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Gene Ontology Annotation Database

Abbreviation:GOA

Recommended

General Information

The GO Annotation Database (GOA) provides Gene Ontology (GO) annotations to proteins in the UniProt Knowledgebase (UniProtKB), RNA molecules from RNACentral and protein complexes from the Complex Portal. GOA files contain a mixture of manual annotation supplied by members of the Gene Onotology Consortium and computationally assigned GO terms describing gene products. Annotation type is clearly indicated by associated evidence codes and there are links to the source data.

Homepage http://www.ebi.ac.uk/GOA

Countries that developed this resource Austria , Belgium , Croatia , Czech Republic , Denmark , Finland , France , Germany , Greece , Hungary , Iceland , Israel , Italy , Lithuania , Luxembourg , Malta , Montenegro , Netherlands , Norway , Portugal , Republic of Ireland , Slovakia , Spain , Sweden , Switzerland , United Kingdom

Taxonomic range

All

Knowledge Domains

Subjects

In the following recommendations:

How to cite this record FAIRsharing.org: GOA; Gene Ontology Annotation Database; DOI: https://doi.org/10.25504/FAIRsharing.7zffgc; Last edited: Feb. 6, 2020, 12:42 p.m.; Last accessed: Jul 08 2020 1:58 p.m.

Publication for citation The GOA database: gene Ontology annotation updates for 2015. Huntley RP,Sawford T,Mutowo-Meullenet P,Shypitsyna A,Bonilla C,Martin MJ,O'Donovan C; Nucleic Acids Res ; 2014; 10.1093/nar/gku1113;

This record is maintained by orchard

Record updated: Feb. 6, 2020, 12:42 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.7zffgc' by 'The FAIRsharing Team' at 12:42, 06 Feb 2020 (approved):

	'related_databases' has been modified:
		Before:
			neXtProt
			PomBase
			Agile Protein Interactomes Dataserver
			MoonProt
			Hardwood Genomics Project
			Alliance of Genome Resources
			Complex Portal
			MedicMine
			BovineMine
			TargetMine
			Agronomic Linked Data
		After:
			neXtProt
			PomBase
			Agile Protein Interactomes Dataserver
			UniProt Knowledgebase
			MoonProt
			Hardwood Genomics Project
			Alliance of Genome Resources
			Complex Portal
			MedicMine
			BovineMine
			TargetMine
			Agronomic Linked Data
		Added:
			UniProt Knowledgebase
		Removed:

	'supportLinks' has been modified:
		Before:
			FAQ|http://www.ebi.ac.uk/GOA/faq
			contact form|http://www.ebi.ac.uk/GOA/contactus
			help|http://www.ebi.ac.uk/GOA/newto
		After:
			FAQ|https://www.ebi.ac.uk/GOA/faq
			contact form|http://www.ebi.ac.uk/GOA/contactus
			help|http://www.ebi.ac.uk/GOA/newto
		Added:
			FAQ|https://www.ebi.ac.uk/GOA/faq
		Removed:
			FAQ|http://www.ebi.ac.uk/GOA/faq

	'description' has been modified:
		Before: The GOA (Gene Ontology Annotation) project provides high-quality Gene Ontology (GO) annotations to proteins in the UniProt Knowledgebase (UniProtKB) and International Protein Index (IPI). This involves electronic annotation and the integration of high-quality manual GO annotation from all GO Consortium model organism groups and specialist groups.
		After: The GO Annotation Database (GOA) provides Gene Ontology (GO) annotations to proteins in the UniProt Knowledgebase (UniProtKB), RNA molecules from RNACentral and protein complexes from the Complex Portal. GOA files contain a mixture of manual annotation supplied by members of the Gene Onotology Consortium and computationally assigned GO terms describing gene products. Annotation type is clearly indicated by associated evidence codes and there are links to the source data.

	'countries' has been modified:
		Before:
			European Union
		After:
			Austria
			Belgium
			Croatia
			Czech Republic
			Denmark
			Finland
			France
			Germany
			Greece
			Hungary
			Iceland
			Israel
			Italy
			Lithuania
			Luxembourg
			Malta
			Montenegro
			Netherlands
			Norway
			Portugal
			Republic of Ireland
			Slovakia
			Spain
			Sweden
			Switzerland
			United Kingdom
		Added:
			Austria
			Belgium
			Croatia
			Czech Republic
			Denmark
			Finland
			France
			Germany
			Greece
			Hungary
			Iceland
			Israel
			Italy
			Lithuania
			Luxembourg
			Malta
			Montenegro
			Netherlands
			Norway
			Portugal
			Republic of Ireland
			Slovakia
			Spain
			Sweden
			Switzerland
			United Kingdom
		Removed:
			European Union

	'onto_disciplines' has been modified:
		Before:
			Life Science
		After:
			Biology
			Life Science
		Added:
			Biology
		Removed:

	'onto_domains' has been modified:
		Before:
			GO-term enrichment report
			gene
			protein
		After:
			Annotation
			GO-term enrichment report
			gene
			protein
			protein-containing complex
			ribonucleic acid
		Added:
			Annotation
			protein-containing complex
			ribonucleic acid
		Removed:

