Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'The FAIRsharing Team' at 14:09, 10 Mar 2021 (approved):
'user_defined_tags' has been modified:
Before:
After:
COVID-19
Added:
COVID-19
Removed:
'supportLinks' has been modified:
Before:
FAQ|https://www.ensembl.org/Help/Faq
blog|http://www.ensembl.info/
contact form|https://www.ensembl.org/info/about/contact/
email|helpdesk@ensembl.org
help|https://www.ensembl.org/info/
mailing list|http://lists.ensembl.org/mailman/listinfo/dev
online documentation|https://www.ensembl.org/info/website/tutorials/userdata.html
online documentation|https://www.ensembl.org/info/website/tutorials/gene_snps.html
online documentation|https://www.ensembl.org/info/website/tutorials/compara.html
online documentation|https://www.ensembl.org/info/website/tutorials/expression.html
online documentation|https://www.ensembl.org/info/website/tutorials/sequence.html
online documentation|https://www.ensembl.org/info/website/gallery.html
training|https://www.ebi.ac.uk/training/online/course/ensembl-browsing-chordate-genomes
training|https://www.ebi.ac.uk/training/online/course/ensembl-browser-webinar-series-2016
training|https://www.ebi.ac.uk/training/online/course/browsing-plant-and-pathogen-genomes-with-ensembl-genomes
training|https://www.ebi.ac.uk/training/online/course/ensembl-filmed-api-workshop
training|https://www.ensembl.org/info/website/tutorials/index.html
training|https://www.ebi.ac.uk/training/online/course/ensembl-genomes-non-chordates-quick-tour
training|https://www.ebi.ac.uk/training/online/course/ensembl-tools-webinar
training|https://www.ebi.ac.uk/training/online/course/ensembl-variant-effect-predictor-vep-webinar
twitter|@ensembl
After:
FAQ|https://www.ensembl.org/Help/Faq
blog|http://www.ensembl.info/
contact form|https://www.ensembl.org/info/about/contact/
email|helpdesk@ensembl.org
help|https://www.ensembl.org/info/
mailing list|http://lists.ensembl.org/mailman/listinfo/dev
online documentation|https://www.ensembl.org/info/website/tutorials/userdata.html
online documentation|https://www.ensembl.org/info/website/tutorials/gene_snps.html
online documentation|https://www.ensembl.org/info/website/tutorials/compara.html
online documentation|https://www.ensembl.org/info/website/tutorials/expression.html
online documentation|https://www.ensembl.org/info/website/tutorials/sequence.html
online documentation|https://www.ensembl.org/info/website/gallery.html
training|https://www.ebi.ac.uk/training/online/course/ensembl-browsing-chordate-genomes
training|https://www.ebi.ac.uk/training/online/course/ensembl-browser-webinar-series-2016
training|https://www.ebi.ac.uk/training/online/course/ensembl-filmed-api-workshop
training|https://www.ensembl.org/info/website/tutorials/index.html
training|https://www.ebi.ac.uk/training/online/course/ensembl-genomes-non-chordates-quick-tour
training|https://www.ebi.ac.uk/training/online/course/ensembl-tools-webinar
training|https://www.ebi.ac.uk/training/online/course/ensembl-variant-effect-predictor-vep-webinar
twitter|@ensembl
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training|https://www.ebi.ac.uk/training/online/course/browsing-plant-and-pathogen-genomes-with-ensembl-genomes
'standardsImplemented' has been modified:
Before:
Gene Transfer Format
FASTA Sequence Format
Generic Feature Format Version 3
Binary Alignment Map Format
Variant Call Format
Wiggle Track Format
Variant Effect Predictor data format
Feature Annotation Location Description Ontology
BEDgraph
proBed
After:
Gene Transfer Format
FASTA Sequence Format
Generic Feature Format Version 3
Binary Alignment Map Format
Variant Call Format
Wiggle Track Format
Variant Effect Predictor data format
Feature Annotation Location Description Ontology
BEDgraph
proBed
Bioschemas
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Bioschemas
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'tools' has been modified:
Before:
VEP||https://www.ensembl.org/info/docs/tools/vep/index.html
BioMart||https://www.ensembl.org/biomart/martview/
Tools: Complete List||https://www.ensembl.org/info/docs/tools/index.html
