Eukaryotic Pathogen, Vector and Host Informatics Resource

Abbreviation:VEuPathDB

Recommended

General Information

The Eukaryotic Pathogen, Vector and Host Informatics Resource (VEuPathDB) focuses on eukaryotic pathogens and invertebrate vectors of infectious diseases, , encompassing data from prior resources devoted to parasitic species (EuPathDB), fungi (FungiDB) and vector species (VectorBase). While each of the taxonomic groups within this resource is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all of these resources, and the opportunity to leverage orthology for searches across genera.

Homepage https://veupathdb.org/veupathdb/app/

Countries that developed this resource Uganda , United Kingdom , United States

Taxonomic range

Knowledge Domains

Subjects

In the following recommendations:

How to cite this record FAIRsharing.org: VEuPathDB; Eukaryotic Pathogen, Vector and Host Informatics Resource; DOI: https://doi.org/10.25504/FAIRsharing.f94905; Last edited: March 1, 2021, 4:23 p.m.; Last accessed: Apr 11 2021 2:49 a.m.

Publication for citation EuPathDB: The Eukaryotic Pathogen Genomics Database Resource. Warrenfeltz S,Basenko EY,Crouch K,Harb OS,Kissinger JC,Roos DS,Shanmugasundram A,Silva-Franco F; Methods Mol Biol ; 2018; 10.1007/978-1-4939-7737-6_5;

This record is maintained by D.S.Roos and jdebarry

Record updated: March 1, 2021, 4:22 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.f94905' by 'The FAIRsharing Team' at 16:22, 01 Mar 2021 (approved):

	'grants' has been modified:
		Before:
			212929
			218288
			HHSN75N93019C00077
		After:
			212929/Z/18/Z
			218288/Z/19/Z
			HHSN75N93019C00077
		Added:
			212929/Z/18/Z
			218288/Z/19/Z
		Removed:
			212929
			218288

Edits to 'https://fairsharing.org/FAIRsharing.f94905' by 'The FAIRsharing Team' at 10:55, 01 Mar 2021 (approved):

	'publications' has been modified:
		Before:
			EuPathDB: a portal to eukaryotic pathogen databases.|Aurrecoechea C., Brestelli J., Brunk BP. et al.|Nucleic Acids Res.|2010
			ApiDB: integrated resources for the apicomplexan bioinformatics resource center.|Aurrecoechea C, Heiges M, Wang H, Wang Z, Fischer S, Rhodes P, Miller J, Kraemer E, Stoeckert CJ Jr, Roos DS, Kissinger JC.|Nucleic Acids Res.|2007
			Standardized metadata for human pathogen/vector genomic sequences.|Dugan VG,Emrich SJ,Giraldo-Calderon GI et al.|PLoS One|2014
			The Eukaryotic Pathogen Databases: a functional genomic resource integrating data from human and veterinary parasites.|Harb OS,Roos DS|Methods Mol Biol|2014
			SchistoDB: an updated genome resource for the three key schistosomes of humans.|Zerlotini A,Aguiar ER,Yu F,Xu H,Li Y,Young ND,Gasser RB,Protasio AV,Berriman M,Roos DS,Kissinger JC,Oliveira G|Nucleic Acids Res|2012
			EuPathDB: The Eukaryotic Pathogen Genomics Database Resource.|Warrenfeltz S,Basenko EY,Crouch K,Harb OS,Kissinger JC,Roos DS,Shanmugasundram A,Silva-Franco F|Methods Mol Biol|2018
		After:
			EuPathDB: a portal to eukaryotic pathogen databases.|Aurrecoechea C., Brestelli J., Brunk BP. et al.|Nucleic Acids Res.|2010
			Standardized metadata for human pathogen/vector genomic sequences.|Dugan VG,Emrich SJ,Giraldo-Calderon GI et al.|PLoS One|2014
			The Eukaryotic Pathogen Databases: a functional genomic resource integrating data from human and veterinary parasites.|Harb OS,Roos DS|Methods Mol Biol|2014
			EuPathDB: The Eukaryotic Pathogen Genomics Database Resource.|Warrenfeltz S,Basenko EY,Crouch K,Harb OS,Kissinger JC,Roos DS,Shanmugasundram A,Silva-Franco F|Methods Mol Biol|2018
		Added:
		Removed:
			ApiDB: integrated resources for the apicomplexan bioinformatics resource center.|Aurrecoechea C, Heiges M, Wang H, Wang Z, Fischer S, Rhodes P, Miller J, Kraemer E, Stoeckert CJ Jr, Roos DS, Kissinger JC.|Nucleic Acids Res.|2007
			SchistoDB: an updated genome resource for the three key schistosomes of humans.|Zerlotini A,Aguiar ER,Yu F,Xu H,Li Y,Young ND,Gasser RB,Protasio AV,Berriman M,Roos DS,Kissinger JC,Oliveira G|Nucleic Acids Res|2012

