Edits to 'https://fairsharing.org/FAIRsharing.f94905' by 'The FAIRsharing Team' at 16:22, 01 Mar 2021 (approved):
'grants' has been modified:
Before:
212929
218288
HHSN75N93019C00077
After:
212929/Z/18/Z
218288/Z/19/Z
HHSN75N93019C00077
Added:
212929/Z/18/Z
218288/Z/19/Z
Removed:
212929
218288
Edits to 'https://fairsharing.org/FAIRsharing.f94905' by 'The FAIRsharing Team' at 10:55, 01 Mar 2021 (approved):
'publications' has been modified:
Before:
EuPathDB: a portal to eukaryotic pathogen databases.|Aurrecoechea C., Brestelli J., Brunk BP. et al.|Nucleic Acids Res.|2010
ApiDB: integrated resources for the apicomplexan bioinformatics resource center.|Aurrecoechea C, Heiges M, Wang H, Wang Z, Fischer S, Rhodes P, Miller J, Kraemer E, Stoeckert CJ Jr, Roos DS, Kissinger JC.|Nucleic Acids Res.|2007
Standardized metadata for human pathogen/vector genomic sequences.|Dugan VG,Emrich SJ,Giraldo-Calderon GI et al.|PLoS One|2014
The Eukaryotic Pathogen Databases: a functional genomic resource integrating data from human and veterinary parasites.|Harb OS,Roos DS|Methods Mol Biol|2014
SchistoDB: an updated genome resource for the three key schistosomes of humans.|Zerlotini A,Aguiar ER,Yu F,Xu H,Li Y,Young ND,Gasser RB,Protasio AV,Berriman M,Roos DS,Kissinger JC,Oliveira G|Nucleic Acids Res|2012
EuPathDB: The Eukaryotic Pathogen Genomics Database Resource.|Warrenfeltz S,Basenko EY,Crouch K,Harb OS,Kissinger JC,Roos DS,Shanmugasundram A,Silva-Franco F|Methods Mol Biol|2018
After:
EuPathDB: a portal to eukaryotic pathogen databases.|Aurrecoechea C., Brestelli J., Brunk BP. et al.|Nucleic Acids Res.|2010
Standardized metadata for human pathogen/vector genomic sequences.|Dugan VG,Emrich SJ,Giraldo-Calderon GI et al.|PLoS One|2014
The Eukaryotic Pathogen Databases: a functional genomic resource integrating data from human and veterinary parasites.|Harb OS,Roos DS|Methods Mol Biol|2014
EuPathDB: The Eukaryotic Pathogen Genomics Database Resource.|Warrenfeltz S,Basenko EY,Crouch K,Harb OS,Kissinger JC,Roos DS,Shanmugasundram A,Silva-Franco F|Methods Mol Biol|2018
Added:
Removed:
ApiDB: integrated resources for the apicomplexan bioinformatics resource center.|Aurrecoechea C, Heiges M, Wang H, Wang Z, Fischer S, Rhodes P, Miller J, Kraemer E, Stoeckert CJ Jr, Roos DS, Kissinger JC.|Nucleic Acids Res.|2007
SchistoDB: an updated genome resource for the three key schistosomes of humans.|Zerlotini A,Aguiar ER,Yu F,Xu H,Li Y,Young ND,Gasser RB,Protasio AV,Berriman M,Roos DS,Kissinger JC,Oliveira G|Nucleic Acids Res|2012
Edits to 'https://fairsharing.org/FAIRsharing.f94905' by 'The FAIRsharing Team' at 10:42, 01 Mar 2021 (approved):
'organizations' has been modified:
Before:
Bill and Melinda Gates Foundation, Seattle, Washington, USA|http://www.gatesfoundation.org|Funds
National Institute of Allergy and Infectious Diseases (NIAD), Bethesda, MD, USA|http://www.niaid.nih.gov/|Funds
Institute of Integrative Biology, University of Liverpool, Liverpool, UK|https://www.liverpool.ac.uk/integrative-biology/|Maintains
The Wellcome Trust Centre for Molecular Parasitology|http://www.gla.ac.uk/researchinstitutes/iii/wtcmp/|Maintains
The Wellcome Trust Sanger Institute, The Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK|http://www.sanger.ac.uk|Maintains
