iReceptor Public Archive

Abbreviation:IPA

General Information

A data repository for the storage and sharing of Adaptive Immune Receptor Repertoire data. Primary public repository for the iReceptor Platform and Scientific Gateway.

Homepage http://www.ireceptor.org

Countries that developed this resource Canada

Created in 2014

Taxonomic range

All

Knowledge Domains

Subjects

User-defined Tags

COVID-19

How to cite this record FAIRsharing.org: IPA; iReceptor Public Archive; DOI: https://doi.org/10.25504/FAIRsharing.ekdqe5; Last edited: Oct. 22, 2020, 10:01 a.m.; Last accessed: Jan 20 2021 6:59 a.m.

This record is maintained by bcorrie ORCID

Record added: Sept. 7, 2017, 4:53 a.m.
Record updated: Oct. 21, 2020, 5:35 p.m. by bcorrie.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.ekdqe5' by 'bcorrie' at 17:35, 21 Oct 2020 (approved):

	'accessPoints' has been modified:
		Before:
			REST|https://ipa1.ireceptor.org/|IPA1 - First node in the iReceptor Public Archive (IPA) cluster
			REST|https://ipa2.ireceptor.org/|IPA2 - Second node in the iReceptor Public Archive (IPA) cluster
			REST|https://ipa3.ireceptor.org/|IPA3 - Third node in the iReceptor Public Archive (IPA) cluster
			REST|https://ipa4.ireceptor.org/|IPA4 - Fourth node in the iReceptor Public Archive (IPA) cluster
			REST|http://ipa5.ireceptor.org/|IPA5 - Fifth node in the iReceptor Public Archive (IPA) cluster
			REST|http://covid19-1.ireceptor.org|COVID19-1 - First AIRR COVID-19 repository
			REST|http://covid19-2.ireceptor.org|COVID19-2 - Second AIRR COVID-19 repository
		After:
			REST|https://ipa1.ireceptor.org/|IPA1 - First node in the iReceptor Public Archive (IPA) cluster
			REST|https://ipa2.ireceptor.org/|IPA2 - Second node in the iReceptor Public Archive (IPA) cluster
			REST|https://ipa3.ireceptor.org/|IPA3 - Third node in the iReceptor Public Archive (IPA) cluster
			REST|https://ipa4.ireceptor.org/|IPA4 - Fourth node in the iReceptor Public Archive (IPA) cluster
			REST|http://ipa5.ireceptor.org/|IPA5 - Fifth node in the iReceptor Public Archive (IPA) cluster
			REST|http://covid19-1.ireceptor.org|COVID19-1 - First AIRR COVID-19 repository
			REST|http://covid19-2.ireceptor.org|COVID19-2 - Second AIRR COVID-19 repository
			REST|http://covid19-3.ireceptor.org/|COVID19-3 - Third AIRR COVID-19 repository
			REST|http://covid19-4.ireceptor.org/|COVID19-4 - Fourth AIRR COVID-19 repository
		Added:
			REST|http://covid19-3.ireceptor.org/|COVID19-3 - Third AIRR COVID-19 repository
			REST|http://covid19-4.ireceptor.org/|COVID19-4 - Fourth AIRR COVID-19 repository
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.ekdqe5' by 'bcorrie' at 19:07, 07 Aug 2020 (approved):

