FAANG metadata analysis specification
Created in 2016
How to cite this record FAIRsharing.org: FAANG metadata analysis specification; FAANG metadata analysis specification; DOI: https://doi.org/10.25504/FAIRsharing.J1aPiC; Last edited: Feb. 8, 2021, 1:22 p.m.; Last accessed: Oct 26 2021 4:06 p.m.
Record added: Feb. 13, 2020, 1:46 p.m.
Record updated: Feb. 8, 2021, 12:17 p.m. by The FAIRsharing Team.
Edits to 'https://fairsharing.org/FAIRsharing.J1aPiC' by 'The FAIRsharing Team' at 12:17, 08 Feb 2021 (approved): 'dataProcesses' has been modified: Before: After: View Specification, data release, https://github.com/FAANG/dcc-metadata/blob/master/docs/faang_analysis_metadata.md Added: View Specification, data release, https://github.com/FAANG/dcc-metadata/blob/master/docs/faang_analysis_metadata.md Removed: 'onto_domains' has been modified: Before: Analysis Experiment report After: Analysis ChIP-seq assay Experimental measurement RNA-seq assay protocol whole genome sequencing assay Added: ChIP-seq assay Experimental measurement RNA-seq assay protocol whole genome sequencing assay Removed: Experiment report
|FAANG Metadata Validation Tool||http://www.ebi.ac.uk/vg/faang|
No XSD schemas defined
Conditions of UseApplies to: Data use Applies to: Database software
|View Specification||https://github.com/FAANG/dcc-metadata/blob/master/docs/faang_analysis_ ...|
No publications available
No semantic standards defined
Models and Formats
No syntax standards defined
No identifier schema standards defined
No metrics standards defined
The BioSamples database aggregates sample information for reference samples (e.g. Coriell Cell lines) and samples for which data exist in one of the EBI's assay databases such as ArrayExpress, the European Nucleotide Archive or PRIDE. It provides links to assays and specific samples, and accepts direct submissions of sample information.
The NCBI BioSample database stores submitter-supplied descriptive information, or metadata, about the biological materials from which data stored in NCBI’s primary data archives are derived. NCBI’s archives host data from diverse types of samples from any species, so the BioSample database is similarly diverse; typical examples of a BioSample include a cell line, a primary tissue biopsy, an individual organism or an environmental isolate. The BioSample database promotes the use of structured and consistent attribute names and values that describe what the samples are as well as information about their provenance, where appropriate.
This record is not implemented by any policy.
Functional Annotation of Animal Genomes (FAANG) Administrators (Consortium) Lead