Bioinformatics Resource Centers, National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD, USA|https://www.niaid.nih.gov/research/bioinformatics-resource-centers|Maintains
After:
Bill and Melinda Gates Foundation, Seattle, Washington, USA|http://www.gatesfoundation.org|Funds
The Wellcome Trust, UK|https://wellcome.ac.uk/|Funds
National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD, USA|https://www.niaid.nih.gov/|Funds
Bioinformatics Resource Centers, National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD, USA|https://www.niaid.nih.gov/research/bioinformatics-resource-centers|Maintains
Added:
The Wellcome Trust, UK|https://wellcome.ac.uk/|Funds
National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD, USA|https://www.niaid.nih.gov/|Funds
Removed:
National Institute of Allergy and Infectious Diseases (NIAD), Bethesda, MD, USA|http://www.niaid.nih.gov/|Funds
Institute of Integrative Biology, University of Liverpool, Liverpool, UK|https://www.liverpool.ac.uk/integrative-biology/|Maintains
The Wellcome Trust Centre for Molecular Parasitology|http://www.gla.ac.uk/researchinstitutes/iii/wtcmp/|Maintains
The Wellcome Trust Sanger Institute, The Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK|http://www.sanger.ac.uk|Maintains
'related_databases' has been modified:
Before:
Fungal and Oomycete genomics resource
Cryptosporidum Genomics Resource
GiardiaDB
MicrosporidiaDB
PlasmoDB
Toxoplasma Genomics Resource
TrichDB
TriTrypDB
AmoebaDB
ClinEpiDB
After:
Fungal and Oomycete genomics resource
Cryptosporidum Genomics Resource
GiardiaDB
MicrosporidiaDB
PlasmoDB
Toxoplasma Genomics Resource
TrichDB
TriTrypDB
AmoebaDB
VectorBase
ClinEpiDB
Added:
VectorBase
Removed:
'supportLinks' has been modified:
Before:
contact form|https://eupathdb.org/eupathdb/app/contact-us
help|https://tritrypdb.org/tritrypdb/app/static-content/landing.html
online documentation|https://eupathdb.org/eupathdb/showXmlDataContent.do?name=XmlQuestions.About
twitter|@eupathdb
After:
contact form|https://veupathdb.org/veupathdb/app/contact-us
help|https://veupathdb.org/veupathdb/app/static-content/landing.html
help|https://veupathdb.org/veupathdb/app/static-content/glossary.html
help|https://static-content.veupathdb.org/documents/VEuPathDB_User_Documentation.pdf
online documentation|https://veupathdb.org/veupathdb/app/search/organism/GenomeDataTypes/result
online documentation|https://veupathdb.org/veupathdb/app/static-content/about.html
online documentation|https://veupathdb.org/pubcrawler/EuPathDB/
online documentation|https://veupathdb.org/veupathdb/app/static-content/methods.html
twitter|@VEuPathDB
Added:
contact form|https://veupathdb.org/veupathdb/app/contact-us
help|https://veupathdb.org/veupathdb/app/static-content/landing.html
help|https://veupathdb.org/veupathdb/app/static-content/glossary.html
help|https://static-content.veupathdb.org/documents/VEuPathDB_User_Documentation.pdf
online documentation|https://veupathdb.org/veupathdb/app/search/organism/GenomeDataTypes/result
online documentation|https://veupathdb.org/veupathdb/app/static-content/about.html
online documentation|https://veupathdb.org/pubcrawler/EuPathDB/
online documentation|https://veupathdb.org/veupathdb/app/static-content/methods.html
twitter|@VEuPathDB
Removed:
contact form|https://eupathdb.org/eupathdb/app/contact-us
