4DNucleome Data Portal
Abbreviation:4DN
General Information
The 4D Nucleome Data Portal (4DN) hosts data generated by the 4DN Network and other reference nucleomics data sets, and an expanding tool set for open data processing and visualization. It is a platform to search, visualize, and download nucleomics data.
How to cite this record
FAIRsharing.org: 4DN; 4DNucleome Data Portal; DOI: https://doi.org/10.25504/FAIRsharing.CugtbQ;
Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Dec 11 2019 4:57 p.m.
Record added: April 17, 2019, 4:59 p.m.
Record updated:
April 17, 2019, 8:27 p.m. by The FAIRsharing Team.
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Edits to 'https://fairsharing.org/FAIRsharing.CugtbQ' by 'The FAIRsharing Team' at 20:27, 17 Apr 2019 (approved):
'organizations' has been modified:
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NIH Common Fund, USA|https://commonfund.nih.gov|Funds
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NIH Common Fund, USA|https://commonfund.nih.gov|Funds
Data Coordination and Intregration Center|http://dcic.4dnucleome.org/|Maintains
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Data Coordination and Intregration Center|http://dcic.4dnucleome.org/|Maintains
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'supportLinks' has been modified:
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help|https://data.4dnucleome.org/help/user-guide
online documentation|https://data.4dnucleome.org/help/about/about-dcic
online documentation|https://data.4dnucleome.org/help/user-guide/biosample-metadata
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help|https://data.4dnucleome.org/help/user-guide
online documentation|https://data.4dnucleome.org/help/about/about-dcic
online documentation|https://data.4dnucleome.org/help/user-guide/biosample-metadata
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'description' has been modified:
Before: A platform to search, visualize, and download nucleomics data.
After: The 4D Nucleome Data Portal (4DN) hosts data generated by the 4DN Network and other reference nucleomics data sets, and an expanding tool set for open data processing and visualization. It is a platform to search, visualize, and download nucleomics data.
'dataProcesses' has been modified:
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4DN REST API
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Submit Data
Analysis and Visualization
Browse Data
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Submit Data
Analysis and Visualization
Browse Data
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4DN REST API
'onto_domains' has been modified:
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chromosome
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Experiment report
Experimental measurement
Nucleic acid sequence
chromosome
data transformation
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Experiment report
Experimental measurement
Nucleic acid sequence
data transformation
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'accessPoints' has been modified:
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REST|https://data.4dnucleome.org/help/user-guide/rest-api|4DN REST API
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REST|https://data.4dnucleome.org/help/user-guide/rest-api|4DN REST API
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Edits to 'https://fairsharing.org/FAIRsharing.CugtbQ' by '4dn_dcic' at 17:20, 17 Apr 2019 (approved):
'standardsImplemented' has been modified:
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Experimental Factor Ontology
Binary Alignment Map Format
Big Browser Extensible Data Format
bigWig Track Format
FASTQ Sequence and Sequence Quality Format
BEDgraph
Common Workflow Language
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Experimental Factor Ontology
Binary Alignment Map Format
Big Browser Extensible Data Format
bigWig Track Format
FASTQ Sequence and Sequence Quality Format
BEDgraph
Common Workflow Language
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'related_databases' has been modified:
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Gene Expression Omnibus
Sequence Read Archive
ENCODE Project
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Gene Expression Omnibus
Sequence Read Archive
ENCODE Project
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'onto_disciplines' has been modified:
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Life Sciences
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Life Sciences
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'dataProcesses' has been modified:
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4DN REST API
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4DN REST API
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'onto_domains' has been modified:
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chromosome
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chromosome
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'tools' has been modified:
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Submit 4DN|1.1.0|https://github.com/4dn-dcic/submit4dn
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Submit 4DN|1.1.0|https://github.com/4dn-dcic/submit4dn
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Access / Retrieve Data
Conditions of Use
Data Curation
Data Access
REST Web Services
Publications
The 4D nucleome project.
Dekker J,Belmont AS,Guttman M,Leshyk VO,Lis JT,Lomvardas S,Mirny LA,O'Shea CC,Park PJ,Ren B,Politz JCR,Shendure J,Zhong S
Nature 2017
View Paper (PubMed)
View Publication
Related Standards
Reporting Guidelines
No guidelines defined
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
Implementing Policies
This record is not implemented by any policy.
Credit
Funds
Maintains
Grant Number(s)
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