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Compilation and Creation of datasets from PDB

Abbreviation:ccPDB

General Information

ccPDB (Compilation and Creation of datasets from PDB) is a collection of commonly used data sets for structural or functional annotation of proteins. There are numerous datasets from the literature and the Protein Data Bank (PDB), which were used for developing methods to annotate proteins at the sequence (or residue) level. A tool is available for creating a wide range of customized data sets from PDB.

Homepage http://crdd.osdd.net/raghava/ccpdb/

Countries that developed this resource India

Created in 2011

Taxonomic range

All

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: ccPDB; Compilation and Creation of datasets from PDB; DOI: https://doi.org/10.25504/FAIRsharing.3vfc16; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Dec 03 2021 6:40 a.m.

Record updated: Sept. 14, 2016, 10:46 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.3vfc16' by 'The FAIRsharing Team' at 10:46, 14 Sep 2016 (approved):

	'description' has been modified:
		Before: ccPDB (Compilation and Creation of datasets from PDB) is a collection of commonly used data sets for structural or functional annotation of proteins. We have accumulated numerous data sets from the literature and from PDB, which were used for developing methods to annotate proteins at the sequence (or residue) level. A tool is available for creating a wide range of customized data sets from PDB.
		After: ccPDB (Compilation and Creation of datasets from PDB) is a collection of commonly used data sets for structural or functional annotation of proteins. There are numerous datasets from the literature and the Protein Data Bank (PDB), which were used for developing methods to annotate proteins at the sequence (or residue) level. A tool is available for creating a wide range of customized data sets from PDB.

In Collections

RDA Covid-19 WG Resources

Support

General

help	http://crdd.osdd.net/raghava/ccpdb/help. ...

Additional Information

Contact

Dr Gajendra P.S. Raghava

Tools

BLAST

http://crdd.osdd.net/raghava/ccpdb/blast.php

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Creative Commons Attribution-NonCommercial 3.0 Unported (CC BY-NC 3.0)

Data Curation

manual curation

No link recorded

Publications

ccPDB: compilation and creation of data sets from Protein Data Bank.

Singh H,Chauhan JS,Gromiha MM,Raghava GP
Nucleic Acids Res 2011

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Worldwide Protein Data Bank

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

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Funds

Department of Biotechnology, Ministry of Science and Technology, India (Government body)
Council of Scientific and Industrial Research, India (Government body)
Open Source Drug Discovery (OSDD) India

Maintains

Institute for Microbial Technology, Chandigarh, India

Compilation and Creation of datasets from PDB

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