mz Quantitative Markup Language

Abbreviation: mzQuantML

General Information

The mzQuantML standard format is intended to store the systematic description of workflows quantifying molecules (principally peptides and proteins) by mass spectrometry. A large number of different software packages are available that produce output in a variety of different formats. It is intended that mzQuantML will provide a common format for the export of identification results from any software package.

Homepage http://www.psidev.info/mzquantml

Developed in United Kingdom

Created in 2011

Taxonomic range

All

Knowledge Domains BETA

Subjects BETA

How to cite this record FAIRsharing.org: mzQuantML; mz Quantitative Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.fk6zhb; Last edited: Jan. 8, 2019, 1:30 p.m.; Last accessed: Mar 21 2019 5:44 a.m.

This record is maintained by HUPO PSI (HUPOPSI)

Record updated: March 15, 2018, 10:45 a.m. by The FAIRsharing Team.

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Before: The mzQuantML standard format is intended to store the systematic description of workflows quantifying molecules (principly peptides and proteins) by mass spectrometry. A large number of different software packages are available that produce output in a variety of different formats. It is intended that mzQuantML will provide a common format for the export of identification results from any software package. The format was originally developed under the name AnalysisXML as a format for several types of computational analyses performed over mass spectra in the proteomics context. It has been decided to split development into two formats: mzIdentML for peptide and protein identification and mzQuantML (described here), covering quantitative proteomic data derived from MS. The development of mzQuantML is driven by some general principles, specific use cases and the goal of supporting specific techniques, as listed below. These were discussed and agreed at the development meeting in Tubingen in July 2011.
After: The mzQuantML standard format is intended to store the systematic description of workflows quantifying molecules (principally peptides and proteins) by mass spectrometry. A large number of different software packages are available that produce output in a variety of different formats. It is intended that mzQuantML will provide a common format for the export of identification results from any software package.

In Collections

HUPO Proteomics Standards Initiative

Support

General

Mailing List	PSI Dev Mailing list
online documentation	User Guide

Additional Information

Contact

Andrew R Jones

Tools

No tools defined

Schemas

Name: mzQuantML
Version: 1.0.0

Download

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Mozilla Public License

Publications

The mzQuantML data standard for mass spectrometry-based quantitative studies in proteomics.

Walzer M,Qi D,Mayer G,Uszkoreit J,Eisenacher M,Sachsenberg T,Gonzalez-Galarza FF,Fan J,Bessant C,Deutsch EW,Reisinger F,Vizcaino JA,Medina-Aunon JA,Albar JP,Kohlbacher O,Jones AR
Mol Cell Proteomics 2013

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

MIAPE: Mass Spectrometry Quantification

Terminology Artifacts

HUPO PSI Mass Spectrometry Controlled Vocabulary

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Implementing Databases (1)

PRoteomics IDEntifications database
The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence.

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by HUPO PSI (HUPOPSI)

Funds

Biotechnology and Biological Sciences Research Council (BBSRC), UK (Government body)
ProteomeXchange (Consortium)
The Federal Ministry of Education and Research (BMBF) (Government body)

Maintains

HUPO-PSI initiative; Proteomics informatics working group (Consortium)
Quantitative Biology Center (QBiC), Tuebingen, Germany (University)

Grant Number(s)

0315450 (The Federal Ministry of Education and Research (BMBF))
BB/I00095X/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)

mz Quantitative Markup Language

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