help|https://tritrypdb.org/tritrypdb/app/static-content/landing.html
online documentation|https://eupathdb.org/eupathdb/showXmlDataContent.do?name=XmlQuestions.About
twitter|@eupathdb
'name' has been modified:
Before: Eukaryotic Pathogen Database Resources
After: Eukaryotic Pathogen, Vector and Host Informatics Resource
'licences' has been modified:
Before:
After:
VEuPathDB Data Submission and Release Policies|https://static-content.veupathdb.org/documents/VEuPathDB_Data_Sub_Release_policy_rev_02April2020.pdf|Data
Added:
VEuPathDB Data Submission and Release Policies|https://static-content.veupathdb.org/documents/VEuPathDB_Data_Sub_Release_policy_rev_02April2020.pdf|Data
Removed:
'tools' has been modified:
Before:
BLAST||http://eupathdb.org/eupathdb/showQuestion.do?questionFullName=UniversalQuestions.UnifiedBlast
After:
Added:
Removed:
BLAST||http://eupathdb.org/eupathdb/showQuestion.do?questionFullName=UniversalQuestions.UnifiedBlast
'onto_disciplines' has been modified:
Before:
Biomedical Science
Life Science
After:
Comparative Genomics
Genomics
Population Genetics
Added:
Comparative Genomics
Genomics
Population Genetics
Removed:
Biomedical Science
Life Science
'onto_domains' has been modified:
Before:
genome
orthologous
pathogen
After:
genome
orthologous
pathogen
phenotype
Added:
phenotype
Removed:
'grants' has been modified:
Before:
After:
212929
218288
HHSN75N93019C00077
Added:
212929
218288
HHSN75N93019C00077
Removed:
'publications' has been modified:
Before:
EuPathDB: a portal to eukaryotic pathogen databases.|Aurrecoechea C., Brestelli J., Brunk BP., Fischer S., Gajria B., Gao X., Gingle A., Grant G., Harb OS., Heiges M., Innamorato F., Iodice J., Kissinger JC., Kraemer ET., Li W., Miller JA., Nayak V., Pennington C., Pinney DF., Roos DS., Ross C., Srinivasamoorthy G., Stoeckert CJ., Thibodeau R., Treatman C., Wang H., |Nucleic Acids Res.|2010
ApiDB: integrated resources for the apicomplexan bioinformatics resource center.|Aurrecoechea C, Heiges M, Wang H, Wang Z, Fischer S, Rhodes P, Miller J, Kraemer E, Stoeckert CJ Jr, Roos DS, Kissinger JC.|Nucleic Acids Res.|2007
Standardized metadata for human pathogen/vector genomic sequences.|Dugan VG,Emrich SJ,Giraldo-Calderon GI,Harb OS,Newman RM,Pickett BE,Schriml LM,Stockwell TB,Stoeckert CJ Jr,Sullivan DE,Singh I,Ward DV,Yao A,Zheng J,Barrett T,Birren B,Brinkac L,Bruno VM,Caler E,Chapman S,Collins FH,Cuomo CA,Di Francesco V,Durkin S,Eppinger M,Feldgarden M,Fraser C,Fricke WF,Giovanni M,Henn MR,Hine E,Hotopp JD,Karsch-Mizrachi I,Kissinger JC,Lee EM,Mathur P,Mongodin EF,Murphy CI,Myers G,Neafsey DE,Nelson KE,Nierman WC,Puzak J,Rasko D,Roos DS,Sadzewicz L,Silva JC,Sobral B,Squires RB,Stevens RL,Tallon L,Tettelin H,Wentworth D,White O,Will R,Wortman J,Zhang Y,Scheuermann RH|PLoS One|2014
The Eukaryotic Pathogen Databases: a functional genomic resource integrating data from human and veterinary parasites.|Harb OS,Roos DS|Methods Mol Biol|2014
SchistoDB: an updated genome resource for the three key schistosomes of humans.|Zerlotini A,Aguiar ER,Yu F,Xu H,Li Y,Young ND,Gasser RB,Protasio AV,Berriman M,Roos DS,Kissinger JC,Oliveira G|Nucleic Acids Res|2012
After:
EuPathDB: a portal to eukaryotic pathogen databases.|Aurrecoechea C., Brestelli J., Brunk BP. et al.|Nucleic Acids Res.|2010
