mz Markup Language
Abbreviation: mzML
This record replaces or incorporates the following deprecated resources:
Homepage http://www.psidev.info/mzml
Countries that developed this resource France , Germany , United Kingdom
Created in 2008
Taxonomic range
Knowledge Domains
Subjects
How to cite this record FAIRsharing.org: mzML; mz Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.26dmba; Last edited: Jan. 8, 2019, 1:27 p.m.; Last accessed: Jan 24 2021 12:11 a.m.
Record updated: Aug. 7, 2018, 12:39 p.m. by The FAIRsharing Team.
Conditions of Use
mzML--a community standard for mass spectrometry data.
Martens L, Chambers M, Sturm M, Kessner D, Levander F, Shofstahl J, Tang WH, Römpp A, Neumann S, Pizarro AD, Montecchi-Palazzi L, Tasman N, Coleman M, Reisinger F, Souda P, Hermjakob H, Binz PA, Deutsch EW.
Mol. Cell Proteomics 2011
ProteomeXchange provides globally coordinated proteomics data submission and dissemination.
Vizcaino JA,Deutsch EW,Wang R,Csordas A,Reisinger F,Rios D,Dianes JA,Sun Z,Farrah T,Bandeira N,Binz PA,Xenarios I,Eisenacher M,Mayer G,Gatto L,Campos A,Chalkley RJ,Kraus HJ,Albar JP,Martinez-Bartolome S,Apweiler R,Omenn GS,Martens L,Jones AR,Hermjakob H
Nat Biotechnol 2014
mzML--a community standard for mass spectrometry data.
Martens L,Chambers M,Sturm M,Kessner D,Levander F,Shofstahl J,Tang WH,Rompp A,Neumann S,Pizarro AD,Montecchi-Palazzi L,Tasman N,Coleman M,Reisinger F,Souda P,Hermjakob H,Binz PA,Deutsch EW
Mol Cell Proteomics 2010
Reporting Guidelines
Terminology Artifacts
No semantic standards defined
Models and Formats
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
Model Organism Protein Expression Database is a collection of data on protein expression sequence used in the study of clinical research.
MitoZoa
MitoZoa is a specialized database collecting complete and nearly-complete (longer than 7 kb) mtDNA entries of metazoan species, excluding Placozoa. MitoZoa contains curated entries, whose gene annotation has been significantly improved using a semi-automatic reannotation pipeline and by manual curation of mitogenomics experts. MitoZoa has been specifically designed to address comparative analyses of mitochondrial genomic features in a given metazoan group or in species belonging to the same genus (congeneric species). MitoZoa focuses on mitochondrial gene order, non-coding regions, gene content, and gene sequences.
PRoteomics IDEntifications database
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PeptideAtlas
The PeptideAtlas Project provides a publicly accessible database of peptides identified in tandem mass spectrometry proteomics studies and software tools.
World-2DPAGE Repository
A public standards-compliant repository for gel-based proteomics data linked to protein identification published in the literature. The repository is continuously extended, putting together a large collection of multi-species reference maps, with thousands of identified spots..
Japan Proteome Standard Repository
jPOSTrepo (Japan ProteOme STandard Repository) is a data repository of sharing MS raw/processed data.
Mass Spectrometry Virtual Interactive Environment
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Record Maintainer
Maintains
HUPO-PSI initiative; Quality Control working group (Consortium)
Ruhr-Universitat Bochum (University)
University of Liverpool, UK (University)
Universite de Lyon, France (University)