Genetic and Genomic Information System

Abbreviation:GnpIS

General Information

GnpIS is a multispecies integrative information system dedicated to plant and fungi pests. It bridges genetic and genomic data, allowing researchers access to both genetic information (e.g. genetic maps, quantitative trait loci, association genetics, markers, polymorphisms, germplasms, phenotypes and genotypes) and genomic data (e.g. genomic sequences, physical maps, genome annotation and expression data) for species of agronomical interest. GnpIS is used by both large international projects and plant science departments at the French National Institute for Agricultural Research. It is regularly improved and released several times per year. GnpIS is accessible through a web portal and allows to browse different types of data either independently through dedicated interfaces or simultaneously using a quick search ('google like search') or advanced search (Biomart, Galaxy, Intermine) tools.

Homepage https://urgi.versailles.inra.fr/gnpis

Countries that developed this resource France

Created in 2001

Taxonomic range

Agaricus subrefescens

Arabidopsis thaliana

Arabis alpina

Botrytis cinerea B0510

Microbotryum violaceum

Sclerotinia sclerotiorum

Solanum lycopersicum (ITAG 2.3)

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: GnpIS; Genetic and Genomic Information System; DOI: https://doi.org/10.25504/FAIRsharing.dw22y3; Last edited: Jan. 8, 2019, 1:22 p.m.; Last accessed: Oct 24 2020 6:59 a.m.

This record is maintained by cpommier ORCID and ThomasLetellier

Record added: March 2, 2016, 5:59 a.m.
Record updated: Nov. 21, 2018, 11:45 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.dw22y3' by 'The FAIRsharing Team' at 11:45, 21 Nov 2018 (not approved):

	'domains' has been modified:
		Before:
			DNA sequence data
			Gene expression data
			Genetic map
			Genome map
			Genotype
			Life Science
			Phenotype
		After:
			DNA sequence data
			Gene expression data
			Genetic map
			Genetic polymorphism
			Genome map
			Genotype
			Life Science
			Phenotype
		Added:
			Genetic polymorphism
		Removed:

	'miriam_id' has been modified:
		Before: 
		After: None

Edits to 'https://fairsharing.org/FAIRsharing.dw22y3' by 'ThomasLetellier' at 11:29, 07 May 2018 (approved):

	'related_databases' has been modified:
		Before:
			biodbcore-000297|Gramene|a comparative mapping resource for grains
			biodbcore-000829|GrainGenes|a Database for Triticeae and Avena
			biodbcore-000924|The Triticeae Toolbox 
		After:
		Added:
		Removed:
			biodbcore-000297|Gramene|a comparative mapping resource for grains
			biodbcore-000829|GrainGenes|a Database for Triticeae and Avena
			biodbcore-000924|The Triticeae Toolbox

Edits to 'https://fairsharing.org/FAIRsharing.dw22y3' by 'ThomasLetellier' at 11:28, 07 May 2018 (approved):

	'related_databases' has been modified:
		Before:
		After:
			biodbcore-000829|GrainGenes|a Database for Triticeae and Avena
			biodbcore-000297|Gramene|a comparative mapping resource for grains
			biodbcore-000924|The Triticeae Toolbox 
		Added:
			biodbcore-000829|GrainGenes|a Database for Triticeae and Avena
			biodbcore-000297|Gramene|a comparative mapping resource for grains
			biodbcore-000924|The Triticeae Toolbox 
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.dw22y3' by 'ThomasLetellier' at 14:31, 01 Feb 2018 (approved):

	'related_databases' has been modified:
		Before:
			biodbcore-000070|modMine
		After:
		Added:
		Removed:
			biodbcore-000070|modMine

Edits to 'https://fairsharing.org/FAIRsharing.dw22y3' by 'ThomasLetellier' at 14:06, 01 Feb 2018 (approved):

	'miriam_url' has been modified:
		Before: None
		After:

Edits to 'https://fairsharing.org/FAIRsharing.dw22y3' by 'The FAIRsharing Team' at 14:14, 23 Sep 2016 (approved):

	'name' has been modified:
		Before: GnpIS
		After: Genetic and Genomic Information System

In Collections

EOSC-Life

Wheat Data Interoperability Guidelines

RDA Covid-19 WG Resources

Support

General

support email

urgi-support@versailles.inra.fr

Additional Information

Contact

URGI Contact ORCID

Tools

No tools defined

Access / Retrieve Data

Conditions of Use

Data Access

https://urgi.versailles.inra.fr/gnpis/

REST Web Services

Several entry points to get access to genomic, genetic and phenotypic data

https://urgi.versailles.inra.fr/Tools/Web-services

Publications

GnpIS: an information system to integrate genetic and genomic data from plants and fungi

Delphine Steinbach, Michael Alaux, Joelle Amselem, Nathalie Choisne, Sophie Durand, Raphaël Flores, Aminah-Olivia Keliet, Erik Kimmel, Nicolas Lapalu, Isabelle Luyten, Célia Michotey, Nacer Mohellibi, Cyril Pommier, Sébastien Reboux, Dorothée Valdenaire, Daphné Verdelet and Hadi Quesneville*
Database 2013

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

Minimum Information about Plant Phenotyping Experiment

Terminology Artifacts

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by cpommier ORCID and ThomasLetellier

Funds

European Union (EU) (Government body)
Institut national de la recherche agronomique (INRA), Paris, France (Research institute)
National Agency of Research (ANR), Paris, France (Government body)

Maintains

ELIXIR-Hub, UK (Government body)
URGI
transplant

Grant Number(s)

283496 (European Union (EU))

Genetic and Genomic Information System

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