databases > DOI:10.25504/FAIRsharing.6k0kwd

ready ArrayExpress

Recommended
General Information
ArrayExpress is a database of functional genomics experiments that can be queried and the data downloaded. It includes gene expression data from microarray and high throughput sequencing studies. Data is collected to MIAME and MINSEQE standards. Experiments are submitted directly to ArrayExpress or are imported from the NCBI GEO database.

Homepage http://www.ebi.ac.uk/arrayexpress

Countries that developed this resource European Union , United Kingdom

Created in 2003

Taxonomic range

Subjects 





How to cite this record FAIRsharing.org: ArrayExpress; ArrayExpress; DOI: https://doi.org/10.25504/FAIRsharing.6k0kwd; Last edited: Nov. 5, 2019, 9:02 a.m.; Last accessed: Nov 19 2019 7:25 a.m.

Publication for citation  ArrayExpress update – from bulk to single-cell expression data Awais Athar, Anja Füllgrabe, Nancy George, Haider Iqbal, Laura Huerta, Ahmed Ali, Catherine Snow, Nuno A Fonseca, Robert Petryszak, Irene Papatheodorou, Ugis Sarkans, Alvis Brazma; Nucleic Acids Research ; 2018; 10.1093/nar/gky964;


This record is maintained by arrayexpress1

Record updated: Nov. 4, 2019, 9:06 p.m. by arrayexpress1.

Show edit history


In Collections
Data Citation Implementation
DNA Microarray
ELIXIR Core Data Resources and Deposition Databases



Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Curation

Manual and automated curation No link recorded

Data Access

Download ftp://ftp.ebi.ac.uk/pub/databases/arrayexpress/data/
Browse https://www.ebi.ac.uk/arrayexpress/browse.html
Submit https://www.ebi.ac.uk/arrayexpress/submit/overview.html

REST Web Services

ArrayExpress Web Services https://www.ebi.ac.uk/arrayexpress/help/programmatic_access.html


Publications

ArrayExpress--a public repository for microarray gene expression data at the EBI.

Brazma A., Parkinson H., Sarkans U., Shojatalab M., Vilo J., Abeygunawardena N., Holloway E., Kapushesky M., Kemmeren P., Lara GG., Oezcimen A., Rocca-Serra P., Sansone SA.,
Nucleic Acids Res. 2003

View Paper (PubMed) View Publication

ArrayExpress update-simplifying data submissions.

Kolesnikov N, Hastings E, Keays M, Melnichuk O, Tang YA, Williams E, Dylag M, Kurbatova N, Brandizi M, Burdett T, Megy K, Pilicheva E, Rustici G, Tikhonov A, Parkinson H, Petryszak R, Sarkans U, Brazma A.
Nucleic Acids Res 2014

View Paper (PubMed) View Publication

ArrayExpress update – from bulk to single-cell expression data

Awais Athar, Anja Füllgrabe, Nancy George, Haider Iqbal, Laura Huerta, Ahmed Ali, Catherine Snow, Nuno A Fonseca, Robert Petryszak, Irene Papatheodorou, Ugis Sarkans, Alvis Brazma
Nucleic Acids Research 2018

View Paper (PubMed) View Publication



Implementing Policies

Credit

Record Maintainer

Funds

Maintains

Grant Number(s)