Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource

Abbreviation:MGI

Recommended

General Information

MGI is the international database resource for the laboratory mouse, providing integrated genetic, genomic, and biological data to facilitate the study of human health and disease. Data includes gene characterization, nomenclature, mapping, gene homologies among mammals, sequence links, phenotypes, allelic variants and mutants, and strain data.

Homepage http://www.informatics.jax.org/

Developed in United States

Created in 1994

Taxonomic range

Mus musculus

Knowledge Domains BETA

Subjects BETA

User-defined Tags

Chromosomal element nomenclature

In the following recommendations:

How to cite this record FAIRsharing.org: MGI; Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource; DOI: https://doi.org/10.25504/FAIRsharing.fcwyhz; Last edited: Jan. 8, 2019, 1:18 p.m.; Last accessed: Mar 21 2019 9 p.m.

This record is maintained by jberghout ORCID and ShawMGI

Record updated: Nov. 21, 2018, 11:49 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.fcwyhz' by 'The FAIRsharing Team' at 11:49, 21 Nov 2018 (not approved):

	'domains' has been modified:
		Before:
			Allele
			Chromosomal element nomenclature
			Cytogenetic map
			Disease
			Disease process modeling
			Gene
			Gene Ontology (GO) enrichment
			Gene expression data
			Gene name
			Genome map
			Homologous
			Life Science
			Mutation
			Ontology and terminology
			Phenotype
			Quantitative trait loci (QTL)
			Sequence
			Single nucleotide polymorphism (SNP)
		After:
			Allele
			Chromosomal element nomenclature
			Cytogenetic map
			Disease
			Disease process modeling
			Gene
			Gene Ontology (GO) enrichment
			Gene expression data
			Gene name
			Genetic polymorphism
			Genome map
			Homologous
			Life Science
			Mutation
			Ontology and terminology
			Phenotype
			Quantitative trait loci (QTL)
			Sequence
			Single nucleotide polymorphism (SNP)
		Added:
			Genetic polymorphism
		Removed:

	'name' has been modified:
		Before:  Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
		After: Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource

Edits to 'https://fairsharing.org/FAIRsharing.fcwyhz' by 'The FAIRsharing Team' at 11:40, 14 Nov 2017 (approved):

	'domains' has been modified:
		Before:
			Allele||http://purl.obolibrary.org/obo/SO_0001023
			Chromosomal element nomenclature||
			Cytogenetic map||http://edamontology.org/data_1283
			DNA polymorphism||http://edamontology.org/topic_2885
			Disease|information content entity|http://edamontology.org/topic_0634
			Disease process modeling|process|http://purl.obolibrary.org/obo/ERO_0100148
			Gene|property|http://purl.obolibrary.org/obo/SO_0000704
			Gene Ontology (GO) enrichment|None|http://edamontology.org/data_3754
			Gene expression data|x|http://edamontology.org/data_2603
			Gene name||http://edamontology.org/data_2299
			Genome map||http://edamontology.org/data_1288
			Life Science|domain|
			Mutation||http://purl.obolibrary.org/obo/MI_0118
			Ontology and terminology||http://edamontology.org/topic_0089
			Phenotype|information content entity|http://purl.obolibrary.org/obo/OGMS_0000023
			Quantitative trait loci (QTL)|information content entity|http://purl.obolibrary.org/obo/SO_0000771
			Sequence||http://edamontology.org/data_2044
			Single nucleotide polymorphism (SNP)|None|http://purl.obolibrary.org/obo/SO_0000694
		After:
			Allele||http://purl.obolibrary.org/obo/SO_0001023
			Chromosomal element nomenclature||
			Cytogenetic map||http://edamontology.org/data_1283
			DNA polymorphism||http://edamontology.org/topic_2885
			Disease|information content entity|http://edamontology.org/topic_0634
			Disease process modeling|process|http://purl.obolibrary.org/obo/ERO_0100148
			Gene|property|http://purl.obolibrary.org/obo/SO_0000704
			Gene Ontology (GO) enrichment|None|http://edamontology.org/data_3754
			Gene expression data|x|http://edamontology.org/data_2603
			Gene name||http://edamontology.org/data_2299
			Genome map||http://edamontology.org/data_1288
			Life Science|domain|
			Mutation||http://purl.obolibrary.org/obo/MI_0118
			Ontology and terminology||http://edamontology.org/topic_0089
			Phenotype|information content entity|http://purl.obolibrary.org/obo/OGMS_0000023
			Quantitative trait loci (QTL)|information content entity|http://purl.obolibrary.org/obo/SO_0000771
			Sequence||http://edamontology.org/data_2044
			Single nucleotide polymorphism (SNP)|None|http://purl.obolibrary.org/obo/SO_0000694
			Homologous||http://purl.obolibrary.org/obo/SO_0000857
		Added:
			Homologous||http://purl.obolibrary.org/obo/SO_0000857
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.fcwyhz' by 'ShawMGI' at 19:02, 03 Nov 2017 (approved):