BLAST / BLAT||https://www.ensembl.org/Multi/Tools/Blast
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VEP||https://www.ensembl.org/info/docs/tools/vep/index.html
Tools: Complete List||https://www.ensembl.org/info/docs/tools/index.html
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BioMart||https://www.ensembl.org/biomart/martview/
BLAST / BLAT||https://www.ensembl.org/Multi/Tools/Blast
'dataProcesses' has been modified:
Before:
Download, data release, https://www.ensembl.org/downloads.html
Browse Species, data access, https://www.ensembl.org/info/about/species.html
Search, data access, https://www.ensembl.org
After:
Download, data release, https://www.ensembl.org/downloads.html
Browse Species, data access, https://www.ensembl.org/info/about/species.html
Search, data access, https://www.ensembl.org
Ensembl BioMart, data access, https://www.ensembl.org/biomart/martview/
BLAST / BLAT, data access, https://www.ensembl.org/Multi/Tools/Blast
Added:
Ensembl BioMart, data access, https://www.ensembl.org/biomart/martview/
BLAST / BLAT, data access, https://www.ensembl.org/Multi/Tools/Blast
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'ensembl_fair' at 15:20, 21 Jul 2020 (approved):
'publications' has been modified:
Before:
The Ensembl REST API: Ensembl Data for Any Language.|Yates A,Beal K,Keenan S,McLaren W,Pignatelli M,Ritchie GR,Ruffier M,Taylor K,Vullo A,Flicek P|Bioinformatics|2014
The Ensembl Variant Effect Predictor.|McLaren W,Gil L,Hunt SE,Riat HS,Ritchie GR,Thormann A,Flicek P,Cunningham F|Genome Biol|2016
Incorporating RNA-seq data into the zebrafish Ensembl genebuild.|Collins JE,White S,Searle SM,Stemple DL|Genome Res|2012
Ensembl comparative genomics resources.|Herrero J,Muffato M,Beal K,Fitzgerald S,Gordon L,Pignatelli M,Vilella AJ,Searle SM,Amode R,Brent S,Spooner W,Kulesha E,Yates A,Flicek P|Database (Oxford)|2016
The Ensembl Web site: mechanics of a genome browser.|Stalker J,Gibbins B,Meidl P,Smith J,Spooner W,Hotz HR,Cox AV|Genome Res|2004
The Ensembl core software libraries.|Stabenau A,McVicker G,Melsopp C,Proctor G,Clamp M,Birney E|Genome Res|2004
GENCODE: the reference human genome annotation for The ENCODE Project.|Harrow J,Frankish A,Gonzalez JM,Tapanari E,Diekhans M,Kokocinski F,Aken BL,Barrell D,Zadissa A,Searle S,Barnes I,Bignell A,Boychenko V,Hunt T,Kay M,Mukherjee G,Rajan J,Despacio-Reyes G,Saunders G,Steward C,Harte R,Lin M,Howald C,Tanzer A,Derrien T,Chrast J,Walters N,Balasubramanian S,Pei B,Tress M,Rodriguez JM,Ezkurdia I,van Baren J,Brent M,Haussler D,Kellis M,Valencia A,Reymond A,Gerstein M,Guigo R,Hubbard TJ|Genome Res|2012
Disease and phenotype data at Ensembl.|Spudich GM,Fernandez-Suarez XM|Curr Protoc Hum Genet|2011
Genome information resources - developments at Ensembl.|Hammond MP,Birney E|Trends Genet|2004
Ensembl BioMarts: a hub for data retrieval across taxonomic space.|Kinsella RJ,Kahari A,Haider S,Zamora J,Proctor G,Spudich G,Almeida-King J,Staines D,Derwent P,Kerhornou A,Kersey P,Flicek P|Database (Oxford)|2011
Ensembl 2015|Cunningham F et al.|Nucleic Acids Res.|2015
Ensembl 2006.|Birney E,Andrews D,Caccamo M,Chen Y,Clarke L,Coates G,Cox T,Cunningham F,Curwen V,Cutts T,Down T,Durbin R,Fernandez-Suarez XM,Flicek P,Graf S,Hammond M,Herrero J,Howe K,Iyer V,Jekosch K,Kahari A,Kasprzyk A,Keefe D,Kokocinski F,Kulesha E,London D,Longden I,Melsopp C,Meidl P,Overduin B,Parker A,Proctor G,Prlic A,Rae M,Rios D,Redmond S,Schuster M,Sealy I,Searle S,Severin J,Slater G,Smedley D,Smith J,Stabenau A,Stalker J,Trevanion S,Ureta-Vidal A,Vogel J,White S,Woodwark C,Hubbard TJ|Nucleic Acids Res|2005
The Ensembl REST API: Ensembl Data for Any Language.|Yates A,Beal K,Keenan S,McLaren W,Pignatelli M,Ritchie GR,Ruffier M,Taylor K,Vullo A,Flicek P|Bioinformatics|2014
Ensembl 2014.|Flicek P,Amode MR,Barrell D,Beal K,Billis K,Brent S,Carvalho-Silva D,Clapham P,Coates G,Fitzgerald S,Gil L,Giron CG,Gordon L,Hourlier T,Hunt S,Johnson N,Juettemann T,Kahari AK,Keenan S,Kulesha E,Martin FJ,Maurel T,McLaren WM,Murphy DN,Nag R,Overduin B,Pignatelli M,Pritchard B,Pritchard E,Riat HS,Ruffier M,Sheppard D,Taylor K,Thormann A,Trevanion SJ,Vullo A,Wilder SP,Wilson M,Zadissa A,Aken BL,Birney E,Cunningham F,Harrow J,Herrero J,Hubbard TJ,Kinsella R,Muffato M,Parker A,Spudich G,Yates A,Zerbino DR,Searle SM|Nucleic Acids Res|2013
