standards > reporting guideline > DOI:10.25504/FAIRsharing.8z3xzh


ready Minimum Information about a Molecular Interaction Experiment

Abbreviation: MIMIx


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General Information
MIMIx is a community guideline advising the user on how to fully describe a molecular interaction experiment and which information it is important to capture. The document is designed as a compromise between the necessary depth of information to describe all relevant aspects of the interaction experiment, and the reporting burden placed on the scientist generating the data.


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How to cite this record FAIRsharing.org: MIMIx; Minimum Information about a Molecular Interaction Experiment; DOI: https://doi.org/10.25504/FAIRsharing.8z3xzh; Last edited: Jan. 8, 2019, 1:31 p.m.; Last accessed: Sep 20 2019 3:47 p.m.

Publication for citation  The minimum information required for reporting a molecular interaction experiment (MIMIx). Orchard S,Salwinski L,Kerrien S,Montecchi-Palazzi L,Oesterheld M,Stumpflen V,Ceol A,Chatr-aryamontri A,Armstrong J,Woollard P,Salama JJ,Moore S,Wojcik J,Bader GD,Vidal M,Cusick ME,Gerstein M,Gavin AC,Superti-Furga G,Greenblatt J,Bader J,Uetz P,Tyers M,Legrain P,Fields S,Mulder N,Gilson M,Niepmann M,Burgoon L,De Las Rivas J,Prieto C,Perreau VM,Hogue C,Mewes HW,Apweiler R,Xenarios I,Eisenberg D,Cesareni G,Hermjakob H; Nat Biotechnol ; 2007; 10.1038/nbt1324;


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Record updated: July 30, 2018, 3:39 p.m. by The FAIRsharing Team.

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The minimum information required for reporting a molecular interaction experiment (MIMIx).

Orchard S,Salwinski L,Kerrien S,Montecchi-Palazzi L,Oesterheld M,Stumpflen V,Ceol A,Chatr-aryamontri A,Armstrong J,Woollard P,Salama JJ,Moore S,Wojcik J,Bader GD,Vidal M,Cusick ME,Gerstein M,Gavin AC,Superti-Furga G,Greenblatt J,Bader J,Uetz P,Tyers M,Legrain P,Fields S,Mulder N,Gilson M,Niepmann M,Burgoon L,De Las Rivas J,Prieto C,Perreau VM,Hogue C,Mewes HW,Apweiler R,Xenarios I,Eisenberg D,Cesareni G,Hermjakob H
Nat Biotechnol 2007

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Implementing Databases (4)
IntAct molecular interaction database
IntAct provides a freely available, open source database system and analysis tools for protein interaction data. All interactions are derived from literature curation or direct user submissions and are freely available.

Molecular INTeraction database
MINT focuses on experimentally verified protein-protein interactions mined from the scientific literature by expert curators. As of September 2013, This resource uses the IntAct database framework to help reduce the effort of scientists and improve on IT development. MINT is an ELIXIR Core Resource.

MatrixDB: Extracellular Matrix Interaction Database
MatrixDB stores experimental data established by full-length proteins, matricryptins, glycosaminoglycans, lipids and cations. MatrixDB reports interactions with individual polypeptide chains or with multimers (e.g. collagens, laminins, thrombospondins) when appropriate. Multimers are treated as permanent complexes, referencing EBI identifiers when possible. Human interactions were inferred from non-human homologous interactions when available.

ProteoRed
Carlos III Networked Proteomics Platform, ProteoRed-ISCIII is a National Network for the coordination, integration and development of the Spanish Proteomics Facilities providing proteomics services for supporting Spanish researchers in the field of proteomics.