databases > DOI:10.25504/FAIRsharing.6k0kwd

ready ArrayExpress

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General Information
ArrayExpress is a database of functional genomics experiments that can be queried and the data downloaded. It includes gene expression data from microarray and high throughput sequencing studies. Data is collected to MIAME and MINSEQE standards. Experiments are submitted directly to ArrayExpress or are imported from the NCBI GEO database.

Homepage http://www.ebi.ac.uk/arrayexpress

Countries that developed this resource European Union , United Kingdom

Created in 2003

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How to cite this record FAIRsharing.org: ArrayExpress; ArrayExpress; DOI: https://doi.org/10.25504/FAIRsharing.6k0kwd; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Sep 17 2019 5:26 p.m.

Publication for citation  ArrayExpress update-simplifying data submissions. Kolesnikov N, Hastings E, Keays M, Melnichuk O, Tang YA, Williams E, Dylag M, Kurbatova N, Brandizi M, Burdett T, Megy K, Pilicheva E, Rustici G, Tikhonov A, Parkinson H, Petryszak R, Sarkans U, Brazma A.; Nucleic Acids Res ; 2014; 10.1093/nar/gku1057;


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Record updated: Dec. 21, 2018, 1:17 p.m. by The FAIRsharing Team.

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In Collections
Data Citation Implementation
DNA Microarray
ELIXIR Core Data Resources and Deposition Databases



Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Curation

Manual and automated curation No link recorded

Data Access

Download ftp://ftp.ebi.ac.uk/pub/databases/arrayexpress/data/
Browse https://www.ebi.ac.uk/arrayexpress/browse.html
Submit https://www.ebi.ac.uk/arrayexpress/submit/overview.html

REST Web Services

ArrayExpress Web Services https://www.ebi.ac.uk/arrayexpress/help/programmatic_access.html


Publications

ArrayExpress--a public repository for microarray gene expression data at the EBI.

Brazma A., Parkinson H., Sarkans U., Shojatalab M., Vilo J., Abeygunawardena N., Holloway E., Kapushesky M., Kemmeren P., Lara GG., Oezcimen A., Rocca-Serra P., Sansone SA.,
Nucleic Acids Res. 2003

View Paper (PubMed) View Publication

ArrayExpress update-simplifying data submissions.

Kolesnikov N, Hastings E, Keays M, Melnichuk O, Tang YA, Williams E, Dylag M, Kurbatova N, Brandizi M, Burdett T, Megy K, Pilicheva E, Rustici G, Tikhonov A, Parkinson H, Petryszak R, Sarkans U, Brazma A.
Nucleic Acids Res 2014

View Paper (PubMed) View Publication



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