Ensembl 2006.|Birney E,Andrews D,Caccamo M,Chen Y,Clarke L,Coates G,Cox T,Cunningham F,Curwen V,Cutts T,Down T,Durbin R,Fernandez-Suarez XM,Flicek P,Graf S,Hammond M,Herrero J,Howe K,Iyer V,Jekosch K,Kahari A,Kasprzyk A,Keefe D,Kokocinski F,Kulesha E,London D,Longden I,Melsopp C,Meidl P,Overduin B,Parker A,Proctor G,Prlic A,Rae M,Rios D,Redmond S,Schuster M,Sealy I,Searle S,Severin J,Slater G,Smedley D,Smith J,Stabenau A,Stalker J,Trevanion S,Ureta-Vidal A,Vogel J,White S,Woodwark C,Hubbard TJ|Nucleic Acids Res|2005
ncRNA orthologies in the vertebrate lineage.|Pignatelli M,Vilella AJ,Muffato M,Gordon L,White S,Flicek P,Herrero J|Database (Oxford)|2016
Ensembl comparative genomics resources.|Herrero J,Muffato M,Beal K,Fitzgerald S,Gordon L,Pignatelli M,Vilella AJ,Searle SM,Amode R,Brent S,Spooner W,Kulesha E,Yates A,Flicek P|Database (Oxford)|2016
The Ensembl computing architecture.|Cuff JA,Coates GM,Cutts TJ,Rae M|Genome Res|2004
Ensembl 2005.|Hubbard T,Andrews D,Caccamo M,Cameron G,Chen Y,Clamp M,Clarke L,Coates G,Cox T,Cunningham F,Curwen V,Cutts T,Down T,Durbin R,Fernandez-Suarez XM,Gilbert J,Hammond M,Herrero J,Hotz H,Howe K,Iyer V,Jekosch K,Kahari A,Kasprzyk A,Keefe D,Keenan S,Kokocinsci F,London D,Longden I,McVicker G,Melsopp C,Meidl P,Potter S,Proctor G,Rae M,Rios D,Schuster M,Searle S,Severin J,Slater G,Smedley D,Smith J,Spooner W,Stabenau A,Stalker J,Storey R,Trevanion S,Ureta-Vidal A,Vogel J,White S,Woodwark C,Birney E|Nucleic Acids Res|2004
ESTGenes: alternative splicing from ESTs in Ensembl.|Eyras E,Caccamo M,Curwen V,Clamp M|Genome Res|2004
The ensembl regulatory build.|Zerbino DR,Wilder SP,Johnson N,Juettemann T,Flicek PR|Genome Biol|2015
WiggleTools: parallel processing of large collections of genome-wide datasets for visualization and statistical analysis.|Zerbino DR,Johnson N,Juettemann T,Wilder SP,Flicek P|Bioinformatics|2013
The Ensembl gene annotation system.|Aken BL,Ayling S,Barrell D,Clarke L,Curwen V,Fairley S,Fernandez Banet J,Billis K,Garcia Giron C,Hourlier T,Howe K,Kahari A,Kokocinski F,Martin FJ,Murphy DN,Nag R,Ruffier M,Schuster M,Tang YA,Vogel JH,White S,Zadissa A,Flicek P,Searle SM|Database (Oxford)|2016
eHive: an artificial intelligence workflow system for genomic analysis.|Severin J,Beal K,Vilella AJ,Fitzgerald S,Schuster M,Gordon L,Ureta-Vidal A,Flicek P,Herrero J|BMC Bioinformatics|2010
Ensembl 2017.|Aken BL,Achuthan P,Akanni W,Amode MR,Bernsdorff F,Bhai J,Billis K,Carvalho-Silva D,Cummins C,Clapham P,Gil L,Giron CG,Gordon L,Hourlier T,Hunt SE,Janacek SH,Juettemann T,Keenan S,Laird MR,Lavidas I,Maurel T,McLaren W,Moore B,Murphy DN,Nag R,Newman V,Nuhn M,Ong CK,Parker A,Patricio M,Riat HS,Sheppard D,Sparrow H,Taylor K,Thormann A,Vullo A,Walts B,Wilder SP,Zadissa A,Kostadima M,Martin FJ,Muffato M,Perry E,Ruffier M,Staines DM,Trevanion SJ,Cunningham F,Yates A,Zerbino DR,Flicek P|Nucleic Acids Res|2016
TranscriptSNPView: a genome-wide catalog of mouse coding variation.|Cunningham F,Rios D,Griffiths M,Smith J,Ning Z,Cox T,Flicek P,Marin-Garcin P,Herrero J,Rogers J,van der Weyden L,Bradley A,Birney E,Adams DJ|Nat Genet|2006
Ensembl 2016.|Yates A,Akanni W,Amode MR,Barrell D,Billis K,Carvalho-Silva D,Cummins C,Clapham P,Fitzgerald S,Gil L,Giron CG,Gordon L,Hourlier T,Hunt SE,Janacek SH,Johnson N,Juettemann T,Keenan S,Lavidas I,Martin FJ,Maurel T,McLaren W,Murphy DN,Nag R,Nuhn M,Parker A,Patricio M,Pignatelli M,Rahtz M,Riat HS,Sheppard D,Taylor K,Thormann A,Vullo A,Wilder SP,Zadissa A,Birney E,Harrow J,Muffato M,Perry E,Ruffier M,Spudich G,Trevanion SJ,Cunningham F,Aken BL,Zerbino DR,Flicek P|Nucleic Acids Res|2015
Genome-wide nucleotide-level mammalian ancestor reconstruction.|Paten B,Herrero J,Fitzgerald S,Beal K,Flicek P,Holmes I,Birney E|Genome Res|2008
