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BovineMine

General Information

BovineMine integrates the bovine reference genome assembly with many other biological data sets, including genomes of other species. The sheep and goat genomes allow comparison across ruminants. Model organism data (human, mouse, rat) allow well-curated data sets to be applied to ruminants using orthology.

Homepage http://bovinegenome.org/bovinemine

Countries that developed this resource United States

Taxonomic range

Knowledge Domains

Subjects

User-defined Tags

genomic variation

How to cite this record FAIRsharing.org: BovineMine; BovineMine; DOI: https://doi.org/10.25504/FAIRsharing.2Fwl0E; Last edited: March 19, 2021, 1:16 p.m.; Last accessed: Oct 21 2021 3:20 p.m.

This record is maintained by InterMineTeam

Record added: Nov. 20, 2018, 1:35 p.m.
Record updated: March 19, 2021, 1:16 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.2Fwl0E' by 'The FAIRsharing Team' at 13:16, 19 Mar 2021 (approved):

	'taxonomies' has been modified:
		Before:
			Bos taurus
		After:
			Bos taurus
			Capra hircus
			Homo sapiens
			Mus musculus
			Ovis aries
			Rattus norvegicus
		Added:
			Capra hircus
			Homo sapiens
			Mus musculus
			Ovis aries
			Rattus norvegicus
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.2Fwl0E' by 'The FAIRsharing Team' at 10:30, 24 Feb 2021 (approved):

	'grants' has been modified:
		Before:
			2007-35616-17882, 2010-65205-20407
			Grant agreement no. 613689
		After:
			2007-35616-17882
			2010-65205-20407
			Grant agreement no. 613689
		Added:
			2007-35616-17882
			2010-65205-20407
		Removed:
			2007-35616-17882, 2010-65205-20407

	'supportLinks' has been modified:
		Before:
			online documentation|http://bovinegenome.org/bovinemine/dataCategories.do
			online documentation|http://bovinegenome.org/bovinemine/network.do
			tess training|https://tess.elixir-europe.org/materials/intermine-user-tutorial
			tess training|https://tess.elixir-europe.org/materials/intermine-user-manual
		After:
			TeSS training|https://tess.elixir-europe.org/materials/intermine-user-tutorial
			TeSS training|https://tess.elixir-europe.org/materials/intermine-user-manual
			online documentation|http://bovinegenome.org/bovinemine/dataCategories.do
			online documentation|http://bovinegenome.org/bovinemine/network.do
		Added:
			TeSS training|https://tess.elixir-europe.org/materials/intermine-user-tutorial
			TeSS training|https://tess.elixir-europe.org/materials/intermine-user-manual
		Removed:
			tess training|https://tess.elixir-europe.org/materials/intermine-user-tutorial
			tess training|https://tess.elixir-europe.org/materials/intermine-user-manual

Edits to 'https://fairsharing.org/FAIRsharing.2Fwl0E' by 'The FAIRsharing Team' at 21:05, 12 Dec 2018 (approved):

	'supportLinks' has been modified:
		Before:
			online documentation|http://bovinegenome.org/bovinemine/dataCategories.do
			online documentation|http://bovinegenome.org/bovinemine/network.do
		After:
			online documentation|http://bovinegenome.org/bovinemine/dataCategories.do
			online documentation|http://bovinegenome.org/bovinemine/network.do
			tess training|https://tess.elixir-europe.org/materials/intermine-user-tutorial
			tess training|https://tess.elixir-europe.org/materials/intermine-user-manual
		Added:
			tess training|https://tess.elixir-europe.org/materials/intermine-user-tutorial
			tess training|https://tess.elixir-europe.org/materials/intermine-user-manual
		Removed:

In Collections

InterMine

Support

General

online documentation	Data Categories
online documentation	Data Model

Additional Information

Contact

Bovine Genome Database Administrator

TeSS training resources

InterMine user tutorial

InterMine user manual

Tools

No tools defined

Access / Retrieve Data

Conditions of Use

Applies to: Database software

GNU Lesser General Public License (LGPL) 2.1

Data Access

Search Within Genomic Regions	http://bovinegenome.org/bovinemine/genomicRegionSearch.do
Advanced Search (Query Builder)	http://bovinegenome.org/bovinemine/customQuery.do
Search Against A List	http://bovinegenome.org/bovinemine/bag.do
Search Via Pre-Defined Queries	http://bovinegenome.org/bovinemine/templates.do

REST Web Services

Web Service Client (Perl, Python, Ruby, Java)

http://bovinegenome.org/bovinemine/api.do

Publications

Bovine Genome Database: new tools for gleaning function from the Bos taurus genome.

Elsik CG,Unni DR,Diesh CM,Tayal A,Emery ML,Nguyen HN,Hagen DE
Nucleic Acids Res 2015

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by InterMineTeam

Funds

European Union's Seventh Framework Programme for research, technological development and demonstration (Government body)
National Institute of Food and Agriculture (NIFA), US Department of Agriculture (USDA), Washington DC, USA (Government body)

Maintains

University of Missouri, USA (University) Lead

Grant Number(s)

2007-35616-17882 (National Institute of Food and Agriculture (NIFA), US Department of Agriculture (USDA), Washington DC, USA)
2010-65205-20407 (National Institute of Food and Agriculture (NIFA), US Department of Agriculture (USDA), Washington DC, USA)
Grant agreement no. 613689 (European Union's Seventh Framework Programme for research, technological development and demonstration)

BovineMine

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