	'domains' has been modified:
		Before:
			Allele||http://purl.obolibrary.org/obo/SO_0001023
			Chromosomal element nomenclature||
			Cytogenetic map||http://edamontology.org/data_1283
			DNA polymorphism||http://edamontology.org/topic_2885
			Disease|information content entity|http://edamontology.org/topic_0634
			Disease process modeling|process|http://purl.obolibrary.org/obo/ERO_0100148
			Gene|property|http://purl.obolibrary.org/obo/SO_0000704
			Gene Ontology (GO) enrichment|None|http://edamontology.org/data_3754
			Gene expression data|x|http://edamontology.org/data_2603
			Gene name||http://edamontology.org/data_2299
			Genome map||http://edamontology.org/data_1288
			Life Science|domain|
			Mutation||http://purl.obolibrary.org/obo/MI_0118
			Ontology and terminology||http://edamontology.org/topic_0089
			Phenotype|information content entity|http://purl.obolibrary.org/obo/OGMS_0000023
			Quantitative trait loci (QTL)|information content entity|http://purl.obolibrary.org/obo/SO_0000771
			Sequence||http://edamontology.org/data_2044
			Single nucleotide polymorphism (SNP)|None|http://purl.obolibrary.org/obo/SO_0000694
		After:
			Allele||http://purl.obolibrary.org/obo/SO_0001023
			Chromosomal element nomenclature||
			Cytogenetic map||http://edamontology.org/data_1283
			DNA polymorphism||http://edamontology.org/topic_2885
			Disease|information content entity|http://edamontology.org/topic_0634
			Disease process modeling|process|http://purl.obolibrary.org/obo/ERO_0100148
			Gene|property|http://purl.obolibrary.org/obo/SO_0000704
			Gene Ontology (GO) enrichment|None|http://edamontology.org/data_3754
			Gene expression data|x|http://edamontology.org/data_2603
			Gene name||http://edamontology.org/data_2299
			Genome map||http://edamontology.org/data_1288
			Life Science|domain|
			Mutation||http://purl.obolibrary.org/obo/MI_0118
			Ontology and terminology||http://edamontology.org/topic_0089
			Phenotype|information content entity|http://purl.obolibrary.org/obo/OGMS_0000023
			Quantitative trait loci (QTL)|information content entity|http://purl.obolibrary.org/obo/SO_0000771
			Sequence||http://edamontology.org/data_2044
			Single nucleotide polymorphism (SNP)|None|http://purl.obolibrary.org/obo/SO_0000694
			Homology|information content entity|http://purl.obolibrary.org/obo/HOM_0000001
		Added:
			Homology|information content entity|http://purl.obolibrary.org/obo/HOM_0000001
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.fcwyhz' by 'ShawMGI' at 19:55, 20 Oct 2017 (approved):

	'contactName' has been modified:
		Before:
			David Shaw
		After:
			MGI User Support
		Added:
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.fcwyhz' by 'ShawMGI' at 19:50, 20 Oct 2017 (approved):

	'related_standards' has been modified:
		Before:
			bsg-s000046|Sequence Ontology
			bsg-s000089|Gene Ontology
			bsg-s000129|Mammalian Phenotype Ontology
			bsg-s000228|FASTA Sequence Format
			bsg-s000192|Minimal Information for Mouse Phenotyping Procedures
		After:
			bsg-s000046|Sequence Ontology
			bsg-s000089|Gene Ontology
			bsg-s000093|Disease Ontology
			bsg-s000131|Human Phenotype Ontology
			bsg-s000129|Mammalian Phenotype Ontology
			bsg-s000228|FASTA Sequence Format
			bsg-s000192|Minimal Information for Mouse Phenotyping Procedures
		Added:
			bsg-s000093|Disease Ontology
			bsg-s000131|Human Phenotype Ontology
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.fcwyhz' by 'ShawMGI' at 19:28, 20 Oct 2017 (approved):