Ensembl 2008.|Flicek P,Aken BL,Beal K,Ballester B,Caccamo M,Chen Y,Clarke L,Coates G,Cunningham F,Cutts T,Down T,Dyer SC,Eyre T,Fitzgerald S,Fernandez-Banet J,Graf S,Haider S,Hammond M,Holland R,Howe KL,Howe K,Johnson N,Jenkinson A,Kahari A,Keefe D,Kokocinski F,Kulesha E,Lawson D,Longden I,Megy K,Meidl P,Overduin B,Parker A,Pritchard B,Prlic A,Rice S,Rios D,Schuster M,Sealy I,Slater G,Smedley D,Spudich G,Trevanion S,Vilella AJ,Vogel J,White S,Wood M,Birney E,Cox T,Curwen V,Durbin R,Fernandez-Suarez XM,Herrero J,Hubbard TJ,Kasprzyk A,Proctor G,Smith J,Ureta-Vidal A,Searle S|Nucleic Acids Res|2007
EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates.|Vilella AJ,Severin J,Ureta-Vidal A,Heng L,Durbin R,Birney E|Genome Res|2008
Ensembl 2002: accommodating comparative genomics.|Clamp M,Andrews D,Barker D,Bevan P,Cameron G,Chen Y,Clark L,Cox T,Cuff J,Curwen V,Down T,Durbin R,Eyras E,Gilbert J,Hammond M,Hubbard T,Kasprzyk A,Keefe D,Lehvaslaiho H,Iyer V,Melsopp C,Mongin E,Pettett R,Potter S,Rust A,Schmidt E,Searle S,Slater G,Smith J,Spooner W,Stabenau A,Stalker J,Stupka E,Ureta-Vidal A,Vastrik I,Birney E|Nucleic Acids Res|2003
Ensembl variation resources.|Chen Y,Cunningham F,Rios D,McLaren WM,Smith J,Pritchard B,Spudich GM,Brent S,Kulesha E,Marin-Garcia P,Smedley D,Birney E,Flicek P|BMC Genomics|2010
Ensembl 2002: accommodating comparative genomics.|Clamp M,Andrews D,Barker D,Bevan P,Cameron G,Chen Y,Clark L,Cox T,Cuff J,Curwen V,Down T,Durbin R,Eyras E,Gilbert J,Hammond M,Hubbard T,Kasprzyk A,Keefe D,Lehvaslaiho H,Iyer V,Melsopp C,Mongin E,Pettett R,Potter S,Rust A,Schmidt E,Searle S,Slater G,Smith J,Spooner W,Stabenau A,Stalker J,Stupka E,Ureta-Vidal A,Vastrik I,Birney E|Nucleic Acids Res|2003
The ensembl regulatory build.|Zerbino DR,Wilder SP,Johnson N,Juettemann T,Flicek PR|Genome Biol|2015
The Ensembl genome database project.|Hubbard T,Barker D,Birney E,Cameron G,Chen Y,Clark L,Cox T,Cuff J,Curwen V,Down T,Durbin R,Eyras E,Gilbert J,Hammond M,Huminiecki L,Kasprzyk A,Lehvaslaiho H,Lijnzaad P,Melsopp C,Mongin E,Pettett R,Pocock M,Potter S,Rust A,Schmidt E,Searle S,Slater G,Smith J,Spooner W,Stabenau A,Stalker J,Stupka E,Ureta-Vidal A,Vastrik I,Clamp M|Nucleic Acids Res|2001
Ensembl 2007.|Hubbard TJ,Aken BL,Beal K,Ballester B,Caccamo M,Chen Y,Clarke L,Coates G,Cunningham F,Cutts T,Down T,Dyer SC,Fitzgerald S,Fernandez-Banet J,Graf S,Haider S,Hammond M,Herrero J,Holland R,Howe K,Howe K,Johnson N,Kahari A,Keefe D,Kokocinski F,Kulesha E,Lawson D,Longden I,Melsopp C,Megy K,Meidl P,Ouverdin B,Parker A,Prlic A,Rice S,Rios D,Schuster M,Sealy I,Severin J,Slater G,Smedley D,Spudich G,Trevanion S,Vilella A,Vogel J,White S,Wood M,Cox T,Curwen V,Durbin R,Fernandez-Suarez XM,Flicek P,Kasprzyk A,Proctor G,Searle S,Smith J,Ureta-Vidal A,Birney E|Nucleic Acids Res|2006
A database and API for variation, dense genotyping and resequencing data.|Rios D,McLaren WM,Chen Y,Birney E,Stabenau A,Flicek P,Cunningham F|BMC Bioinformatics|2010
Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor.|McLaren W,Pritchard B,Rios D,Chen Y,Flicek P,Cunningham F|Bioinformatics|2010
Ensembl regulation resources.|Zerbino DR,Johnson N,Juetteman T,Sheppard D,Wilder SP,Lavidas I,Nuhn M,Perry E,Raffaillac-Desfosses Q,Sobral D,Keefe D,Graf S,Ahmed I,Kinsella R,Pritchard B,Brent S,Amode R,Parker A,Trevanion S,Birney E,Dunham I,Flicek P|Database (Oxford)|2016
Ensembl 2009.|Hubbard TJ,Aken BL,Ayling S,Ballester B,Beal K,Bragin E,Brent S,Chen Y,Clapham P,Clarke L,Coates G,Fairley S,Fitzgerald S,Fernandez-Banet J,Gordon L,Graf S,Haider S,Hammond M,Holland R,Howe K,Jenkinson A,Johnson N,Kahari A,Keefe D,Keenan S,Kinsella R,Kokocinski F,Kulesha E,Lawson D,Longden I,Megy K,Meidl P,Overduin B,Parker A,Pritchard B,Rios D,Schuster M,Slater G,Smedley D,Spooner W,Spudich G,Trevanion S,Vilella A,Vogel J,White S,Wilder S,Zadissa A,Birney E,Cunningham F,Curwen V,Durbin R,Fernandez-Suarez XM,Herrero J,Kasprzyk A,Proctor G,Smith J,Searle S,Flicek P|Nucleic Acids Res|2008
Touring Ensembl: a practical guide to genome browsing.|Spudich GM,Fernandez-Suarez XM|BMC Genomics|2010
Genome browsing with Ensembl: a practical overview.|Spudich G,Fernandez-Suarez XM,Birney E|Brief Funct Genomic Proteomic|2007
