Animal Quantitative Trait Loci (QTL) Database

Abbreviation:Animal QTLdb

General Information

The Animal Quantitative Trait Loci (QTL) Database (Animal QTLdb) strives to collect all publicly available trait mapping data, i.e. QTL (phenotype/expression, eQTL), candidate gene and association data (GWAS), and copy number variations (CNV) mapped to livestock animal genomes, in order to facilitate locating and comparing discoveries within and between species. New data and database tools are continually developed to align various trait mapping data to map-based genome features such as annotated genes.

Homepage https://www.animalgenome.org/QTLdb

Countries that developed this resource United States

Created in 2004

Taxonomic range

Knowledge Domains

Subjects

User-defined Tags

Livestock

How to cite this record FAIRsharing.org: Animal QTLdb; Animal Quantitative Trait Loci (QTL) Database; DOI: https://doi.org/10.25504/FAIRsharing.HO0DyR; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Sep 24 2020 2:35 a.m.

This record is maintained by zhilianghu ORCID

Record added: March 6, 2018, 3:58 a.m.
Record updated: Oct. 16, 2018, 10:01 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.HO0DyR' by 'The FAIRsharing Team' at 10:01, 16 Oct 2018 (approved):

	'standardsImplemented' has been modified:
		Before:
			Vertebrate Trait Ontology
			Livestock Product Trait Ontology
			Clinical Measurement Ontology
		After:
			Vertebrate Trait Ontology
			Livestock Product Trait Ontology
			Clinical Measurement Ontology
			Minimal Information for QTLs and Association Studies
		Added:
			Minimal Information for QTLs and Association Studies
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.HO0DyR' by 'zhilianghu' at 14:58, 07 Mar 2018 (approved):

	'miriam_url' has been modified:
		Before: None
		After:

Edits to 'https://fairsharing.org/FAIRsharing.HO0DyR' by 'The FAIRsharing Team' at 14:39, 07 Mar 2018 (approved):

	'name' has been modified:
		Before: Animal QTLdb
		After: Animal Quantitative Trait Loci (QTL) Database

Edits to 'https://fairsharing.org/FAIRsharing.HO0DyR' by 'zhilianghu' at 13:56, 07 Mar 2018 (approved):

	'related_standards' has been modified:
		Before:
		After:
			bsg-s002749|Vertebrate Trait Ontology
			bsg-s000863|Livestock Product Trait Ontology
			bsg-s002713|Clinical Measurement Ontology
		Added:
			bsg-s002749|Vertebrate Trait Ontology
			bsg-s000863|Livestock Product Trait Ontology
			bsg-s002713|Clinical Measurement Ontology
		Removed:

In Collections

AgBioData

Support

General

FAQ	FAQ: An User Guide to the QTLdb
contact form	Contact Form
online documentation	Video Tutorials

Additional Information

Contact

Zhiliang Hu ORCID

Tools

GBrowse	https://www.animalgenome.org/gbrowse
JBrowse	https://www.animalgenome.org/jbrowse

Access / Retrieve Data

Conditions of Use

Data Curation

Batch Data Submission

https://www.animalgenome.org/QTLdb/doc/batchdata

Data Access

Data Download

https://www.animalgenome.org/QTLdb/doc/download

REST Web Services

The Application Program Interface (API) provides a portal for programmable access to the Animal QTLdb contents.

https://www.animalgenome.org/QTLdb/API/

Publications

Developmental progress and current status of the Animal QTLdb

Zhi-Liang Hu, Carissa A. Park, James M. Reecy
Nucleic Acids Research 2016

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

Minimal Information for QTLs and Association Studies

Terminology Artifacts

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by zhilianghu ORCID

Maintains

Iowa State University, IA, USA (University)

Animal Quantitative Trait Loci (QTL) Database

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