databases > DOI:10.25504/FAIRsharing.f5zx00
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ready Expression Atlas

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General Information
The Expression Atlas is a free resource providing information on gene expression patterns under different biological conditions in a variety of species. Gene expression data is re-analysed in-house to detect genes showing interesting baseline and differential expression patterns, allowing a user to ask questions such as "what are the genes expressed in normal human liver" and "what genes are differentially expressed between water-stressed rice plants and controls with normal watering?" The resource features proteomics data sets provided by collaborators for corroboration between gene- and protein-level expression results. The latest component, Single Cell Expression Atlas, systematically reanalyses and visualises single cell RNA-sequencing datasets and helps answer questions such as what cell population a gene can act as a marker gene.


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How to cite this record FAIRsharing.org: Expression Atlas; Expression Atlas; DOI: https://doi.org/10.25504/FAIRsharing.f5zx00; Last edited: Feb. 23, 2021, 3:51 p.m.; Last accessed: Sep 25 2021 1:40 p.m.

Publication for citation  Expression Atlas update: from tissues to single cells Irene Papatheodorou, Pablo Moreno, Jonathan Manning, Alfonso Muñoz-Pomer Fuentes, Nancy George, Silvie Fexova et al.,; Nucleic Acids Research ; 2019; 0.1093/nar/gkz947;


This record is maintained by arrayexpress1

Record updated: Feb. 23, 2021, 10:07 a.m. by The FAIRsharing Team.

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Applies to: Data use Applies to: Database software

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REST Web Services



Publications

Gene expression atlas at the European bioinformatics institute.

Kapushesky M., Emam I., Holloway E., Kurnosov P., Zorin A., Malone J., Rustici G., Williams E., Parkinson H., Brazma A.,
Nucleic Acids Res. 2010

View Paper (PubMed)

Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments.

Petryszak R, Burdett T, Fiorelli B, Fonseca NA, Gonzalez-Porta M, Hastings E, Huber W, Jupp S, Keays M, Kryvych N, McMurry J, Marioni JC, Malone J, Megy K, Rustici G, Tang AY, Taubert J, Williams E, Mannion O, Parkinson HE, Brazma A.
Nucleic Acids Res. 2014

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Expression Atlas update--an integrated database of gene and protein expression in humans, animals and plants.

Petryszak R,Keays M,Tang YA,Fonseca NA,Barrera E,Burdett T,Fullgrabe A,Fuentes AM,Jupp S,Koskinen S,Mannion O,Huerta L,Megy K,Snow C,Williams E,Barzine M,Hastings E,Weisser H,Wright J,Jaiswal P,Huber W,Choudhary J,Parkinson HE,Brazma A
Nucleic Acids Res 2015

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Expression Atlas: gene and protein expression across multiple studies and organisms.

Papatheodorou I,Fonseca NA,Keays M,Tang YA,Barrera E,Bazant W,Burke M,Fullgrabe A,Fuentes AM,George N,Huerta L,Koskinen S,Mohammed S,Geniza M,Preece J,Jaiswal P,Jarnuczak AF,Huber W,Stegle O,Vizcaino JA,Brazma A,Petryszak R
Nucleic Acids Res 2017

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Expression Atlas update: from tissues to single cells

Irene Papatheodorou, Pablo Moreno, Jonathan Manning, Alfonso Muñoz-Pomer Fuentes, Nancy George, Silvie Fexova et al.,
Nucleic Acids Research 2019

View Paper (PubMed) View Publication