Ensembl's 10th year.|Flicek P,Aken BL,Ballester B,Beal K,Bragin E,Brent S,Chen Y,Clapham P,Coates G,Fairley S,Fitzgerald S,Fernandez-Banet J,Gordon L,Graf S,Haider S,Hammond M,Howe K,Jenkinson A,Johnson N,Kahari A,Keefe D,Keenan S,Kinsella R,Kokocinski F,Koscielny G,Kulesha E,Lawson D,Longden I,Massingham T,McLaren W,Megy K,Overduin B,Pritchard B,Rios D,Ruffier M,Schuster M,Slater G,Smedley D,Spudich G,Tang YA,Trevanion S,Vilella A,Vogel J,White S,Wilder SP,Zadissa A,Birney E,Cunningham F,Dunham I,Durbin R,Fernandez-Suarez XM,Herrero J,Hubbard TJ,Parker A,Proctor G,Smith J,Searle SM|Nucleic Acids Res|2009
Ensembl 2011.|Flicek P,Amode MR,Barrell D,Beal K,Brent S,Chen Y,Clapham P,Coates G,Fairley S,Fitzgerald S,Gordon L,Hendrix M,Hourlier T,Johnson N,Kahari A,Keefe D,Keenan S,Kinsella R,Kokocinski F,Kulesha E,Larsson P,Longden I,McLaren W,Overduin B,Pritchard B,Riat HS,Rios D,Ritchie GR,Ruffier M,Schuster M,Sobral D,Spudich G,Tang YA,Trevanion S,Vandrovcova J,Vilella AJ,White S,Wilder SP,Zadissa A,Zamora J,Aken BL,Birney E,Cunningham F,Dunham I,Durbin R,Fernandez-Suarez XM,Herrero J,Hubbard TJ,Parker A,Proctor G,Vogel J,Searle SM|Nucleic Acids Res|2010
Ensembl 2012.|Flicek P,Amode MR,Barrell D,Beal K,Brent S,Carvalho-Silva D,Clapham P,Coates G,Fairley S,Fitzgerald S,Gil L,Gordon L,Hendrix M,Hourlier T,Johnson N,Kahari AK,Keefe D,Keenan S,Kinsella R,Komorowska M,Koscielny G,Kulesha E,Larsson P,Longden I,McLaren W,Muffato M,Overduin B,Pignatelli M,Pritchard B,Riat HS,Ritchie GR,Ruffier M,Schuster M,Sobral D,Tang YA,Taylor K,Trevanion S,Vandrovcova J,White S,Wilson M,Wilder SP,Aken BL,Birney E,Cunningham F,Dunham I,Durbin R,Fernandez-Suarez XM,Harrow J,Herrero J,Hubbard TJ,Parker A,Proctor G,Spudich G,Vogel J,Yates A,Zadissa A,Searle SM|Nucleic Acids Res|2011
Ensembl 2013.|Flicek P,Ahmed I,Amode MR,Barrell D,Beal K,Brent S,Carvalho-Silva D,Clapham P,Coates G,Fairley S,Fitzgerald S,Gil L,Garcia-Giron C,Gordon L,Hourlier T,Hunt S,Juettemann T,Kahari AK,Keenan S,Komorowska M,Kulesha E,Longden I,Maurel T,McLaren WM,Muffato M,Nag R,Overduin B,Pignatelli M,Pritchard B,Pritchard E,Riat HS,Ritchie GR,Ruffier M,Schuster M,Sheppard D,Sobral D,Taylor K,Thormann A,Trevanion S,White S,Wilder SP,Aken BL,Birney E,Cunningham F,Dunham I,Harrow J,Herrero J,Hubbard TJ,Johnson N,Kinsella R,Parker A,Spudich G,Yates A,Zadissa A,Searle SM|Nucleic Acids Res|2012
The Ensembl analysis pipeline.|Potter SC,Clarke L,Curwen V,Keenan S,Mongin E,Searle SM,Stabenau A,Storey R,Clamp M|Genome Res|2004
The Ensembl automatic gene annotation system.|Curwen V,Eyras E,Andrews TD,Clarke L,Mongin E,Searle SM,Clamp M|Genome Res|2004
Ensembl 2019.|Cunningham F,Achuthan P,Akanni W,Allen J,Amode MR,Armean IM,Bennett R,Bhai J,Billis K,Boddu S,Cummins C,Davidson C,Dodiya KJ,Gall A,Giron CG,Gil L,Grego T,Haggerty L,Haskell E,Hourlier T,Izuogu OG,Janacek SH,Juettemann T,Kay M,Laird MR,Lavidas I,Liu Z,Loveland JE,Marugan JC,Maurel T,McMahon AC,Moore B,Morales J,Mudge JM,Nuhn M,Ogeh D,Parker A,Parton A,Patricio M,Abdul Salam AI,Schmitt BM,Schuilenburg H,Sheppard D,Sparrow H,Stapleton E,Szuba M,Taylor K,Threadgold G,Thormann A,Vullo A,Walts B,Winterbottom A,Zadissa A,Chakiachvili M,Frankish A,Hunt SE,Kostadima M,Langridge N,Martin FJ,Muffato M,Perry E,Ruffier M,Staines DM,Trevanion SJ,Aken BL,Yates AD,Zerbino DR,Flicek P|Nucleic Acids Res|2018
After:
The Ensembl REST API: Ensembl Data for Any Language.|Yates A,Beal K,Keenan S,McLaren W,Pignatelli M,Ritchie GR,Ruffier M,Taylor K,Vullo A,Flicek P|Bioinformatics|2014
The Ensembl Variant Effect Predictor.|McLaren W,Gil L,Hunt SE,Riat HS,Ritchie GR,Thormann A,Flicek P,Cunningham F|Genome Biol|2016
Incorporating RNA-seq data into the zebrafish Ensembl genebuild.|Collins JE,White S,Searle SM,Stemple DL|Genome Res|2012
Ensembl comparative genomics resources.|Herrero J,Muffato M,Beal K,Fitzgerald S,Gordon L,Pignatelli M,Vilella AJ,Searle SM,Amode R,Brent S,Spooner W,Kulesha E,Yates A,Flicek P|Database (Oxford)|2016
The Ensembl Web site: mechanics of a genome browser.|Stalker J,Gibbins B,Meidl P,Smith J,Spooner W,Hotz HR,Cox AV|Genome Res|2004
