standards > model/format > DOI:10.25504/FAIRsharing.Nx0ddm


ready Adaptive Immune Receptor Repertoire Data Model

Abbreviation: AIRR Data Model


General Information
The MiAIRR standard defines the minimal information for submission and publication of AIRR-seq datasets. The Adaptive Immune Receptor Repertoire (AIRR) Data Model defines a schema for the MiAIRR data elements, structuring them within schema objects, defining the relationship between those objects, and defining a file format. Increased interest in the immune system's involvement in pathophysiological phenomena coupled with decreased DNA sequencing costs have led to an explosion of antibody and T cell receptor sequencing data collectively termed "adaptive immune receptor repertoire sequencing" (AIRR-seq or Rep-Seq). The AIRR Community has been actively working to standardize protocols, metadata, formats, APIs, and other guidelines to promote open and reproducible studies of the immune repertoire.

Homepage https://docs.airr-community.org/en/stable/datarep/overview.html

Countries that developed this resource Worldwide

Created in 2020

Knowledge Domains 




How to cite this record FAIRsharing.org: AIRR Data Model; Adaptive Immune Receptor Repertoire Data Model; DOI: https://doi.org/10.25504/FAIRsharing.Nx0ddm; Last edited: Jan. 25, 2021, 4:29 p.m.; Last accessed: Jun 19 2021 4:33 a.m.

Publication for citation  AIRR Community Standardized Representations for Annotated Immune Repertoires. Vander Heiden JA,Marquez S,Marthandan N,Bukhari SAC,Busse CE,Corrie B,Hershberg U,Kleinstein SH,Matsen Iv FA,Ralph DK,Rosenfeld AM,Schramm CA,Christley S,Laserson U; Front Immunol ; 2018; 10.3389/fimmu.2018.02206;


This record is maintained by bcorrie  ORCID

Record added: Oct. 6, 2020, 10:49 a.m.
Record updated: Oct. 6, 2020, 10:49 a.m. by The FAIRsharing Team.



In Collections
AIRR Data Commons


Support

General

online documentation GitHub Project

Additional Information

Contact Brian Corrie   ORCID

Tools

    No tools defined


Schemas

No XSD schemas defined


Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Release

Download Full Schema https://github.com/airr-community/airr-standards/blob/master/specs/air ...



Publications

AIRR Community Standardized Representations for Annotated Immune Repertoires.

Vander Heiden JA,Marquez S,Marthandan N,Bukhari SAC,Busse CE,Corrie B,Hershberg U,Kleinstein SH,Matsen Iv FA,Ralph DK,Rosenfeld AM,Schramm CA,Christley S,Laserson U
Front Immunol 2018

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