ArrayExpress
Homepage https://www.ebi.ac.uk/arrayexpress/
Countries that developed this resource Austria , Belgium , Croatia , Czech Republic , Denmark , Finland , France , Germany , Greece , Hungary , Iceland , Israel , Italy , Lithuania , Luxembourg , Malta , Montenegro , Netherlands , Norway , Portugal , Republic of Ireland , Slovakia , Spain , Sweden , Switzerland , United Kingdom
Created in 2003
Taxonomic range
Knowledge Domains
Subjects
In the following recommendations:
How to cite this record FAIRsharing.org: ArrayExpress; ArrayExpress; DOI: https://doi.org/10.25504/FAIRsharing.6k0kwd; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Apr 21 2021 6:10 p.m.
Publication for citation ArrayExpress update – from bulk to single-cell expression data Awais Athar, Anja Füllgrabe, Nancy George, Haider Iqbal, Laura Huerta, Ahmed Ali, Catherine Snow, Nuno A Fonseca, Robert Petryszak, Irene Papatheodorou, Ugis Sarkans, Alvis Brazma; Nucleic Acids Research ; 2018; 10.1093/nar/gky964;
Record updated: Feb. 8, 2021, 8:18 p.m. by The FAIRsharing Team.
FAQ | ArrayExpress FAQ |
support email | Annotare Helpdesk |
help | Contact Page |
help | Help Pages |
online documentation | About |
rss | RSS Feed |
training | Functional genomics at the EBI |
@ArrayExpressEBI |
Additional Information
Contact | ArrayExpress Team |
TeSS training resources
ArrayExpress: Discover functional genomics data quickly and easily
Annotare | https://www.ebi.ac.uk/fg/annotare/ |
ArrayExpress Bioconductor Package | http://www.bioconductor.org/packages/release/bioc/html/ArrayExpress.ht ... |
Conditions of Use
Applies to: Data useData Curation
Submit | https://www.ebi.ac.uk/arrayexpress/submit/overview.html |
Data Access
Download | ftp://ftp.ebi.ac.uk/pub/databases/arrayexpress/data/ |
Browse | https://www.ebi.ac.uk/arrayexpress/browse.html |
REST Web Services
ArrayExpress Web Services | https://www.ebi.ac.uk/arrayexpress/help/programmatic_access.html |
ArrayExpress--a public repository for microarray gene expression data at the EBI.
Brazma A., Parkinson H., Sarkans U., Shojatalab M., Vilo J., Abeygunawardena N., Holloway E., Kapushesky M., Kemmeren P., Lara GG., Oezcimen A., Rocca-Serra P., Sansone SA.,
Nucleic Acids Res. 2003
ArrayExpress update-simplifying data submissions.
Kolesnikov N, Hastings E, Keays M, Melnichuk O, Tang YA, Williams E, Dylag M, Kurbatova N, Brandizi M, Burdett T, Megy K, Pilicheva E, Rustici G, Tikhonov A, Parkinson H, Petryszak R, Sarkans U, Brazma A.