	'accessPoints' has been modified:
		Before:
			REST|https://ipa1.ireceptor.org/v2/samples|IPA1 - First node in the iReceptor Public Archive (IPA) cluster
			REST|https://ipa2.ireceptor.org/v2/samples|IPA2 - Second node in the iReceptor Public Archive (IPA) cluster
			REST|https://ipa3.ireceptor.org/v2/samples|IPA3 - Third node in the iReceptor Public Archive (IPA) cluster
			REST|https://ipa4.ireceptor.org/v2/samples|IPA4 - Fourth node in the iReceptor Public Archive (IPA) cluster
			REST|http://ipa5.ireceptor.org/v2/samples|IPA5 - Fifth node in the iReceptor Public Archive (IPA) cluster
		After:
			REST|https://ipa1.ireceptor.org/|IPA1 - First node in the iReceptor Public Archive (IPA) cluster
			REST|https://ipa2.ireceptor.org/|IPA2 - Second node in the iReceptor Public Archive (IPA) cluster
			REST|https://ipa3.ireceptor.org/|IPA3 - Third node in the iReceptor Public Archive (IPA) cluster
			REST|https://ipa4.ireceptor.org/|IPA4 - Fourth node in the iReceptor Public Archive (IPA) cluster
			REST|http://ipa5.ireceptor.org/|IPA5 - Fifth node in the iReceptor Public Archive (IPA) cluster
			REST|http://covid19-1.ireceptor.org|COVID19-1 - First AIRR COVID-19 repository
			REST|http://covid19-2.ireceptor.org|COVID19-2 - Second AIRR COVID-19 repository
		Added:
			REST|https://ipa1.ireceptor.org/|IPA1 - First node in the iReceptor Public Archive (IPA) cluster
			REST|https://ipa2.ireceptor.org/|IPA2 - Second node in the iReceptor Public Archive (IPA) cluster
			REST|https://ipa3.ireceptor.org/|IPA3 - Third node in the iReceptor Public Archive (IPA) cluster
			REST|https://ipa4.ireceptor.org/|IPA4 - Fourth node in the iReceptor Public Archive (IPA) cluster
			REST|http://ipa5.ireceptor.org/|IPA5 - Fifth node in the iReceptor Public Archive (IPA) cluster
			REST|http://covid19-1.ireceptor.org|COVID19-1 - First AIRR COVID-19 repository
			REST|http://covid19-2.ireceptor.org|COVID19-2 - Second AIRR COVID-19 repository
		Removed:
			REST|https://ipa1.ireceptor.org/v2/samples|IPA1 - First node in the iReceptor Public Archive (IPA) cluster
			REST|https://ipa2.ireceptor.org/v2/samples|IPA2 - Second node in the iReceptor Public Archive (IPA) cluster
			REST|https://ipa3.ireceptor.org/v2/samples|IPA3 - Third node in the iReceptor Public Archive (IPA) cluster
			REST|https://ipa4.ireceptor.org/v2/samples|IPA4 - Fourth node in the iReceptor Public Archive (IPA) cluster
			REST|http://ipa5.ireceptor.org/v2/samples|IPA5 - Fifth node in the iReceptor Public Archive (IPA) cluster

Edits to 'https://fairsharing.org/FAIRsharing.ekdqe5' by 'The FAIRsharing Team' at 11:15, 15 Apr 2020 (approved):

	'user_defined_tags' has been modified:
		Before:
		After:
			COVID-19
		Added:
			COVID-19
		Removed:

	'onto_disciplines' has been modified:
		Before:
			Immunogenetics
			Immunology
			Life Science
		After:
			Epidemiology
			Immunogenetics
			Immunology
			Life Science
			Virology
		Added:
			Epidemiology
			Virology
		Removed:

	'supportLinks' has been modified:
		Before:
			email|support@ireceptor.org
			online documentation|http://www.ireceptor.org/platform/doc
			online documentation|http://ireceptor.irmacs.sfu.ca/curation
			online documentation|http://ireceptor.irmacs.sfu.ca/about
			online documentation|http://ireceptor.irmacs.sfu.ca/news
		After:
			blog|http://ireceptor.irmacs.sfu.ca/news
			email|support@ireceptor.org
			online documentation|http://www.ireceptor.org/platform/doc
			online documentation|http://ireceptor.irmacs.sfu.ca/curation
			online documentation|http://ireceptor.irmacs.sfu.ca/about
		Added:
			blog|http://ireceptor.irmacs.sfu.ca/news
		Removed:
			online documentation|http://ireceptor.irmacs.sfu.ca/news

	'onto_domains' has been modified:
		Before:
			B cell receptor complex
			Receptor
			T cell receptor complex
			immunoglobulin complex, circulating
		After:
			B cell receptor complex
			Receptor
			T cell receptor complex
			curated information
			immunoglobulin complex, circulating
			literature curation
		Added:
			curated information
			literature curation
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.ekdqe5' by 'The FAIRsharing Team' at 09:22, 06 Feb 2020 (approved):

	'taxonomies' has been modified:
		Before:
		After:
			All
		Added:
			All
		Removed:

	'supportLinks' has been modified:
		Before:
			online documentation|http://www.ireceptor.org/platform/doc
		After:
			email|support@ireceptor.org
			online documentation|http://www.ireceptor.org/platform/doc
			online documentation|http://ireceptor.irmacs.sfu.ca/curation
			online documentation|http://ireceptor.irmacs.sfu.ca/about
			online documentation|http://ireceptor.irmacs.sfu.ca/news
		Added:
			email|support@ireceptor.org
			online documentation|http://ireceptor.irmacs.sfu.ca/curation
			online documentation|http://ireceptor.irmacs.sfu.ca/about
			online documentation|http://ireceptor.irmacs.sfu.ca/news
		Removed:

	'onto_domains' has been modified:
		Before:
			B cell receptor complex
			T cell receptor complex
		After:
			B cell receptor complex
			Receptor
			T cell receptor complex
			immunoglobulin complex, circulating
		Added:
			Receptor
			immunoglobulin complex, circulating
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.ekdqe5' by 'bcorrie' at 20:01, 05 Feb 2020 (approved):

	'accessPoints' has been modified:
		Before:
		After:
			REST|https://ipa1.ireceptor.org/v2/samples|IPA1 - First node in the iReceptor Public Archive (IPA) cluster
			REST|https://ipa2.ireceptor.org/v2/samples|IPA2 - Second node in the iReceptor Public Archive (IPA) cluster
			REST|https://ipa3.ireceptor.org/v2/samples|IPA3 - Third node in the iReceptor Public Archive (IPA) cluster
			REST|https://ipa4.ireceptor.org/v2/samples|IPA4 - Fourth node in the iReceptor Public Archive (IPA) cluster
			REST|http://ipa5.ireceptor.org/v2/samples|IPA5 - Fifth node in the iReceptor Public Archive (IPA) cluster
		Added:
			REST|https://ipa1.ireceptor.org/v2/samples|IPA1 - First node in the iReceptor Public Archive (IPA) cluster
			REST|https://ipa2.ireceptor.org/v2/samples|IPA2 - Second node in the iReceptor Public Archive (IPA) cluster
			REST|https://ipa3.ireceptor.org/v2/samples|IPA3 - Third node in the iReceptor Public Archive (IPA) cluster
			REST|https://ipa4.ireceptor.org/v2/samples|IPA4 - Fourth node in the iReceptor Public Archive (IPA) cluster
			REST|http://ipa5.ireceptor.org/v2/samples|IPA5 - Fifth node in the iReceptor Public Archive (IPA) cluster
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.ekdqe5' by 'bcorrie' at 19:39, 05 Feb 2020 (approved):

	'publications' has been modified:
		Before:
			iReceptor: A platform for querying and analyzing antibody/Bcell and Tcell receptor repertoire data across federated repositories|Brian D. Corrie,  Nishanth Marthandan,  Bojan Zimonja,  Jerome Jaglale,  Yang Zhou,  Emily Barr,  Nicole Knoetze,  Frances M. W. Breden,  Scott Christley,  Jamie K. Scott,  Lindsay G. Cowell,  Felix Breden|Immunological Reviews|
		After:
			iReceptor: A platform for querying and analyzing antibody/Bcell and Tcell receptor repertoire data across federated repositories|Brian D. Corrie,  Nishanth Marthandan,  Bojan Zimonja,  Jerome Jaglale,  Yang Zhou,  Emily Barr,  Nicole Knoetze,  Frances M. W. Breden,  Scott Christley,  Jamie K. Scott,  Lindsay G. Cowell,  Felix Breden|Immunological Reviews|2018
		Added:
			iReceptor: A platform for querying and analyzing antibody/Bcell and Tcell receptor repertoire data across federated repositories|Brian D. Corrie,  Nishanth Marthandan,  Bojan Zimonja,  Jerome Jaglale,  Yang Zhou,  Emily Barr,  Nicole Knoetze,  Frances M. W. Breden,  Scott Christley,  Jamie K. Scott,  Lindsay G. Cowell,  Felix Breden|Immunological Reviews|2018
		Removed:
			iReceptor: A platform for querying and analyzing antibody/Bcell and Tcell receptor repertoire data across federated repositories|Brian D. Corrie,  Nishanth Marthandan,  Bojan Zimonja,  Jerome Jaglale,  Yang Zhou,  Emily Barr,  Nicole Knoetze,  Frances M. W. Breden,  Scott Christley,  Jamie K. Scott,  Lindsay G. Cowell,  Felix Breden|Immunological Reviews|

