Edits to 'https://fairsharing.org/FAIRsharing.dnxzmk' by 'The FAIRsharing Team' at 20:35, 08 Feb 2021 (approved):
'supportLinks' has been modified:
Before:
email|synapseinfo@sagebionetworks.org
help|https://docs.synapse.org/
online documentation|https://docs.synapse.org/articles/governance.html
online documentation|https://docs.synapse.org/articles/accounts_certified_users_and_profile_validation.html
online documentation|https://www.synapse.org/#!StandaloneWiki:ResearchCommunities
online documentation|https://www.synapse.org/#!StandaloneWiki:OpenResearchProjects
After:
FAQ|https://docs.synapse.org/articles/faq.html
email|SynapseInfo@sagebase.org
forum|https://www.synapse.org/#!SynapseForum:default
help|https://docs.synapse.org/
online documentation|https://docs.synapse.org/articles/accounts_certified_users_and_profile_validation.html
online documentation|https://www.synapse.org/#!StandaloneWiki:ResearchCommunities
online documentation|https://www.synapse.org/#!StandaloneWiki:OpenResearchProjects
online documentation|https://docs.synapse.org/articles/governance.html
Added:
FAQ|https://docs.synapse.org/articles/faq.html
email|SynapseInfo@sagebase.org
forum|https://www.synapse.org/#!SynapseForum:default
Removed:
email|synapseinfo@sagebionetworks.org
'description' has been modified:
Before: Synapse is a collaborative, open-source research platform that allows teams to share data, track analyses, and collaborate. It provides infrastructure and hosting for datasets.
After: Synapse is a collaborative research platform that allows individuals and teams to share, track, and discuss their data and analysis in projects. Synapse allows researchers to share and describe data, analyses, and other content. Data and analyses can be stored in many types of locations, including private servers, local hard drives, or cloud storage. Synapse provides a common interface to describe these data or analyses, where they come from, and how to use them. Synapse also provides mechanisms for adding and retrieving data, analyses, and their respective descriptions.
'licences' has been modified:
Before:
Creative Commons Attribution 4.0 International (CC BY 4.0)|https://creativecommons.org/licenses/by/4.0/|Data
Synapse Apache 2.0|https://github.com/Sage-Bionetworks/Synapse-Repository-Services/blob/develop/LICENSE|Software
After:
Creative Commons Attribution 4.0 International (CC BY 4.0)|https://creativecommons.org/licenses/by/4.0/|Data
Synapse Apache 2.0|https://github.com/Sage-Bionetworks/Synapse-Repository-Services/blob/develop/LICENSE|Software
Synapse Terms of Use|https://s3.amazonaws.com/static.synapse.org/governance/SageBionetworksSynapseTermsandConditionsofUse.pdf?v=4|Data
Added:
Synapse Terms of Use|https://s3.amazonaws.com/static.synapse.org/governance/SageBionetworksSynapseTermsandConditionsofUse.pdf?v=4|Data
Removed:
'dataProcesses' has been modified:
Before:
After:
Search, data access, https://www.synapse.org/
Added:
Search, data access, https://www.synapse.org/
Removed:
'onto_domains' has been modified:
Before:
Experiment report
data storage
After:
Experimental measurement
data storage
protocol
Added:
Experimental measurement
protocol
Removed:
Experiment report
'accessPoints' has been modified:
Before:
REST|https://repo-prod.prod.sagebase.org/repo/v1|Synapse REST APIs
After:
REST|http://rest-docs.synapse.org/rest/|Synapse REST APIs
Added:
REST|http://rest-docs.synapse.org/rest/|Synapse REST APIs
Removed:
REST|https://repo-prod.prod.sagebase.org/repo/v1|Synapse REST APIs
Edits to 'https://fairsharing.org/FAIRsharing.dnxzmk' by 'The FAIRsharing Team' at 10:46, 18 Dec 2018 (approved):
'organizations' has been modified:
Before:
NIH LINCS Program, USA|http://www.lincsproject.org|Funds
National Institutes of Health (NIH), Bethesda, MD, USA|http://www.nih.gov|Funds
Oregon Health & Science University, USA|http://www.ohsu.edu/xd/education/library/about/departments/ontology-development.cfm|Maintains
After:
Sage Bionetworks|http://sagebionetworks.org/|Maintains
Added:
Sage Bionetworks|http://sagebionetworks.org/|Maintains
Removed:
NIH LINCS Program, USA|http://www.lincsproject.org|Funds
National Institutes of Health (NIH), Bethesda, MD, USA|http://www.nih.gov|Funds
Oregon Health & Science University, USA|http://www.ohsu.edu/xd/education/library/about/departments/ontology-development.cfm|Maintains
'standardsImplemented' has been modified:
Before:
UBER anatomy ONtology
Chemical Entities of Biological Interest
Investigation Study Assay Tabular
Systematized Nomenclature of Medicine-Clinical Terms
Open Microscopy Environment eXtensible Markup Language
NCBI Taxonomy
Medical Subject Headings
After:
Added:
Removed:
UBER anatomy ONtology
Chemical Entities of Biological Interest
Investigation Study Assay Tabular
Systematized Nomenclature of Medicine-Clinical Terms
Open Microscopy Environment eXtensible Markup Language
NCBI Taxonomy
Medical Subject Headings
'accessPoints' has been modified:
Before:
After:
REST|https://repo-prod.prod.sagebase.org/repo/v1|Synapse REST APIs
Added:
REST|https://repo-prod.prod.sagebase.org/repo/v1|Synapse REST APIs
Removed:
'supportLinks' has been modified:
Before:
After:
email|synapseinfo@sagebionetworks.org
help|https://docs.synapse.org/