	'contactName' has been modified:
		Before:
			Joanne Berghout
		After:
			David Shaw
		Added:
		Removed:

In Collections

Data Citation Implementation

Open Science Prize

NIH-supported data repositories

Support

General

help	http://www.informatics.jax.org/mgihome/s ...
Mailing List	None
training	http://www.informatics.jax.org/mgihome/o ...
twitter	@mgi_mouse

Additional Information

Contact

MGI User Support

Tools

submit	http://www.informatics.jax.org/submit.shtml
search	http://www.informatics.jax.org/allsearch.shtml
Batch Query	http://www.informatics.jax.org/batch
MouseMine	http://www.mousemine.org/mousemine/begin.do

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Academic use
Attribution required
Restrictions on use
Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0

Data Access

Download

http://www.informatics.jax.org/downloads/reports/index.html

SOAP Web Services

SOAP:

http://www.mousemine.org/mousemine/api.do

Publications

The Mouse Genome Database (MGD): from genes to mice--a community resource for mouse biology.

Eppig JT., Bult CJ., Kadin JA., Richardson JE., Blake JA., Anagnostopoulos A., Baldarelli RM., Baya M., Beal JS., Bello SM., Boddy WJ., Bradt DW., Burkart DL., Butler NE., Campbell J., Cassell MA., Corbani LE., Cousins SL., Dahmen DJ., Dene H., Diehl AD., Drabkin HJ., Frazer KS., Frost P., Glass LH., Goldsmith CW., Grant PL., Lennon-Pierce M., Lewis J., Lu I., Maltais LJ., McAndrews-Hill M., McClellan L., Miers DB., Miller LA., Ni L., Ormsby JE., Qi D., Reddy TB., Reed DJ., Richards-Smith B., Shaw DR., Sinclair R., Smith CL., Szauter P., Walker MB., Walton DO., Washburn LL., Witham IT., Zhu Y.,
Nucleic Acids Res. 2005

View Paper (PubMed)

The Mouse Genome Database: integration of and access to knowledge about the laboratory mouse.

Blake JA, Bult CJ, Eppig JT, Kadin JA, Richardson JE; The Mouse Genome Database Group
Nucleic Acids Res 2014

View Paper (PubMed)

The Mouse Genome Database: Genotypes, Phenotypes, and Models of Human Disease

Bult CJ, Eppig JT, Blake JA, Kadin JA, Richardson JE; the Mouse Genome Database Group
Nucleic Acids Res. 2013

View Paper (PubMed)

The Mouse Genome Database (MGD): comprehensive resource for genetics and genomics of the laboratory mouse

Eppig JT, Blake JA, Bult CJ, Kadin JA, Richardson JE; the Mouse Genome Database Group
Nucleic Acids Res. 2012

View Paper (PubMed)

A database for mouse development.

Ringwald M,Baldock R,Bard J,Kaufman M,Eppig JT,Richardson JE,Nadeau JH,Davidson D
Science 1994

View Paper (PubMed)

Mouse Genome Database (MGD)-2017: community knowledge resource for the laboratory mouse.

Blake JA, Eppig JT, Kadin JA, Richardson JE, Smith CL, Bult CJ, and the Mouse Genome Database Group.
Nucleic Acids Res. 2017

View Paper (PubMed) View Publication

Mouse Genome Informatics (MGI) Resource: Genetic, Genomic, and Biological Knowledgebase for the Laboratory Mouse.

Eppig JT
ILAR J. 2017

View Paper (PubMed) View Publication

Mouse Genome Informatics (MGI): Resources for Mining Mouse Genetic, Genomic, and Biological Data in Support of Primary and Translational Research.

Eppig JT, Smith CL, Blake JA, Ringwald M, Kadin JA, Richardson JE, Bult CJ.
Methods Mol Biol. 2017

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

Minimal Information for Mouse Phenotyping Procedures

Terminology Artifacts

Models and Formats

FASTA Sequence Format

Identifier Schemas

Research Resource Identifiers

Metrics

No metrics standards defined

Related Databases

Implementing Policies

Credit

Record Maintainer

This record is maintained by jberghout ORCID and ShawMGI

Funds

National Human Genome Research Institute (NHGRI), Bethesda, MD, USA (Government body)

Maintains

Mouse Genome Informatics (MGI) (Consortium)

Grant Number(s)

HG000330 (National Human Genome Research Institute (NHGRI), Bethesda, MD, USA)

Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource

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