Edits to 'https://fairsharing.org/FAIRsharing.ekdqe5' by 'The FAIRsharing Team' at 16:17, 19 Aug 2019 (approved):

	'status' has been modified:
		Before: DEV
		After: RDY

Edits to 'https://fairsharing.org/FAIRsharing.ekdqe5' by 'bcorrie' at 19:07, 14 Aug 2019 (approved):

	'organizations' has been modified:
		Before:
			Canada Foundation for Innovation|https://www.innovation.ca/|Funds
			CANARIE Network Enabled Platforms Program|https://www.canarie.ca|Funds
			British Columbia Knowledge Development Fund (BCKDF)|http://www2.gov.bc.ca/gov/content/governments/about-the-bc-government/technology-innovation/bckdf|Funds
			iReceptor, Simon Fraser University, Vancouver, B.C., Canada|http://www.sfu.ca|Maintains
		After:
			Canada Foundation for Innovation|https://www.innovation.ca/|Funds
			CANARIE Network Enabled Platforms Program|https://www.canarie.ca|Funds
			British Columbia Knowledge Development Fund (BCKDF)|http://www2.gov.bc.ca/gov/content/governments/about-the-bc-government/technology-innovation/bckdf|Funds
			iReceptor, Simon Fraser University, Vancouver, B.C., Canada|http://www.sfu.ca|Maintains
			Canadian Institutes of Health Research (CIHR)|http://www.cihr-irsc.gc.ca/e/193.html|Funds
			European Commission Horizon2020 Programme|https://ec.europa.eu/programmes/horizon2020/|Funds
		Added:
			Canadian Institutes of Health Research (CIHR)|http://www.cihr-irsc.gc.ca/e/193.html|Funds
			European Commission Horizon2020 Programme|https://ec.europa.eu/programmes/horizon2020/|Funds
		Removed:

	'supportLinks' has been modified:
		Before:
			online documentation|http://ireceptor.irmacs.sfu.ca/platform/doc
		After:
			online documentation|http://www.ireceptor.org/platform/doc
		Added:
			online documentation|http://www.ireceptor.org/platform/doc
		Removed:
			online documentation|http://ireceptor.irmacs.sfu.ca/platform/doc

	'tools' has been modified:
		Before:
			DB Service API Documentation||http://ireceptor.irmacs.sfu.ca/platform/doc
		After:
			DB Service API Documentation||http://www.ireceptor.org/platform/doc
		Added:
			DB Service API Documentation||http://www.ireceptor.org/platform/doc
		Removed:
			DB Service API Documentation||http://ireceptor.irmacs.sfu.ca/platform/doc

	'contactEmail' has been modified:
		Before: bcorrie@sfu.ca
		After: bdcorrie@gmail.com

	'miriam_id' has been modified:
		Before: None
		After: 

	'publications' has been modified:
		Before:
		After:
			iReceptor: A platform for querying and analyzing antibody/Bcell and Tcell receptor repertoire data across federated repositories|Brian D. Corrie,  Nishanth Marthandan,  Bojan Zimonja,  Jerome Jaglale,  Yang Zhou,  Emily Barr,  Nicole Knoetze,  Frances M. W. Breden,  Scott Christley,  Jamie K. Scott,  Lindsay G. Cowell,  Felix Breden|Immunological Reviews|
		Added:
			iReceptor: A platform for querying and analyzing antibody/Bcell and Tcell receptor repertoire data across federated repositories|Brian D. Corrie,  Nishanth Marthandan,  Bojan Zimonja,  Jerome Jaglale,  Yang Zhou,  Emily Barr,  Nicole Knoetze,  Frances M. W. Breden,  Scott Christley,  Jamie K. Scott,  Lindsay G. Cowell,  Felix Breden|Immunological Reviews|
		Removed:

	'homepage' has been modified:
		Before: http://ireceptor.org
		After: http://www.ireceptor.org

Edits to 'https://fairsharing.org/FAIRsharing.ekdqe5' by 'The FAIRsharing Team' at 14:47, 17 Oct 2017 (approved):