online documentation|https://docs.synapse.org/articles/governance.html
online documentation|https://docs.synapse.org/articles/accounts_certified_users_and_profile_validation.html
online documentation|https://www.synapse.org/#!StandaloneWiki:ResearchCommunities
online documentation|https://www.synapse.org/#!StandaloneWiki:OpenResearchProjects
Added:
email|synapseinfo@sagebionetworks.org
help|https://docs.synapse.org/
online documentation|https://docs.synapse.org/articles/governance.html
online documentation|https://docs.synapse.org/articles/accounts_certified_users_and_profile_validation.html
online documentation|https://www.synapse.org/#!StandaloneWiki:ResearchCommunities
online documentation|https://www.synapse.org/#!StandaloneWiki:OpenResearchProjects
Removed:
'name' has been modified:
Before: Microenvironment Perturbagen LINCS Center image server
After: Synapse
'licences' has been modified:
Before:
No restrictions||Data
After:
Synapse Apache 2.0|https://github.com/Sage-Bionetworks/Synapse-Repository-Services/blob/develop/LICENSE|Software
Creative Commons Attribution 4.0 International (CC BY 4.0)|https://creativecommons.org/licenses/by/4.0/|Data
Added:
Synapse Apache 2.0|https://github.com/Sage-Bionetworks/Synapse-Repository-Services/blob/develop/LICENSE|Software
Creative Commons Attribution 4.0 International (CC BY 4.0)|https://creativecommons.org/licenses/by/4.0/|Data
Removed:
No restrictions||Data
'tools' has been modified:
Before:
After:
Synapse R Client||https://sage-bionetworks.github.io/ran/
Synapse Python Client||https://pypi.org/project/synapseclient/
Synapse Command-Line Client||http://docs.synapse.org/python/build/html/CommandLineClient.html
Synapse Java Client||https://github.com/Sage-Bionetworks/Synapse-Repository-Services/blob/develop/client/synapseJavaClient/src/main/java/org/sagebionetworks/client/SynapseClient.java
Added:
Synapse R Client||https://sage-bionetworks.github.io/ran/
Synapse Python Client||https://pypi.org/project/synapseclient/
Synapse Command-Line Client||http://docs.synapse.org/python/build/html/CommandLineClient.html
Synapse Java Client||https://github.com/Sage-Bionetworks/Synapse-Repository-Services/blob/develop/client/synapseJavaClient/src/main/java/org/sagebionetworks/client/SynapseClient.java
Removed:
'yearOfCreation' has been modified:
Before: 2016
After: 2010
'onto_disciplines' has been modified:
Before:
Life Sciences
After:
Biomedical Science
Data Integration and Warehousing
Data Management
Added:
Biomedical Science
Data Integration and Warehousing
Data Management
Removed:
Life Sciences
'onto_domains' has been modified:
Before:
Biological imaging
imaging technique
transcript
After:
Experiment report
data storage
Added:
Experiment report
data storage
Removed:
Biological imaging
imaging technique
transcript
'contact' has been modified:
Before: Damir Sudar
After: Meredith Slota
'contactEmail' has been modified:
Before: sudard@ohsu.edu
After: meredith.slota@sagebionetworks.org
'user_defined_tags' has been modified:
Before:
After:
Data sharing
Added:
Data sharing
Removed:
'grants' has been modified:
Before:
U54 HG008100
After:
Added:
Removed:
U54 HG008100
'publications' has been modified:
Before:
After:
Enabling transparent and collaborative computational analysis of 12 tumor types within The Cancer Genome Atlas.|Omberg L,Ellrott K,Yuan Y,Kandoth C,Wong C,Kellen MR,Friend SH,Stuart J,Liang H,Margolin AA|Nat Genet|2013
Added:
Enabling transparent and collaborative computational analysis of 12 tumor types within The Cancer Genome Atlas.|Omberg L,Ellrott K,Yuan Y,Kandoth C,Wong C,Kellen MR,Friend SH,Stuart J,Liang H,Margolin AA|Nat Genet|2013
Removed:
'contactORCID' has been modified:
Before:
After: https://orcid.org/0000-0001-8492-6705
'related_databases' has been modified:
Before:
Ensembl
UniProt Knowledgebase
Library of Integrated Network-Based Cellular Signatures Data Portal
Synapse
After:
Added:
Removed:
Ensembl
UniProt Knowledgebase
Library of Integrated Network-Based Cellular Signatures Data Portal
Synapse
'shortname' has been modified:
Before: MEP LINCS
After: Synapse
'taxonomies' has been modified:
Before:
Homo sapiens
After:
All
Added:
All
Removed:
Homo sapiens
'homepage' has been modified:
Before: https://www.synapse.org/#!Synapse:syn2862345/wiki/72486
After: https://www.synapse.org/
'description' has been modified:
Before: The MEP LINCS project contributes to the development
of the NIH Library of Integrated Network-based Cellular Signatures (LINCS) program by developing a dataset and computational strategy to elucidate how microenvironment (ME) signals affect cell intrinsic
intracellular transcriptional- and protein-defined molecular networks to generate experimentally observable cellular phenotypes measured by high-content imaging.
After: Synapse is a collaborative, open-source research platform that allows teams to share data, track analyses, and collaborate. It provides infrastructure and hosting for datasets.
Edits to 'https://fairsharing.org/FAIRsharing.dnxzmk' by 'The FAIRsharing Team' at 12:06, 10 Jan 2018 (approved):
'name' has been modified:
Before: Microenvironment Perturbagen (MEP) LINCS Center image server
After: Microenvironment Perturbagen LINCS Center image server