Edits to 'https://fairsharing.org/FAIRsharing.f94905' by 'The FAIRsharing Team' at 10:42, 01 Mar 2021 (approved):

	'organizations' has been modified:
		Before:
			Bill and Melinda Gates Foundation, Seattle, Washington, USA|http://www.gatesfoundation.org|Funds
			National Institute of Allergy and Infectious Diseases (NIAD), Bethesda, MD, USA|http://www.niaid.nih.gov/|Funds
			Institute of Integrative Biology, University of Liverpool, Liverpool, UK|https://www.liverpool.ac.uk/integrative-biology/|Maintains
			The Wellcome Trust Centre for Molecular Parasitology|http://www.gla.ac.uk/researchinstitutes/iii/wtcmp/|Maintains
			The Wellcome Trust Sanger Institute, The Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK|http://www.sanger.ac.uk|Maintains
			Bioinformatics Resource Centers, National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD, USA|https://www.niaid.nih.gov/research/bioinformatics-resource-centers|Maintains
		After:
			Bill and Melinda Gates Foundation, Seattle, Washington, USA|http://www.gatesfoundation.org|Funds
			The Wellcome Trust, UK|https://wellcome.ac.uk/|Funds
			National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD, USA|https://www.niaid.nih.gov/|Funds
			Bioinformatics Resource Centers, National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD, USA|https://www.niaid.nih.gov/research/bioinformatics-resource-centers|Maintains
		Added:
			The Wellcome Trust, UK|https://wellcome.ac.uk/|Funds
			National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD, USA|https://www.niaid.nih.gov/|Funds
		Removed:
			National Institute of Allergy and Infectious Diseases (NIAD), Bethesda, MD, USA|http://www.niaid.nih.gov/|Funds
			Institute of Integrative Biology, University of Liverpool, Liverpool, UK|https://www.liverpool.ac.uk/integrative-biology/|Maintains
			The Wellcome Trust Centre for Molecular Parasitology|http://www.gla.ac.uk/researchinstitutes/iii/wtcmp/|Maintains
			The Wellcome Trust Sanger Institute, The Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK|http://www.sanger.ac.uk|Maintains

	'related_databases' has been modified:
		Before:
			Fungal and Oomycete genomics resource
			Cryptosporidum Genomics Resource
			GiardiaDB
			MicrosporidiaDB
			PlasmoDB
			Toxoplasma Genomics Resource
			TrichDB
			TriTrypDB
			AmoebaDB
			ClinEpiDB
		After:
			Fungal and Oomycete genomics resource
			Cryptosporidum Genomics Resource
			GiardiaDB
			MicrosporidiaDB
			PlasmoDB
			Toxoplasma Genomics Resource
			TrichDB
			TriTrypDB
			AmoebaDB
			VectorBase
			ClinEpiDB
		Added:
			VectorBase
		Removed:

	'supportLinks' has been modified:
		Before:
			contact form|https://eupathdb.org/eupathdb/app/contact-us
			help|https://tritrypdb.org/tritrypdb/app/static-content/landing.html
			online documentation|https://eupathdb.org/eupathdb/showXmlDataContent.do?name=XmlQuestions.About
			twitter|@eupathdb
		After:
			contact form|https://veupathdb.org/veupathdb/app/contact-us
			help|https://veupathdb.org/veupathdb/app/static-content/landing.html
			help|https://veupathdb.org/veupathdb/app/static-content/glossary.html
			help|https://static-content.veupathdb.org/documents/VEuPathDB_User_Documentation.pdf
			online documentation|https://veupathdb.org/veupathdb/app/search/organism/GenomeDataTypes/result
			online documentation|https://veupathdb.org/veupathdb/app/static-content/about.html
			online documentation|https://veupathdb.org/pubcrawler/EuPathDB/
			online documentation|https://veupathdb.org/veupathdb/app/static-content/methods.html
			twitter|@VEuPathDB
		Added:
			contact form|https://veupathdb.org/veupathdb/app/contact-us
			help|https://veupathdb.org/veupathdb/app/static-content/landing.html
			help|https://veupathdb.org/veupathdb/app/static-content/glossary.html
			help|https://static-content.veupathdb.org/documents/VEuPathDB_User_Documentation.pdf
			online documentation|https://veupathdb.org/veupathdb/app/search/organism/GenomeDataTypes/result
			online documentation|https://veupathdb.org/veupathdb/app/static-content/about.html
			online documentation|https://veupathdb.org/pubcrawler/EuPathDB/
			online documentation|https://veupathdb.org/veupathdb/app/static-content/methods.html
			twitter|@VEuPathDB
		Removed:
			contact form|https://eupathdb.org/eupathdb/app/contact-us
			help|https://tritrypdb.org/tritrypdb/app/static-content/landing.html
			online documentation|https://eupathdb.org/eupathdb/showXmlDataContent.do?name=XmlQuestions.About
			twitter|@eupathdb

	'name' has been modified:
		Before: Eukaryotic Pathogen Database Resources
		After: Eukaryotic Pathogen, Vector and Host Informatics Resource

	'licences' has been modified:
		Before:
		After:
			VEuPathDB Data Submission and Release Policies|https://static-content.veupathdb.org/documents/VEuPathDB_Data_Sub_Release_policy_rev_02April2020.pdf|Data
		Added:
			VEuPathDB Data Submission and Release Policies|https://static-content.veupathdb.org/documents/VEuPathDB_Data_Sub_Release_policy_rev_02April2020.pdf|Data
		Removed:

	'tools' has been modified:
		Before:
			BLAST||http://eupathdb.org/eupathdb/showQuestion.do?questionFullName=UniversalQuestions.UnifiedBlast
		After:
		Added:
		Removed:
			BLAST||http://eupathdb.org/eupathdb/showQuestion.do?questionFullName=UniversalQuestions.UnifiedBlast

	'onto_disciplines' has been modified:
		Before:
			Biomedical Science
			Life Science
		After:
			Comparative Genomics
			Genomics
			Population Genetics
		Added:
			Comparative Genomics
			Genomics
			Population Genetics
		Removed:
			Biomedical Science
			Life Science

	'onto_domains' has been modified:
		Before:
			genome
			orthologous
			pathogen
		After:
			genome
			orthologous
			pathogen
			phenotype
		Added:
			phenotype
		Removed:

	'grants' has been modified:
		Before:
		After:
			212929
			218288
			HHSN75N93019C00077
		Added:
			212929
			218288
			HHSN75N93019C00077
		Removed:

	'publications' has been modified:
		Before:
			EuPathDB: a portal to eukaryotic pathogen databases.|Aurrecoechea C., Brestelli J., Brunk BP., Fischer S., Gajria B., Gao X., Gingle A., Grant G., Harb OS., Heiges M., Innamorato F., Iodice J., Kissinger JC., Kraemer ET., Li W., Miller JA., Nayak V., Pennington C., Pinney DF., Roos DS., Ross C., Srinivasamoorthy G., Stoeckert CJ., Thibodeau R., Treatman C., Wang H., |Nucleic Acids Res.|2010
			ApiDB: integrated resources for the apicomplexan bioinformatics resource center.|Aurrecoechea C, Heiges M, Wang H, Wang Z, Fischer S, Rhodes P, Miller J, Kraemer E, Stoeckert CJ Jr, Roos DS, Kissinger JC.|Nucleic Acids Res.|2007
			Standardized metadata for human pathogen/vector genomic sequences.|Dugan VG,Emrich SJ,Giraldo-Calderon GI,Harb OS,Newman RM,Pickett BE,Schriml LM,Stockwell TB,Stoeckert CJ Jr,Sullivan DE,Singh I,Ward DV,Yao A,Zheng J,Barrett T,Birren B,Brinkac L,Bruno VM,Caler E,Chapman S,Collins FH,Cuomo CA,Di Francesco V,Durkin S,Eppinger M,Feldgarden M,Fraser C,Fricke WF,Giovanni M,Henn MR,Hine E,Hotopp JD,Karsch-Mizrachi I,Kissinger JC,Lee EM,Mathur P,Mongodin EF,Murphy CI,Myers G,Neafsey DE,Nelson KE,Nierman WC,Puzak J,Rasko D,Roos DS,Sadzewicz L,Silva JC,Sobral B,Squires RB,Stevens RL,Tallon L,Tettelin H,Wentworth D,White O,Will R,Wortman J,Zhang Y,Scheuermann RH|PLoS One|2014
			The Eukaryotic Pathogen Databases: a functional genomic resource integrating data from human and veterinary parasites.|Harb OS,Roos DS|Methods Mol Biol|2014
			SchistoDB: an updated genome resource for the three key schistosomes of humans.|Zerlotini A,Aguiar ER,Yu F,Xu H,Li Y,Young ND,Gasser RB,Protasio AV,Berriman M,Roos DS,Kissinger JC,Oliveira G|Nucleic Acids Res|2012
		After:
			EuPathDB: a portal to eukaryotic pathogen databases.|Aurrecoechea C., Brestelli J., Brunk BP. et al.|Nucleic Acids Res.|2010
			ApiDB: integrated resources for the apicomplexan bioinformatics resource center.|Aurrecoechea C, Heiges M, Wang H, Wang Z, Fischer S, Rhodes P, Miller J, Kraemer E, Stoeckert CJ Jr, Roos DS, Kissinger JC.|Nucleic Acids Res.|2007
			Standardized metadata for human pathogen/vector genomic sequences.|Dugan VG,Emrich SJ,Giraldo-Calderon GI et al.|PLoS One|2014
			The Eukaryotic Pathogen Databases: a functional genomic resource integrating data from human and veterinary parasites.|Harb OS,Roos DS|Methods Mol Biol|2014
			SchistoDB: an updated genome resource for the three key schistosomes of humans.|Zerlotini A,Aguiar ER,Yu F,Xu H,Li Y,Young ND,Gasser RB,Protasio AV,Berriman M,Roos DS,Kissinger JC,Oliveira G|Nucleic Acids Res|2012
			EuPathDB: The Eukaryotic Pathogen Genomics Database Resource.|Warrenfeltz S,Basenko EY,Crouch K,Harb OS,Kissinger JC,Roos DS,Shanmugasundram A,Silva-Franco F|Methods Mol Biol|2018
		Added:
			EuPathDB: a portal to eukaryotic pathogen databases.|Aurrecoechea C., Brestelli J., Brunk BP. et al.|Nucleic Acids Res.|2010
			Standardized metadata for human pathogen/vector genomic sequences.|Dugan VG,Emrich SJ,Giraldo-Calderon GI et al.|PLoS One|2014
			EuPathDB: The Eukaryotic Pathogen Genomics Database Resource.|Warrenfeltz S,Basenko EY,Crouch K,Harb OS,Kissinger JC,Roos DS,Shanmugasundram A,Silva-Franco F|Methods Mol Biol|2018
		Removed:
			EuPathDB: a portal to eukaryotic pathogen databases.|Aurrecoechea C., Brestelli J., Brunk BP., Fischer S., Gajria B., Gao X., Gingle A., Grant G., Harb OS., Heiges M., Innamorato F., Iodice J., Kissinger JC., Kraemer ET., Li W., Miller JA., Nayak V., Pennington C., Pinney DF., Roos DS., Ross C., Srinivasamoorthy G., Stoeckert CJ., Thibodeau R., Treatman C., Wang H., |Nucleic Acids Res.|2010
			Standardized metadata for human pathogen/vector genomic sequences.|Dugan VG,Emrich SJ,Giraldo-Calderon GI,Harb OS,Newman RM,Pickett BE,Schriml LM,Stockwell TB,Stoeckert CJ Jr,Sullivan DE,Singh I,Ward DV,Yao A,Zheng J,Barrett T,Birren B,Brinkac L,Bruno VM,Caler E,Chapman S,Collins FH,Cuomo CA,Di Francesco V,Durkin S,Eppinger M,Feldgarden M,Fraser C,Fricke WF,Giovanni M,Henn MR,Hine E,Hotopp JD,Karsch-Mizrachi I,Kissinger JC,Lee EM,Mathur P,Mongodin EF,Murphy CI,Myers G,Neafsey DE,Nelson KE,Nierman WC,Puzak J,Rasko D,Roos DS,Sadzewicz L,Silva JC,Sobral B,Squires RB,Stevens RL,Tallon L,Tettelin H,Wentworth D,White O,Will R,Wortman J,Zhang Y,Scheuermann RH|PLoS One|2014