ApiDB: integrated resources for the apicomplexan bioinformatics resource center.|Aurrecoechea C, Heiges M, Wang H, Wang Z, Fischer S, Rhodes P, Miller J, Kraemer E, Stoeckert CJ Jr, Roos DS, Kissinger JC.|Nucleic Acids Res.|2007
Standardized metadata for human pathogen/vector genomic sequences.|Dugan VG,Emrich SJ,Giraldo-Calderon GI et al.|PLoS One|2014
The Eukaryotic Pathogen Databases: a functional genomic resource integrating data from human and veterinary parasites.|Harb OS,Roos DS|Methods Mol Biol|2014
SchistoDB: an updated genome resource for the three key schistosomes of humans.|Zerlotini A,Aguiar ER,Yu F,Xu H,Li Y,Young ND,Gasser RB,Protasio AV,Berriman M,Roos DS,Kissinger JC,Oliveira G|Nucleic Acids Res|2012
EuPathDB: The Eukaryotic Pathogen Genomics Database Resource.|Warrenfeltz S,Basenko EY,Crouch K,Harb OS,Kissinger JC,Roos DS,Shanmugasundram A,Silva-Franco F|Methods Mol Biol|2018
Added:
EuPathDB: a portal to eukaryotic pathogen databases.|Aurrecoechea C., Brestelli J., Brunk BP. et al.|Nucleic Acids Res.|2010
Standardized metadata for human pathogen/vector genomic sequences.|Dugan VG,Emrich SJ,Giraldo-Calderon GI et al.|PLoS One|2014
EuPathDB: The Eukaryotic Pathogen Genomics Database Resource.|Warrenfeltz S,Basenko EY,Crouch K,Harb OS,Kissinger JC,Roos DS,Shanmugasundram A,Silva-Franco F|Methods Mol Biol|2018
Removed:
EuPathDB: a portal to eukaryotic pathogen databases.|Aurrecoechea C., Brestelli J., Brunk BP., Fischer S., Gajria B., Gao X., Gingle A., Grant G., Harb OS., Heiges M., Innamorato F., Iodice J., Kissinger JC., Kraemer ET., Li W., Miller JA., Nayak V., Pennington C., Pinney DF., Roos DS., Ross C., Srinivasamoorthy G., Stoeckert CJ., Thibodeau R., Treatman C., Wang H., |Nucleic Acids Res.|2010
Standardized metadata for human pathogen/vector genomic sequences.|Dugan VG,Emrich SJ,Giraldo-Calderon GI,Harb OS,Newman RM,Pickett BE,Schriml LM,Stockwell TB,Stoeckert CJ Jr,Sullivan DE,Singh I,Ward DV,Yao A,Zheng J,Barrett T,Birren B,Brinkac L,Bruno VM,Caler E,Chapman S,Collins FH,Cuomo CA,Di Francesco V,Durkin S,Eppinger M,Feldgarden M,Fraser C,Fricke WF,Giovanni M,Henn MR,Hine E,Hotopp JD,Karsch-Mizrachi I,Kissinger JC,Lee EM,Mathur P,Mongodin EF,Murphy CI,Myers G,Neafsey DE,Nelson KE,Nierman WC,Puzak J,Rasko D,Roos DS,Sadzewicz L,Silva JC,Sobral B,Squires RB,Stevens RL,Tallon L,Tettelin H,Wentworth D,White O,Will R,Wortman J,Zhang Y,Scheuermann RH|PLoS One|2014
'dataProcesses' has been modified:
Before:
Sequence Retrieval and Download, data access, http://eupathdb.org/eupathdb/srt.jsp
AmoebaDB Download, data access, http://amoebadb.org/common/downloads/
CryptoDB Download, data access, http://cryptodb.org/common/downloads
GiardiaDB Download, data access, http://giardiadb.org/common/downloads
MicrosporidiaDB Download, data access, http://microsporidiadb.org/common/downloads
PyroPlasmaDB Download, data access, http://piroplasmadb.org/common/downloads
PlasmoDB Download, data access, http://plasmodb.org/common/downloads
ToxoDB Download, data access, http://toxodb.org/common/downloads
TrichDB Download, data access, http://trichdb.org/common/downloads
Search, data access, https://eupathdb.org/eupathdb/showApplication.do
Data Submission, data access, https://eupathdb.org/eupathdb/dataSubmission.jsp
Browse Data Sets, data access, https://eupathdb.org/eupathdb/app/search/dataset/AllDatasets/result