Nucleic Acids Res 2014
ArrayExpress update – from bulk to single-cell expression data
Awais Athar, Anja Füllgrabe, Nancy George, Haider Iqbal, Laura Huerta, Ahmed Ali, Catherine Snow, Nuno A Fonseca, Robert Petryszak, Irene Papatheodorou, Ugis Sarkans, Alvis Brazma
Nucleic Acids Research 2018
Reporting Guidelines
Terminology Artifacts
Models and Formats
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
- BioSamples at the European Bioinformatics Institute
- Expression Atlas
- Bgee DataBase for Gene Expression Evolution
- European Nucleotide Archive
- Gene Expression Omnibus
- Stanford Microarray Database
- Database of Genomic Variants Archive
- FlyMine
- MGI Mouse Gene Expression Database
- ClinVar
- Gemma
- DataMed
- Cellosaurus
- Omics Discovery Index
- MUGEN mouse database
- Genomic Expression Archive
- BIOchemical PathwaY DataBase
- TISSUES
- PathosSystems Resource Integration Center Repository
- The Royal Society - Data sharing and mining
- Nature Publishing Group - Nature Genetics - Availability of Data and materials
- Nature Publishing Group - Nature Materials - Availability of Data and materials
- Nature Publishing Group - Nature Photonics - Availability of Data and materials
- Rockefeller University Press - Journal Of Experimental Medicine - Data Deposition
- Nature Publishing Group - Nature Structural & Molecular Biology - Availability of Data and materials
- MNI Open Research
- African Academy of Sciences Open Research Data Guidelines for Authors
- Wellcome Open Research Data Guidelines
- Cell Press - Trends In Biochemical Sciences - Instructions for Authors
- Nature Publishing Group - Nature Biotechnology - Availability of Data and materials
- Cold Spring Harbor Laboratory Press - Genes and Development - Instructions Regarding Data Submission
- Rockefeller University Press - Journal Of Cell Biology - Data Deposition
- F1000Research Data Policy
- Springer Nature - Nature Chemistry - Availability of Data and materials
- Cell Press - Cell - Information for Authors
- HRB Open Research
- Cell Press - Cell Host & Microbe - Information for Authors
- Cell Press - Cancer Cell - Information for Authors
- Springer Nature - Nature - Availability of Data and materials
- Springer Nature - Nature Methods - Availability of Data and Materials
- Elsevier - The Lancet - Information for Authors
- UCL Child Open Health Research
- Springer Nature - Nature Medicine - Availability of Data and materials
- Cell Press - Trends In Plant Science - Information for Authors
- Scientific Data Data Policy
- American Society of Clinical Oncology - Journal of Clinical Oncology - Manuscript Guidelines
- Elsevier - Lancet Neurology - Information for Authors
- Hindawi Research Data Policy
- Cell Press - Cell Metabolism - Information for Authors
- Cell Press - Molecular Cell - Information for Authors
- Gates Open Research Data Guidelines
- Elsevier's Data Policy
- American Association for the Advancement of Science - Science - Editorial Policies; Data Materials Availability
- Cold Spring Harbor Lab Press - Genome Research
- Cell Press - Developmental Cell - Information for Authors
- Cell Press - Neuron - Information for Authors
- Cell Press - Cell Stem Cell - Information for Authors
- Cell Press - Immunity - Information for Authors
- Oxford University Press - Journal Of The National Cancer Institute - Manuscript Preparation
- Cell Press - Current Biology - Information for Authors
- The Plant Cell - Instructions for Authors
- Nature Publishing Group - Nature Chemical Biology - Availability of Data and materials
- BioMed Central - Minimum Standards of Reporting Checklist
- American Society of Hematology - Blood - Manuscript Preparation
- Elsevier - Current Opinion in Cell Biology - Guide for Authors
- Elsevier - Lancet Oncology - Information for Authors
- Elsevier - Lancet Infectious Diseases - Information for Authors
- EMBO Press Recommended Databases and Data Standards
- Advanced Genetics
- GigaScience - Minimum Standards of Reporting Checklist
- eLife Recommended Repositories and Standards
- PeerJ Data and Materials Sharing Policies
- PLOS Recommended Data Repositories
- Nature Publishing Group - Nature Cell Biology - Availability of Data and materials
- Springer Nature - Nature Immunology - Availability of Data and materials
Record Maintainer
This record is maintained by arrayexpress1
Funds
European Molecular Biology Laboratory (EMBL), Heidelberg, Germany (Research institute)
European Commission (Government body)
National Center for Biomedical Ontology (NCBO), Stanford, CA, USA (Research institute)
National Institute of Biomedical Imaging and Bioengineering (NIBIB), USA (Government body)
National Science Foundation (NSF), USA (Government body)
Maintains
Functional Genomics Group, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, UK (Research institute) Lead
Jisc, Bristol, UK (Company)
Grant Number(s)
1127112 (National Science Foundation (NSF), USA)
BioMedBridges [284209] (European Commission)
CAGEKID [241669] (European Commission)
ENGAGE [201413] (European Commission)
EUROCANPLATFORM [260791] (European Commission)
EurocanPlatform [260791] (European Commission)
GEUVADIS [261123] (European Commission)
Gen2Phen [200754] (European Commission)
P41 HG003619 (National Institute of Biomedical Imaging and Bioengineering (NIBIB), USA)
SLING [226073] (European Commission)
SYBARIS [242220] (European Commission)
U54-HG004028 (National Center for Biomedical Ontology (NCBO), Stanford, CA, USA)