databases > DOI:10.25504/FAIRsharing.6y9h91
FAIRsharing is now available for record creation, update, and search at, please visit us there! Replacement of this read-only version of the legacy site with the new version of FAIRsharing is planned for early January 2022.

ready ProteomicsDB


General Information
ProteomicsDB is a protein-centric in-memory database for the exploration of large collections of quantitative mass spectrometry-based proteomics data. ProteomicsDB was first released in 2014 to enable the interactive exploration of the first draft of the human proteome. To date, it contains quantitative data from 78 projects totalling over 19k LC-MS/MS experiments. A standardized analysis pipeline enables comparisons between multiple datasets to facilitate the exploration of protein expression across hundreds of tissues, body fluids and cell lines. We recently extended the data model to enable the storage and integrated visualization of other quantitative omics data. This includes transcriptomics data from e. g. NCBI GEO, protein-protein interaction information from STRING, functional annotations from KEGG, drug-sensitivity/selectivity data from several public sources and reference mass spectra from the ProteomeTools project. The extended functionality transforms ProteomicsDB into a multi-purpose resource connecting quantification and meta-data for each protein. The rich user interface helps researchers to navigate all data sources in either a protein-centric or multi-protein-centric manner. Several options are available to download data manually, while our application programming interface enables accessing quantitative data systematically.


Countries that developed this resource Germany

Created in 2014

Taxonomic range

How to cite this record PrDB; ProteomicsDB; DOI:; Last edited: Jan. 8, 2019, 1:25 p.m.; Last accessed: Nov 26 2021 11:07 p.m.

This record is maintained by tkschmidt  ORCID

Record added: Oct. 22, 2017, 5:30 p.m.
Record updated: Oct. 23, 2017, 11:06 a.m. by The FAIRsharing Team.

Show edit history

In Collections



Additional Information


    No tools defined


Mass-spectrometry-based draft of the human proteome.

Wilhelm M,Schlegl J,Hahne H,Gholami AM,Lieberenz M,Savitski MM,Ziegler E,Butzmann L,Gessulat S,Marx H,Mathieson T,Lemeer S,Schnatbaum K,Reimer U,Wenschuh H,Mollenhauer M,Slotta-Huspenina J,Boese JH,Bantscheff M,Gerstmair A,Faerber F,Kuster B
Nature 2014

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined


No metrics standards defined

Implementing Policies

This record is not implemented by any policy.


Record Maintainer