The Ensembl core software libraries.|Stabenau A,McVicker G,Melsopp C,Proctor G,Clamp M,Birney E|Genome Res|2004
GENCODE: the reference human genome annotation for The ENCODE Project.|Harrow J, et al.|Genome Res|2012
Disease and phenotype data at Ensembl.|Spudich GM,Fernandez-Suarez XM|Curr Protoc Hum Genet|2011
Genome information resources - developments at Ensembl.|Hammond MP,Birney E|Trends Genet|2004
Ensembl BioMarts: a hub for data retrieval across taxonomic space.|Kinsella RJ,Kahari A,Haider S,Zamora J,Proctor G,Spudich G,Almeida-King J,Staines D,Derwent P,Kerhornou A,Kersey P,Flicek P|Database (Oxford)|2011
Ensembl 2015|Cunningham F et al.|Nucleic Acids Res.|2015
Ensembl 2006.|Birney E et al.|Nucleic Acids Res|2005
The Ensembl REST API: Ensembl Data for Any Language.|Yates A,Beal K,Keenan S,McLaren W,Pignatelli M,Ritchie GR,Ruffier M,Taylor K,Vullo A,Flicek P|Bioinformatics|2014
Ensembl 2014.|Flicek P et al.|Nucleic Acids Res|2013
Ensembl 2006.|Birney E et al.|Nucleic Acids Res|2005
ncRNA orthologies in the vertebrate lineage.|Pignatelli M,Vilella AJ,Muffato M,Gordon L,White S,Flicek P,Herrero J|Database (Oxford)|2016
Ensembl comparative genomics resources.|Herrero J,Muffato M,Beal K,Fitzgerald S,Gordon L,Pignatelli M,Vilella AJ,Searle SM,Amode R,Brent S,Spooner W,Kulesha E,Yates A,Flicek P|Database (Oxford)|2016
The Ensembl computing architecture.|Cuff JA,Coates GM,Cutts TJ,Rae M|Genome Res|2004
Ensembl 2005.|Hubbard T et al.|Nucleic Acids Res|2004
ESTGenes: alternative splicing from ESTs in Ensembl.|Eyras E,Caccamo M,Curwen V,Clamp M|Genome Res|2004
The ensembl regulatory build.|Zerbino DR,Wilder SP,Johnson N,Juettemann T,Flicek PR|Genome Biol|2015
WiggleTools: parallel processing of large collections of genome-wide datasets for visualization and statistical analysis.|Zerbino DR,Johnson N,Juettemann T,Wilder SP,Flicek P|Bioinformatics|2013
Ensembl 2017.|Aken BL et al.|Nucleic Acids Res|2016
TranscriptSNPView: a genome-wide catalog of mouse coding variation.|Cunningham F,Rios D,Griffiths M,Smith J,Ning Z,Cox T,Flicek P,Marin-Garcin P,Herrero J,Rogers J,van der Weyden L,Bradley A,Birney E,Adams DJ|Nat Genet|2006
Ensembl 2016.|Yates A et al.|Nucleic Acids Res|2015
Genome-wide nucleotide-level mammalian ancestor reconstruction.|Paten B,Herrero J,Fitzgerald S,Beal K,Flicek P,Holmes I,Birney E|Genome Res|2008
Ensembl 2008.|Flicek P et al.|Nucleic Acids Res|2007
Ensembl 2002: accommodating comparative genomics.|Clamp M et al.|Nucleic Acids Res|2003
EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates.|Vilella AJ,Severin J,Ureta-Vidal A,Heng L,Durbin R,Birney E|Genome Res|2008
Ensembl 2002: accommodating comparative genomics.|Clamp M et al.|Nucleic Acids Res|2003
Ensembl variation resources.|Chen Y,Cunningham F,Rios D,McLaren WM,Smith J,Pritchard B,Spudich GM,Brent S,Kulesha E,Marin-Garcia P,Smedley D,Birney E,Flicek P|BMC Genomics|2010
The ensembl regulatory build.|Zerbino DR,Wilder SP,Johnson N,Juettemann T,Flicek PR|Genome Biol|2015
The Ensembl genome database project.|Hubbard T et al.|Nucleic Acids Res|2001
Ensembl 2007.|Hubbard TJ et al.|Nucleic Acids Res|2006
A database and API for variation, dense genotyping and resequencing data.|Rios D,McLaren WM,Chen Y,Birney E,Stabenau A,Flicek P,Cunningham F|BMC Bioinformatics|2010
Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor.|McLaren W,Pritchard B,Rios D,Chen Y,Flicek P,Cunningham F|Bioinformatics|2010
Ensembl 2009.|Hubbard TJ et al.|Nucleic Acids Res|2008
Ensembl's 10th year.|Flicek P et al.|Nucleic Acids Res|2009
The Ensembl gene annotation system.|Aken BL,Ayling S,Barrell D,Clarke L,Curwen V,Fairley S,Fernandez Banet J,Billis K,Garcia Giron C,Hourlier T,Howe K,Kahari A,Kokocinski F,Martin FJ,Murphy DN,Nag R,Ruffier M,Schuster M,Tang YA,Vogel JH,White S,Zadissa A,Flicek P,Searle SM|Database (Oxford)|2016
eHive: an artificial intelligence workflow system for genomic analysis.|Severin J,Beal K,Vilella AJ,Fitzgerald S,Schuster M,Gordon L,Ureta-Vidal A,Flicek P,Herrero J|BMC Bioinformatics|2010