After:
Sequence Retrieval and Download, data access, https://veupathdb.org/veupathdb/app/fasta-tool
Submit Data, data curation, https://veupathdb.org/veupathdb/app/static-content/dataSubmission.html
Identify Sequences with BLAST, data access, https://veupathdb.org/veupathdb/app/search/genomic-sequence/SequencesBySimilarity
Companion: Annotate Parasite Genomes, data access, http://companion.gla.ac.uk/
EuPaGDT Design, data access, http://grna.ctegd.uga.edu/
Galaxy Data Analysis, data access, https://veupathdb.org/veupathdb/app/galaxy-orientation
Search by Gene ID, data access, https://veupathdb.org/veupathdb/app/search/transcript/GeneByLocusTag
Browse Data Sets, data access, https://veupathdb.org/veupathdb/app/search/dataset/AllDatasets/result
Added:
Sequence Retrieval and Download, data access, https://veupathdb.org/veupathdb/app/fasta-tool
Submit Data, data curation, https://veupathdb.org/veupathdb/app/static-content/dataSubmission.html
Identify Sequences with BLAST, data access, https://veupathdb.org/veupathdb/app/search/genomic-sequence/SequencesBySimilarity
Companion: Annotate Parasite Genomes, data access, http://companion.gla.ac.uk/
EuPaGDT Design, data access, http://grna.ctegd.uga.edu/
Galaxy Data Analysis, data access, https://veupathdb.org/veupathdb/app/galaxy-orientation
Search by Gene ID, data access, https://veupathdb.org/veupathdb/app/search/transcript/GeneByLocusTag
Browse Data Sets, data access, https://veupathdb.org/veupathdb/app/search/dataset/AllDatasets/result
Removed:
Sequence Retrieval and Download, data access, http://eupathdb.org/eupathdb/srt.jsp
AmoebaDB Download, data access, http://amoebadb.org/common/downloads/
CryptoDB Download, data access, http://cryptodb.org/common/downloads
GiardiaDB Download, data access, http://giardiadb.org/common/downloads
MicrosporidiaDB Download, data access, http://microsporidiadb.org/common/downloads
PyroPlasmaDB Download, data access, http://piroplasmadb.org/common/downloads
PlasmoDB Download, data access, http://plasmodb.org/common/downloads
ToxoDB Download, data access, http://toxodb.org/common/downloads
TrichDB Download, data access, http://trichdb.org/common/downloads
Search, data access, https://eupathdb.org/eupathdb/showApplication.do
Data Submission, data access, https://eupathdb.org/eupathdb/dataSubmission.jsp
Browse Data Sets, data access, https://eupathdb.org/eupathdb/app/search/dataset/AllDatasets/result
'shortname' has been modified:
Before: EuPathDB
After: VEuPathDB
'accessPoints' has been modified:
Before:
REST|http://eupathdb.org/eupathdb/serviceList.jsp|REST
After:
REST|https://veupathdb.org/veupathdb/app/static-content/content/VEuPathDB/webServices.html|VEuPathDB API
Added:
REST|https://veupathdb.org/veupathdb/app/static-content/content/VEuPathDB/webServices.html|VEuPathDB API
Removed:
REST|http://eupathdb.org/eupathdb/serviceList.jsp|REST
'homepage' has been modified:
Before: https://eupathdb.org/eupathdb/
After: https://veupathdb.org/veupathdb/app/
'description' has been modified:
Before: EuPathDB is an integrated database covering the eukaryotic pathogens. While each of the taxonomic groups within this resource is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all of these resources, and the opportunity to leverage orthology for searches across genera.