	'dataProcesses' has been modified:
		Before:
			Sequence Retrieval and Download, data access, http://eupathdb.org/eupathdb/srt.jsp
			AmoebaDB Download, data access, http://amoebadb.org/common/downloads/
			CryptoDB Download, data access, http://cryptodb.org/common/downloads
			GiardiaDB Download, data access, http://giardiadb.org/common/downloads
			MicrosporidiaDB Download, data access, http://microsporidiadb.org/common/downloads
			PyroPlasmaDB Download, data access, http://piroplasmadb.org/common/downloads
			PlasmoDB Download, data access, http://plasmodb.org/common/downloads
			ToxoDB Download, data access, http://toxodb.org/common/downloads
			TrichDB Download, data access, http://trichdb.org/common/downloads
			Search, data access, https://eupathdb.org/eupathdb/showApplication.do
			Data Submission, data access, https://eupathdb.org/eupathdb/dataSubmission.jsp
			Browse Data Sets, data access, https://eupathdb.org/eupathdb/app/search/dataset/AllDatasets/result
		After:
			Sequence Retrieval and Download, data access, https://veupathdb.org/veupathdb/app/fasta-tool
			Submit Data, data curation, https://veupathdb.org/veupathdb/app/static-content/dataSubmission.html
			Identify Sequences with BLAST, data access, https://veupathdb.org/veupathdb/app/search/genomic-sequence/SequencesBySimilarity
			Companion: Annotate Parasite Genomes, data access, http://companion.gla.ac.uk/
			EuPaGDT Design, data access, http://grna.ctegd.uga.edu/
			Galaxy Data Analysis, data access, https://veupathdb.org/veupathdb/app/galaxy-orientation
			Search by Gene ID, data access, https://veupathdb.org/veupathdb/app/search/transcript/GeneByLocusTag
			Browse Data Sets, data access, https://veupathdb.org/veupathdb/app/search/dataset/AllDatasets/result
		Added:
			Sequence Retrieval and Download, data access, https://veupathdb.org/veupathdb/app/fasta-tool
			Submit Data, data curation, https://veupathdb.org/veupathdb/app/static-content/dataSubmission.html
			Identify Sequences with BLAST, data access, https://veupathdb.org/veupathdb/app/search/genomic-sequence/SequencesBySimilarity
			Companion: Annotate Parasite Genomes, data access, http://companion.gla.ac.uk/
			EuPaGDT Design, data access, http://grna.ctegd.uga.edu/
			Galaxy Data Analysis, data access, https://veupathdb.org/veupathdb/app/galaxy-orientation
			Search by Gene ID, data access, https://veupathdb.org/veupathdb/app/search/transcript/GeneByLocusTag
			Browse Data Sets, data access, https://veupathdb.org/veupathdb/app/search/dataset/AllDatasets/result
		Removed:
			Sequence Retrieval and Download, data access, http://eupathdb.org/eupathdb/srt.jsp
			AmoebaDB Download, data access, http://amoebadb.org/common/downloads/
			CryptoDB Download, data access, http://cryptodb.org/common/downloads
			GiardiaDB Download, data access, http://giardiadb.org/common/downloads
			MicrosporidiaDB Download, data access, http://microsporidiadb.org/common/downloads
			PyroPlasmaDB Download, data access, http://piroplasmadb.org/common/downloads
			PlasmoDB Download, data access, http://plasmodb.org/common/downloads
			ToxoDB Download, data access, http://toxodb.org/common/downloads
			TrichDB Download, data access, http://trichdb.org/common/downloads
			Search, data access, https://eupathdb.org/eupathdb/showApplication.do
			Data Submission, data access, https://eupathdb.org/eupathdb/dataSubmission.jsp
			Browse Data Sets, data access, https://eupathdb.org/eupathdb/app/search/dataset/AllDatasets/result

