasharing|Data
			GeneWeaver Privacy|https://www.geneweaver.org/privacy|Data
			GeneWeaver Usage|https://www.geneweaver.org/privacy|Data
		Removed:

	'onto_domains' has been modified:
		Before:
			drug
			phenotype
		After:
			disease
			drug
			phenotype
		Added:
			disease
		Removed:

	'user_defined_tags' has been modified:
		Before:
		After:
			Environment
		Added:
			Environment
		Removed:

	'grants' has been modified:
		Before:
			RO1 AA18776
			U01 AA13499
			U24AA13513
		After:
			RO1 AA18776
			U01 AA13499
			U24AA13513
			U54 OD 020351
		Added:
			U54 OD 020351
		Removed:

	'miriam_id' has been modified:
		Before: None
		After: 

	'dataProcesses' has been modified:
		Before:
			search
			submit
		After:
			search
			register / login
			upload Genesets 
		Added:
			register / login
			upload Genesets 
		Removed:
			submit

	'tools' has been modified:
		Before:
			Analysis tools||http://www.geneweaver.org/index.php?action=analyze
		After:
			Analysis tools||https://www.geneweaver.org/register_or_login
		Added:
			Analysis tools||https://www.geneweaver.org/register_or_login
		Removed:
			Analysis tools||http://www.geneweaver.org/index.php?action=analyze

In Collections

TDR COVID-19 Participant-level data sharing platforms & registries

RDA Covid-19 WG Resources

Support

General

help	https://www.geneweaver.org/help/

Additional Information

Contact

Erich Baker ORCID

Tools

Analysis tools

https://www.geneweaver.org/register_or_login

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Curation

register / login	https://www.geneweaver.org/register_or_login
upload Genesets	No link recorded

Data Access

https://www.geneweaver.org/

Publications

GeneWeaver: a web-based system for integrative functional genomics.

Baker EJ,Jay JJ,Bubier JA,Langston MA,Chesler EJ
Nucleic Acids Res 2011

View Paper (PubMed) View Publication

GeneWeaver: finding consilience in heterogeneous cross-species functional genomics data.

Bubier JA,Phillips CA,Langston MA,Baker EJ,Chesler EJ
Mamm Genome 2015

View Paper (PubMed) View Publication

Ontological Discovery Environment: a system for integrating gene-phenotype associations.

Baker EJ,Jay JJ,Philip VM,Zhang Y,Li Z,Kirova R,Langston MA,Chesler EJ
Genomics 2009

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by erichbaker ORCID

Funds

National Institute on Drug Abuse (NIDA), Bethesda, MD, USA (Government body)
JAX Center for Precision Genetics NIH (Research institute)

Maintains

Baylor University, Texas, USA (University)
Churchill Group, The Jackson Laboratory, Bar Harbor, ME, USA (Lab)
University of Tennessee, USA (University)

Grant Number(s)

RO1 AA18776 (National Institute on Drug Abuse (NIDA), Bethesda, MD, USA)
U01 AA13499 (National Institute on Drug Abuse (NIDA), Bethesda, MD, USA)
U24AA13513 (National Institute on Drug Abuse (NIDA), Bethesda, MD, USA)
U54OD020351 (JAX Center for Precision Genetics NIH)

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