databases > DOI:10.25504/FAIRsharing.6k0kwd

ready ArrayExpress

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General Information
ArrayExpress is a database of functional genomics experiments that can be queried and the data downloaded. It includes gene expression data from microarray and high throughput sequencing studies. Data is collected to MIAME and MINSEQE standards. Experiments are submitted directly to ArrayExpress or are imported from the NCBI GEO database.

Homepage http://www.ebi.ac.uk/arrayexpress

Countries that developed this resource Austria , Belgium , Croatia , Czech Republic , Denmark , Finland , France , Germany , Greece , Hungary , Iceland , Israel , Italy , Lithuania , Luxembourg , Malta , Montenegro , Netherlands , Norway , Portugal , Republic of Ireland , Slovakia , Spain , Sweden , Switzerland , United Kingdom

Created in 2003

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How to cite this record FAIRsharing.org: ArrayExpress; ArrayExpress; DOI: https://doi.org/10.25504/FAIRsharing.6k0kwd; Last edited: Feb. 11, 2020, 10:44 a.m.; Last accessed: Oct 21 2020 4:43 p.m.

Publication for citation  ArrayExpress update – from bulk to single-cell expression data Awais Athar, Anja Füllgrabe, Nancy George, Haider Iqbal, Laura Huerta, Ahmed Ali, Catherine Snow, Nuno A Fonseca, Robert Petryszak, Irene Papatheodorou, Ugis Sarkans, Alvis Brazma; Nucleic Acids Research ; 2018; 10.1093/nar/gky964;


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Record updated: Feb. 11, 2020, 10:44 a.m. by The FAIRsharing Team.

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Data Citation Implementation
DNA Microarray
EOSC-Life
ELIXIR Core Data Resources and Deposition Databases
RDA Covid-19 WG Resources



Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Curation

Submit https://www.ebi.ac.uk/arrayexpress/submit/overview.html

Data Access

Download ftp://ftp.ebi.ac.uk/pub/databases/arrayexpress/data/
Browse https://www.ebi.ac.uk/arrayexpress/browse.html

REST Web Services

ArrayExpress Web Services https://www.ebi.ac.uk/arrayexpress/help/programmatic_access.html


Publications

ArrayExpress--a public repository for microarray gene expression data at the EBI.

Brazma A., Parkinson H., Sarkans U., Shojatalab M., Vilo J., Abeygunawardena N., Holloway E., Kapushesky M., Kemmeren P., Lara GG., Oezcimen A., Rocca-Serra P., Sansone SA.,
Nucleic Acids Res. 2003

View Paper (PubMed) View Publication

ArrayExpress update-simplifying data submissions.

Kolesnikov N, Hastings E, Keays M, Melnichuk O, Tang YA, Williams E, Dylag M, Kurbatova N, Brandizi M, Burdett T, Megy K, Pilicheva E, Rustici G, Tikhonov A, Parkinson H, Petryszak R, Sarkans U, Brazma A.
Nucleic Acids Res 2014

View Paper (PubMed) View Publication

ArrayExpress update – from bulk to single-cell expression data

Awais Athar, Anja Füllgrabe, Nancy George, Haider Iqbal, Laura Huerta, Ahmed Ali, Catherine Snow, Nuno A Fonseca, Robert Petryszak, Irene Papatheodorou, Ugis Sarkans, Alvis Brazma
Nucleic Acids Research 2018

View Paper (PubMed) View Publication



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