	'contactEmail' has been modified:
		Before: gohelp@genome.stanford.edu
		After: goa@ebi.ac.uk

	'name' has been modified:
		Before: Gene Ontology Annotation
		After: Gene Ontology Annotation Database

Edits to 'https://fairsharing.org/FAIRsharing.7zffgc' by 'The FAIRsharing Team' at 09:50, 17 Jan 2019 (approved):

	'dataProcesses' has been modified:
		Before:
			Manual and automated curation
			Download (FTP)
			Search Options
			Contributing to GOA
			Download Options
		After:
			Manual and automated curation
			Download (FTP)
			Search Options
			Contributing to GOA
			Download Options
			releases approximately every four weeks
		Added:
			releases approximately every four weeks
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.7zffgc' by 'The FAIRsharing Team' at 09:49, 17 Jan 2019 (approved):

	'organizations' has been modified:
		Before:
			Parkinson's UK|http://www.parkinsons.org.uk|Funds
			Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains
			The British Heart Foundation|https://www.bhf.org.uk|Funds
			National Human Genome Research Institute (NHGRI), Bethesda, MD, USA|http://www.genome.gov/|Funds
			European Molecular Biology Laboratory (EMBL), Heidelberg, Germany|http://www.embl.org|Funds
		After:
			Parkinson's UK|http://www.parkinsons.org.uk|Funds
			The British Heart Foundation|https://www.bhf.org.uk|Funds
			National Human Genome Research Institute (NHGRI), Bethesda, MD, USA|http://www.genome.gov/|Funds
			European Molecular Biology Laboratory (EMBL), Heidelberg, Germany|http://www.embl.org|Funds
			European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
		Added:
			European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
		Removed:
			Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains

	'standardsImplemented' has been modified:
		Before:
			Evidence codes
		After:
			Evidence codes
			Gene Ontology
		Added:
			Gene Ontology
		Removed:

	'publications' has been modified:
		Before:
			The GOA database in 2009--an integrated Gene Ontology Annotation resource.|Barrell D., Dimmer E., Huntley RP., Binns D., O'Donovan C., Apweiler R., |Nucleic Acids Res.|2009
		After:
			The GOA database in 2009--an integrated Gene Ontology Annotation resource.|Barrell D., Dimmer E., Huntley RP., Binns D., O'Donovan C., Apweiler R., |Nucleic Acids Res.|2009
			The GOA database: gene Ontology annotation updates for 2015.|Huntley RP,Sawford T,Mutowo-Meullenet P,Shypitsyna A,Bonilla C,Martin MJ,O'Donovan C|Nucleic Acids Res|2014
		Added:
			The GOA database: gene Ontology annotation updates for 2015.|Huntley RP,Sawford T,Mutowo-Meullenet P,Shypitsyna A,Bonilla C,Martin MJ,O'Donovan C|Nucleic Acids Res|2014
		Removed:

	'dataProcesses' has been modified:
		Before:
			Manual and automated curation
			Download
			search
			submit
		After:
			Manual and automated curation
			Download (FTP)
			Search Options
			Contributing to GOA
			Download Options
		Added:
			Download (FTP)
			Search Options
			Contributing to GOA
			Download Options
		Removed:
			Download
			search
			submit

Support

General

FAQ	GOA FAQ
contact form	Contact GOA
help	GOA Annotation Guide

Additional Information

Contact

General Enquiries

Tools

No tools defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0

Data Release

Download (FTP)	ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/
Download Options	https://www.ebi.ac.uk/GOA/downloads
releases approximately every four weeks	No link recorded

Data Curation

Manual and automated curation	No link recorded
Contributing to GOA	http://www.ebi.ac.uk/GOA/contribute

Data Access

Search Options

http://www.ebi.ac.uk/GOA/searching

Publications

The GOA database in 2009--an integrated Gene Ontology Annotation resource.

Barrell D., Dimmer E., Huntley RP., Binns D., O'Donovan C., Apweiler R.,
Nucleic Acids Res. 2009

View Paper (PubMed)

The GOA database: gene Ontology annotation updates for 2015.

Huntley RP,Sawford T,Mutowo-Meullenet P,Shypitsyna A,Bonilla C,Martin MJ,O'Donovan C
Nucleic Acids Res 2014

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Implementing Policies

Credit

Record Maintainer

This record is maintained by orchard

Funds

Parkinson's UK (Charitable foundation)
The British Heart Foundation (Charitable foundation)
National Human Genome Research Institute (NHGRI), Bethesda, MD, USA (Government body)
European Molecular Biology Laboratory (EMBL), Heidelberg, Germany (Research institute)

Maintains

European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK (Research institute) Lead

Grant Number(s)

1U41HG006104-03 (National Human Genome Research Institute (NHGRI), Bethesda, MD, USA)
5P41HG002273-09 (National Human Genome Research Institute (NHGRI), Bethesda, MD, USA)
G-1307 (Parkinson's UK)
RG/13/5/30112 (The British Heart Foundation)

Gene Ontology Annotation Database

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