	'shortname' has been modified:
		Before: EuPathDB
		After: VEuPathDB

	'accessPoints' has been modified:
		Before:
			REST|http://eupathdb.org/eupathdb/serviceList.jsp|REST
		After:
			REST|https://veupathdb.org/veupathdb/app/static-content/content/VEuPathDB/webServices.html|VEuPathDB API
		Added:
			REST|https://veupathdb.org/veupathdb/app/static-content/content/VEuPathDB/webServices.html|VEuPathDB API
		Removed:
			REST|http://eupathdb.org/eupathdb/serviceList.jsp|REST

	'homepage' has been modified:
		Before: https://eupathdb.org/eupathdb/
		After: https://veupathdb.org/veupathdb/app/

	'description' has been modified:
		Before: EuPathDB is an integrated database covering the eukaryotic pathogens. While each of the taxonomic groups within this resource is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all of these resources, and the opportunity to leverage orthology for searches across genera. 
		After: The Eukaryotic Pathogen, Vector and Host Informatics Resource (VEuPathDB) focuses on eukaryotic pathogens and invertebrate vectors of infectious diseases, , encompassing data from prior resources devoted to parasitic species (EuPathDB), fungi (FungiDB) and vector species (VectorBase). While each of the taxonomic groups within this resource is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all of these resources, and the opportunity to leverage orthology for searches across genera.

Edits to 'https://fairsharing.org/FAIRsharing.f94905' by 'The FAIRsharing Team' at 13:10, 19 Dec 2018 (approved):

	'supportLinks' has been modified:
		Before:
			contact form|http://eupathdb.org/eupathdb/contact.do
			help|http://www.youtube.com/user/EuPathDB/videos?sort=dd&flow=list&view=1
			twitter|@eupathdb
		After:
			contact form|https://eupathdb.org/eupathdb/app/contact-us
			help|https://youtube.com/user/EuPathDB/videos?sort=dd&flow=list&view=1
			online documentation|https://eupathdb.org/eupathdb/showXmlDataContent.do?name=XmlQuestions.About
			twitter|@eupathdb
		Added:
			contact form|https://eupathdb.org/eupathdb/app/contact-us
			help|https://youtube.com/user/EuPathDB/videos?sort=dd&flow=list&view=1
			online documentation|https://eupathdb.org/eupathdb/showXmlDataContent.do?name=XmlQuestions.About
		Removed:
			contact form|http://eupathdb.org/eupathdb/contact.do
			help|http://www.youtube.com/user/EuPathDB/videos?sort=dd&flow=list&view=1

	'tools' has been modified:
		Before:
			BLAST||http://eupathdb.org/eupathdb/showQuestion.do?questionFullName=UniversalQuestions.UnifiedBlast
			Search Strategies||http://eupathdb.org/eupathdb/queries_tools.jsp
		After:
			BLAST||http://eupathdb.org/eupathdb/showQuestion.do?questionFullName=UniversalQuestions.UnifiedBlast
		Added:
		Removed:
			Search Strategies||http://eupathdb.org/eupathdb/queries_tools.jsp