Ensembl regulation resources.|Zerbino DR,Johnson N,Juetteman T,Sheppard D,Wilder SP,Lavidas I,Nuhn M,Perry E,Raffaillac-Desfosses Q,Sobral D,Keefe D,Graf S,Ahmed I,Kinsella R,Pritchard B,Brent S,Amode R,Parker A,Trevanion S,Birney E,Dunham I,Flicek P|Database (Oxford)|2016
Touring Ensembl: a practical guide to genome browsing.|Spudich GM,Fernandez-Suarez XM|BMC Genomics|2010
Genome browsing with Ensembl: a practical overview.|Spudich G,Fernandez-Suarez XM,Birney E|Brief Funct Genomic Proteomic|2007
Ensembl 2011.|Flicek P et al.|Nucleic Acids Res|2010
Ensembl 2012.|Flicek P et al.|Nucleic Acids Res|2011
Ensembl 2013.|Flicek P et al.|Nucleic Acids Res|2012
The Ensembl analysis pipeline.|Potter SC,Clarke L,Curwen V,Keenan S,Mongin E,Searle SM,Stabenau A,Storey R,Clamp M|Genome Res|2004
The Ensembl automatic gene annotation system.|Curwen V,Eyras E,Andrews TD,Clarke L,Mongin E,Searle SM,Clamp M|Genome Res|2004
Ensembl 2019.|Cunningham F et al.|Nucleic Acids Res|2018
Ensembl 2020.|Yates AD, et al|Nucleic Acids Res|2019
Added:
GENCODE: the reference human genome annotation for The ENCODE Project.|Harrow J, et al.|Genome Res|2012
Ensembl 2006.|Birney E et al.|Nucleic Acids Res|2005
Ensembl 2014.|Flicek P et al.|Nucleic Acids Res|2013
Ensembl 2006.|Birney E et al.|Nucleic Acids Res|2005
Ensembl 2005.|Hubbard T et al.|Nucleic Acids Res|2004
Ensembl 2017.|Aken BL et al.|Nucleic Acids Res|2016
Ensembl 2016.|Yates A et al.|Nucleic Acids Res|2015
Ensembl 2008.|Flicek P et al.|Nucleic Acids Res|2007
Ensembl 2002: accommodating comparative genomics.|Clamp M et al.|Nucleic Acids Res|2003
Ensembl 2002: accommodating comparative genomics.|Clamp M et al.|Nucleic Acids Res|2003
The Ensembl genome database project.|Hubbard T et al.|Nucleic Acids Res|2001
Ensembl 2007.|Hubbard TJ et al.|Nucleic Acids Res|2006
Ensembl 2009.|Hubbard TJ et al.|Nucleic Acids Res|2008
Ensembl's 10th year.|Flicek P et al.|Nucleic Acids Res|2009
Ensembl 2011.|Flicek P et al.|Nucleic Acids Res|2010
Ensembl 2012.|Flicek P et al.|Nucleic Acids Res|2011
Ensembl 2013.|Flicek P et al.|Nucleic Acids Res|2012
Ensembl 2019.|Cunningham F et al.|Nucleic Acids Res|2018
Ensembl 2020.|Yates AD, et al|Nucleic Acids Res|2019
Removed:
GENCODE: the reference human genome annotation for The ENCODE Project.|Harrow J,Frankish A,Gonzalez JM,Tapanari E,Diekhans M,Kokocinski F,Aken BL,Barrell D,Zadissa A,Searle S,Barnes I,Bignell A,Boychenko V,Hunt T,Kay M,Mukherjee G,Rajan J,Despacio-Reyes G,Saunders G,Steward C,Harte R,Lin M,Howald C,Tanzer A,Derrien T,Chrast J,Walters N,Balasubramanian S,Pei B,Tress M,Rodriguez JM,Ezkurdia I,van Baren J,Brent M,Haussler D,Kellis M,Valencia A,Reymond A,Gerstein M,Guigo R,Hubbard TJ|Genome Res|2012
Ensembl 2006.|Birney E,Andrews D,Caccamo M,Chen Y,Clarke L,Coates G,Cox T,Cunningham F,Curwen V,Cutts T,Down T,Durbin R,Fernandez-Suarez XM,Flicek P,Graf S,Hammond M,Herrero J,Howe K,Iyer V,Jekosch K,Kahari A,Kasprzyk A,Keefe D,Kokocinski F,Kulesha E,London D,Longden I,Melsopp C,Meidl P,Overduin B,Parker A,Proctor G,Prlic A,Rae M,Rios D,Redmond S,Schuster M,Sealy I,Searle S,Severin J,Slater G,Smedley D,Smith J,Stabenau A,Stalker J,Trevanion S,Ureta-Vidal A,Vogel J,White S,Woodwark C,Hubbard TJ|Nucleic Acids Res|2005
Ensembl 2014.|Flicek P,Amode MR,Barrell D,Beal K,Billis K,Brent S,Carvalho-Silva D,Clapham P,Coates G,Fitzgerald S,Gil L,Giron CG,Gordon L,Hourlier T,Hunt S,Johnson N,Juettemann T,Kahari AK,Keenan S,Kulesha E,Martin FJ,Maurel T,McLaren WM,Murphy DN,Nag R,Overduin B,Pignatelli M,Pritchard B,Pritchard E,Riat HS,Ruffier M,Sheppard D,Taylor K,Thormann A,Trevanion SJ,Vullo A,Wilder SP,Wilson M,Zadissa A,Aken BL,Birney E,Cunningham F,Harrow J,Herrero J,Hubbard TJ,Kinsella R,Muffato M,Parker A,Spudich G,Yates A,Zerbino DR,Searle SM|Nucleic Acids Res|2013
Ensembl 2006.|Birney E,Andrews D,Caccamo M,Chen Y,Clarke L,Coates G,Cox T,Cunningham F,Curwen V,Cutts T,Down T,Durbin R,Fernandez-Suarez XM,Flicek P,Graf S,Hammond M,Herrero J,Howe K,Iyer V,Jekosch K,Kahari A,Kasprzyk A,Keefe D,Kokocinski F,Kulesha E,London D,Longden I,Melsopp C,Meidl P,Overduin B,Parker A,Proctor G,Prlic A,Rae M,Rios D,Redmond S,Schuster M,Sealy I,Searle S,Severin J,Slater G,Smedley D,Smith J,Stabenau A,Stalker J,Trevanion S,Ureta-Vidal A,Vogel J,White S,Woodwark C,Hubbard TJ|Nucleic Acids Res|2005
