standards > reporting guideline > DOI:10.25504/FAIRsharing.ap169a
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ready Minimal Information Required In the Annotation of Models

Abbreviation: MIRIAM


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General Information
The Minimal Information Required In the Annotation of Models (MIRIAM), initiated by the BioModels.net effort, is a set of guidelines for the consistent annotation and curation of computational models in biology. It is suitable for use with any structured format for computational models.


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How to cite this record FAIRsharing.org: MIRIAM; Minimal Information Required In the Annotation of Models; DOI: https://doi.org/10.25504/FAIRsharing.ap169a; Last edited: June 22, 2021, 2:27 p.m.; Last accessed: Jul 29 2021 9:13 a.m.

Publication for citation  Minimum information requested in the annotation of biochemical models (MIRIAM). Nicolas Le Novère, Andrew Finney, Michael Hucka, Upinder S Bhalla, Fabien Campagne, Julio Collado-Vides, Edmund J Crampin, Matt Halstead, Edda Klipp, Pedro Mendes, Poul Nielsen, Herbert Sauro, Bruce Shapiro, Jacky L Snoep, Hugh D Spence, Barry L Wanner; Nat. Biotechnol. ; 2005; 10.1038/nbt1156;


This record is maintained by matthiaskoenig  ORCID

Record updated: June 22, 2021, 2:27 p.m. by The FAIRsharing Team.

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Minimum information requested in the annotation of biochemical models (MIRIAM).

Nicolas Le Novère, Andrew Finney, Michael Hucka, Upinder S Bhalla, Fabien Campagne, Julio Collado-Vides, Edmund J Crampin, Matt Halstead, Edda Klipp, Pedro Mendes, Poul Nielsen, Herbert Sauro, Bruce Shapiro, Jacky L Snoep, Hugh D Spence, Barry L Wanner
Nat. Biotechnol. 2005

View Paper (PubMed) View Publication

Identifiers.org and MIRIAM Registry: community resources to provide persistent identification.

Juty N,Le Novere N,Laibe C
Nucleic Acids Res 2011

View Paper (PubMed) View Publication

MIRIAM Resources: tools to generate and resolve robust cross-references in Systems Biology.

Laibe C,Le Novere N
BMC Syst Biol 2007

View Paper (PubMed) View Publication


Related Databases (5)
Identifiers.org Central Registry
The Identifiers.org Central Registry provides the necessary information for the generation and resolution of unique and perennial identifiers for life science data. Those identifiers are both in URI and compact form, and make use of Identifiers.org to provide direct access to the identified data records on the Web. Resource maintainers request an Identifiers.org prefix for their databases or services.

BioModels
BioModels is a repository of computational models of biological processes. It allows users to search and retrieve mathematical models published in the literature. Many models are manually curated (to ensure reproducibility) and extensively cross-linked to publicly available reference information.

YEASTNET: A consensus reconstruction of yeast metabolism
This is a portal to the consensus yeast metabolic network as reconstructed from the genome sequence and literature. It is a highly annotated metabolic map of Saccharomyces cerevisiae S288c that is periodically updated by a team of collaborators from various research groups.

JWS Online
JWS Online is a Systems Biology tool for the construction, modification and simulation of kinetic models and for the storage of curated models.

BiGG Models
BiGG Models is a knowledgebase of genome-scale metabolic network reconstructions. BiGG Models integrates more than 70 published genome-scale metabolic networks into a single database with a set of standardized identifiers called BiGG IDs.


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  • BB/E005748/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)

  • JPA 1729 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)