	'dataProcesses' has been modified:
		Before:
			Sequence Retrieval and Download
			AmoebaDB Download
			CryptoDB Download
			GiardiaDB Download
			MicrosporidiaDB Download
			PyroPlasmaDB Download
			PlasmoDB Download
			ToxoDB Download
			TrichDB Download
		After:
			Sequence Retrieval and Download
			AmoebaDB Download
			CryptoDB Download
			GiardiaDB Download
			MicrosporidiaDB Download
			PyroPlasmaDB Download
			PlasmoDB Download
			ToxoDB Download
			TrichDB Download
			Search
			Data Submission
			Browse Data Sets
		Added:
			Search
			Data Submission
			Browse Data Sets
		Removed:

	'miriam_id' has been modified:
		Before: None
		After: 

	'onto_domains' has been modified:
		Before:
			genome
		After:
			genome
			orthologous
			pathogen
		Added:
			orthologous
			pathogen
		Removed:

	'homepage' has been modified:
		Before: http://eupathdb.org
		After: https://eupathdb.org/eupathdb/

In Collections

NIH-supported data repositories

Data Citation Implementation

Open Science Prize

EOSC-Life

ELIXIR UK node resources

Support

General

contact form	Contact Form
help	How to Use
help	VEuPathDB Glossary
help	User Documentation (PDF)
online documentation	Statistics
online documentation	About Us
online documentation	Related Publications
online documentation	Data Analysis Methods
twitter	@VEuPathDB

Additional Information

Contact

Christian J. Stoeckert Jr.

Tools

No tools defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

VEuPathDB Data Submission and Release Policies

Data Curation

Submit Data

https://veupathdb.org/veupathdb/app/static-content/dataSubmission.html

Data Access

Sequence Retrieval and Download	https://veupathdb.org/veupathdb/app/fasta-tool
Identify Sequences with BLAST	https://veupathdb.org/veupathdb/app/search/genomic-sequence/SequencesB ...
Companion: Annotate Parasite Genomes	http://companion.gla.ac.uk/
EuPaGDT Design	http://grna.ctegd.uga.edu/
Galaxy Data Analysis	https://veupathdb.org/veupathdb/app/galaxy-orientation
Search by Gene ID	https://veupathdb.org/veupathdb/app/search/transcript/GeneByLocusTag
Browse Data Sets	https://veupathdb.org/veupathdb/app/search/dataset/AllDatasets/result

REST Web Services

VEuPathDB API

https://veupathdb.org/veupathdb/app/static-content/content/VEuPathDB/w ...

Publications

EuPathDB: a portal to eukaryotic pathogen databases.

Aurrecoechea C., Brestelli J., Brunk BP. et al.
Nucleic Acids Res. 2010

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Standardized metadata for human pathogen/vector genomic sequences.

Dugan VG,Emrich SJ,Giraldo-Calderon GI et al.
PLoS One 2014

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The Eukaryotic Pathogen Databases: a functional genomic resource integrating data from human and veterinary parasites.

Harb OS,Roos DS
Methods Mol Biol 2014

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EuPathDB: The Eukaryotic Pathogen Genomics Database Resource.

Warrenfeltz S,Basenko EY,Crouch K,Harb OS,Kissinger JC,Roos DS,Shanmugasundram A,Silva-Franco F
Methods Mol Biol 2018

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

Common Metadata Elements for Cataloging Biomedical Datasets

Terminology Artifacts

Ontology for Biomedical Investigations

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Implementing Policies

Credit

Record Maintainer

This record is maintained by D.S.Roos and jdebarry

Funds

Bill and Melinda Gates Foundation, Seattle, Washington, USA (Charitable foundation)
The Wellcome Trust, UK (Charitable foundation)
National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD, USA (Government body)

Maintains

Bioinformatics Resource Centers, National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD, USA (Government body)

Grant Number(s)

212929/Z/18/Z (The Wellcome Trust, UK)
218288/Z/19/Z (The Wellcome Trust, UK)
HHSN75N93019C00077 (National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD, USA)

Eukaryotic Pathogen, Vector and Host Informatics Resource

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