	'supportLinks' has been modified:
		Before:
		After:
			http://ireceptor.irmacs.sfu.ca/platform/doc
		Added:
			http://ireceptor.irmacs.sfu.ca/platform/doc
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.ekdqe5' by 'The FAIRsharing Team' at 19:58, 07 Sep 2017 (approved):

	'year' has been modified:
		Before: 2017
		After: 2014

Edits to 'https://fairsharing.org/FAIRsharing.ekdqe5' by 'The FAIRsharing Team' at 19:57, 07 Sep 2017 (approved):

	'tools' has been modified:
		Before:
		After:
			DB Service API Documentation
		Added:
			DB Service API Documentation
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.ekdqe5' by 'bcorrie' at 05:05, 07 Sep 2017 (approved):

	'domains' has been modified:
		Before:
			Immunogenetics|None|http://purl.obolibrary.org/obo/OMIT_0008256
			Immunology|process|http://edamontology.org/topic_0804
		After:
			Immunogenetics|None|http://purl.obolibrary.org/obo/OMIT_0008256
			Immunology|process|http://edamontology.org/topic_0804
			T cell receptor complex|None|http://purl.obolibrary.org/obo/GO_0042101
			B cell receptor complex|None|http://purl.obolibrary.org/obo/GO_0019815
			Life Science|domain|
		Added:
			T cell receptor complex|None|http://purl.obolibrary.org/obo/GO_0042101
			B cell receptor complex|None|http://purl.obolibrary.org/obo/GO_0019815
			Life Science|domain|
		Removed:

In Collections

AIRR Data Commons

COVID-19 Resources

RDA Covid-19 WG Resources

Support

General

blog	News
support email	iReceptor Helpdesk
online documentation	iReceptor Documentation
online documentation	Curation at iReceptor
online documentation	About iReceptor

Additional Information

Contact

Brian Corrie ORCID

Tools

DB Service API Documentation

http://www.ireceptor.org/platform/doc

Access / Retrieve Data

Conditions of Use

Applies to: Data use

BSD-3-Clause License (Modified BSD License) (New BSD License)

Data Access

Registration Required

http://gateway.ireceptor.org

REST Web Services

IPA1 - First node in the iReceptor Public Archive (IPA) cluster	https://ipa1.ireceptor.org/
IPA2 - Second node in the iReceptor Public Archive (IPA) cluster	https://ipa2.ireceptor.org/
IPA3 - Third node in the iReceptor Public Archive (IPA) cluster	https://ipa3.ireceptor.org/
IPA4 - Fourth node in the iReceptor Public Archive (IPA) cluster	https://ipa4.ireceptor.org/
IPA5 - Fifth node in the iReceptor Public Archive (IPA) cluster	http://ipa5.ireceptor.org/
COVID19-1 - First AIRR COVID-19 repository	http://covid19-1.ireceptor.org
COVID19-2 - Second AIRR COVID-19 repository	http://covid19-2.ireceptor.org
COVID19-3 - Third AIRR COVID-19 repository	http://covid19-3.ireceptor.org/
COVID19-4 - Fourth AIRR COVID-19 repository	http://covid19-4.ireceptor.org/

Publications

iReceptor: A platform for querying and analyzing antibody/B‐cell and T‐cell receptor repertoire data across federated repositories

Brian D. Corrie, Nishanth Marthandan, Bojan Zimonja, Jerome Jaglale, Yang Zhou, Emily Barr, Nicole Knoetze, Frances M. W. Breden, Scott Christley, Jamie K. Scott, Lindsay G. Cowell, Felix Breden
Immunological Reviews 2018

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

Minimal information about Adaptive Immune Receptor Repertoire

Terminology Artifacts

No semantic standards defined

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by bcorrie ORCID

Funds

Canada Foundation for Innovation (Government body)
CANARIE Network Enabled Platforms Program (Company)
British Columbia Knowledge Development Fund (BCKDF) (Government body)
Canadian Institutes of Health Research (CIHR) (Government body)
European Commission Horizon2020 Programme (Government body)

Maintains

iReceptor, Simon Fraser University, Vancouver, B.C., Canada (University)

iReceptor Public Archive

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