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PLEXdb

General Information

PLEXdb (Plant Expression Database) is a unified gene expression resource for plants and plant pathogens. PLEXdb is a genotype to phenotype, hypothesis building information warehouse, leveraging highly parallel expression data with seamless portals to related genetic, physical, and pathway data.

Homepage http://www.plexdb.org/

Countries that developed this resource United States

Created in 2005

Taxonomic range

Fungi

Nematoda

Oomycetes

Sinorhizobium meliloti

Viridiplantae

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: PLEXdb; PLEXdb; DOI: https://doi.org/10.25504/FAIRsharing.8pjgwx; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 18 2022 12:44 a.m.

Record updated: Jan. 3, 2017, 12:24 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.8pjgwx' by 'The FAIRsharing Team' at 12:24, 03 Jan 2017 (approved):

	'description' has been modified:
		Before: Gene Expression Resources for Plants and Plant Pathogens
		After: PLEXdb (Plant Expression Database) is a unified gene expression resource for plants and plant pathogens. PLEXdb is a genotype to phenotype, hypothesis building information warehouse, leveraging highly parallel expression data with seamless portals to related genetic, physical, and pathway data.

Edits to 'https://fairsharing.org/FAIRsharing.8pjgwx' by 'The FAIRsharing Team' at 15:22, 29 Dec 2016 (approved):

	'name' has been modified:
		Before: PLEXdb: Gene Expression Resources for Plants and Plant Pathogens
		After: PLEXdb

In Collections

RDA Covid-19 WG Resources

Support

General

FAQ	http://www.plexdb.org/modules/documentat ...
contact form	http://www.plexdb.org/modules/PD_general ...

Additional Information

Contact

Julie A Dickerson

Tools

Gene List Suite	http://www.plexdb.org/modules/glSuite/gl_main.php
Gene OscilloScope	http://www.plexdb.org/modules/tools/genoscope/genoscope.php
BLAST	http://www.plexdb.org/modules/tools/plexdb_blast.php

Access / Retrieve Data

Conditions of Use

Data Versioning

no versioning policy	No link recorded
no access to historical files	No link recorded

Data Release

ad-hoc release

No link recorded

Data Curation

manual curation

No link recorded

Data Access

web interface	No link recorded
file download(txt,CSV,images)	No link recorded

Publications

BarleyBase/PLEXdb.

Wise RP., Caldo RA., Hong L., Shen L., Cannon E., Dickerson JA.,
Methods Mol. Biol. 2007

View Paper (PubMed)

PLEXdb: gene expression resources for plants and plant pathogens.

Dash S,Van Hemert J,Hong L,Wise RP,Dickerson JA
Nucleic Acids Res 2011

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

Affymetrix Raw Intensity Format

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

The Triticeae Toolbox

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

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Funds

National Science Foundation (NSF), USA (Government body)

Maintains

United States Department of Agriculture, Agricultural Research Service (USDA-ARS) (Government body)
Iowa State University, IA, USA (University)

PLEXdb

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