After: The Eukaryotic Pathogen, Vector and Host Informatics Resource (VEuPathDB) focuses on eukaryotic pathogens and invertebrate vectors of infectious diseases, , encompassing data from prior resources devoted to parasitic species (EuPathDB), fungi (FungiDB) and vector species (VectorBase). While each of the taxonomic groups within this resource is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all of these resources, and the opportunity to leverage orthology for searches across genera.
Edits to 'https://fairsharing.org/FAIRsharing.f94905' by 'The FAIRsharing Team' at 13:10, 19 Dec 2018 (approved):
'supportLinks' has been modified:
Before:
contact form|http://eupathdb.org/eupathdb/contact.do
help|http://www.youtube.com/user/EuPathDB/videos?sort=dd&flow=list&view=1
twitter|@eupathdb
After:
contact form|https://eupathdb.org/eupathdb/app/contact-us
help|https://youtube.com/user/EuPathDB/videos?sort=dd&flow=list&view=1
online documentation|https://eupathdb.org/eupathdb/showXmlDataContent.do?name=XmlQuestions.About
twitter|@eupathdb
Added:
contact form|https://eupathdb.org/eupathdb/app/contact-us
help|https://youtube.com/user/EuPathDB/videos?sort=dd&flow=list&view=1
online documentation|https://eupathdb.org/eupathdb/showXmlDataContent.do?name=XmlQuestions.About
Removed:
contact form|http://eupathdb.org/eupathdb/contact.do
help|http://www.youtube.com/user/EuPathDB/videos?sort=dd&flow=list&view=1
'tools' has been modified:
Before:
BLAST||http://eupathdb.org/eupathdb/showQuestion.do?questionFullName=UniversalQuestions.UnifiedBlast
Search Strategies||http://eupathdb.org/eupathdb/queries_tools.jsp
After:
BLAST||http://eupathdb.org/eupathdb/showQuestion.do?questionFullName=UniversalQuestions.UnifiedBlast
Added:
Removed:
Search Strategies||http://eupathdb.org/eupathdb/queries_tools.jsp
'dataProcesses' has been modified:
Before:
Sequence Retrieval and Download
AmoebaDB Download
CryptoDB Download
GiardiaDB Download
MicrosporidiaDB Download
PyroPlasmaDB Download
PlasmoDB Download
ToxoDB Download
TrichDB Download
After:
Sequence Retrieval and Download
AmoebaDB Download
CryptoDB Download
GiardiaDB Download
MicrosporidiaDB Download
PyroPlasmaDB Download
PlasmoDB Download
ToxoDB Download
TrichDB Download
Search
Data Submission
Browse Data Sets
Added:
Search
Data Submission
Browse Data Sets
Removed:
'miriam_id' has been modified:
Before: None
After:
'onto_domains' has been modified:
Before:
genome
After:
genome
orthologous
pathogen
Added:
orthologous
pathogen
Removed:
'homepage' has been modified:
Before: http://eupathdb.org
After: https://eupathdb.org/eupathdb/