Ensembl 2005.|Hubbard T,Andrews D,Caccamo M,Cameron G,Chen Y,Clamp M,Clarke L,Coates G,Cox T,Cunningham F,Curwen V,Cutts T,Down T,Durbin R,Fernandez-Suarez XM,Gilbert J,Hammond M,Herrero J,Hotz H,Howe K,Iyer V,Jekosch K,Kahari A,Kasprzyk A,Keefe D,Keenan S,Kokocinsci F,London D,Longden I,McVicker G,Melsopp C,Meidl P,Potter S,Proctor G,Rae M,Rios D,Schuster M,Searle S,Severin J,Slater G,Smedley D,Smith J,Spooner W,Stabenau A,Stalker J,Storey R,Trevanion S,Ureta-Vidal A,Vogel J,White S,Woodwark C,Birney E|Nucleic Acids Res|2004
Ensembl 2017.|Aken BL,Achuthan P,Akanni W,Amode MR,Bernsdorff F,Bhai J,Billis K,Carvalho-Silva D,Cummins C,Clapham P,Gil L,Giron CG,Gordon L,Hourlier T,Hunt SE,Janacek SH,Juettemann T,Keenan S,Laird MR,Lavidas I,Maurel T,McLaren W,Moore B,Murphy DN,Nag R,Newman V,Nuhn M,Ong CK,Parker A,Patricio M,Riat HS,Sheppard D,Sparrow H,Taylor K,Thormann A,Vullo A,Walts B,Wilder SP,Zadissa A,Kostadima M,Martin FJ,Muffato M,Perry E,Ruffier M,Staines DM,Trevanion SJ,Cunningham F,Yates A,Zerbino DR,Flicek P|Nucleic Acids Res|2016
Ensembl 2016.|Yates A,Akanni W,Amode MR,Barrell D,Billis K,Carvalho-Silva D,Cummins C,Clapham P,Fitzgerald S,Gil L,Giron CG,Gordon L,Hourlier T,Hunt SE,Janacek SH,Johnson N,Juettemann T,Keenan S,Lavidas I,Martin FJ,Maurel T,McLaren W,Murphy DN,Nag R,Nuhn M,Parker A,Patricio M,Pignatelli M,Rahtz M,Riat HS,Sheppard D,Taylor K,Thormann A,Vullo A,Wilder SP,Zadissa A,Birney E,Harrow J,Muffato M,Perry E,Ruffier M,Spudich G,Trevanion SJ,Cunningham F,Aken BL,Zerbino DR,Flicek P|Nucleic Acids Res|2015
Ensembl 2008.|Flicek P,Aken BL,Beal K,Ballester B,Caccamo M,Chen Y,Clarke L,Coates G,Cunningham F,Cutts T,Down T,Dyer SC,Eyre T,Fitzgerald S,Fernandez-Banet J,Graf S,Haider S,Hammond M,Holland R,Howe KL,Howe K,Johnson N,Jenkinson A,Kahari A,Keefe D,Kokocinski F,Kulesha E,Lawson D,Longden I,Megy K,Meidl P,Overduin B,Parker A,Pritchard B,Prlic A,Rice S,Rios D,Schuster M,Sealy I,Slater G,Smedley D,Spudich G,Trevanion S,Vilella AJ,Vogel J,White S,Wood M,Birney E,Cox T,Curwen V,Durbin R,Fernandez-Suarez XM,Herrero J,Hubbard TJ,Kasprzyk A,Proctor G,Smith J,Ureta-Vidal A,Searle S|Nucleic Acids Res|2007
Ensembl 2002: accommodating comparative genomics.|Clamp M,Andrews D,Barker D,Bevan P,Cameron G,Chen Y,Clark L,Cox T,Cuff J,Curwen V,Down T,Durbin R,Eyras E,Gilbert J,Hammond M,Hubbard T,Kasprzyk A,Keefe D,Lehvaslaiho H,Iyer V,Melsopp C,Mongin E,Pettett R,Potter S,Rust A,Schmidt E,Searle S,Slater G,Smith J,Spooner W,Stabenau A,Stalker J,Stupka E,Ureta-Vidal A,Vastrik I,Birney E|Nucleic Acids Res|2003
Ensembl 2002: accommodating comparative genomics.|Clamp M,Andrews D,Barker D,Bevan P,Cameron G,Chen Y,Clark L,Cox T,Cuff J,Curwen V,Down T,Durbin R,Eyras E,Gilbert J,Hammond M,Hubbard T,Kasprzyk A,Keefe D,Lehvaslaiho H,Iyer V,Melsopp C,Mongin E,Pettett R,Potter S,Rust A,Schmidt E,Searle S,Slater G,Smith J,Spooner W,Stabenau A,Stalker J,Stupka E,Ureta-Vidal A,Vastrik I,Birney E|Nucleic Acids Res|2003
The Ensembl genome database project.|Hubbard T,Barker D,Birney E,Cameron G,Chen Y,Clark L,Cox T,Cuff J,Curwen V,Down T,Durbin R,Eyras E,Gilbert J,Hammond M,Huminiecki L,Kasprzyk A,Lehvaslaiho H,Lijnzaad P,Melsopp C,Mongin E,Pettett R,Pocock M,Potter S,Rust A,Schmidt E,Searle S,Slater G,Smith J,Spooner W,Stabenau A,Stalker J,Stupka E,Ureta-Vidal A,Vastrik I,Clamp M|Nucleic Acids Res|2001
Ensembl 2007.|Hubbard TJ,Aken BL,Beal K,Ballester B,Caccamo M,Chen Y,Clarke L,Coates G,Cunningham F,Cutts T,Down T,Dyer SC,Fitzgerald S,Fernandez-Banet J,Graf S,Haider S,Hammond M,Herrero J,Holland R,Howe K,Howe K,Johnson N,Kahari A,Keefe D,Kokocinski F,Kulesha E,Lawson D,Longden I,Melsopp C,Megy K,Meidl P,Ouverdin B,Parker A,Prlic A,Rice S,Rios D,Schuster M,Sealy I,Severin J,Slater G,Smedley D,Spudich G,Trevanion S,Vilella A,Vogel J,White S,Wood M,Cox T,Curwen V,Durbin R,Fernandez-Suarez XM,Flicek P,Kasprzyk A,Proctor G,Searle S,Smith J,Ureta-Vidal A,Birney E|Nucleic Acids Res|2006
Ensembl 2009.|Hubbard TJ,Aken BL,Ayling S,Ballester B,Beal K,Bragin E,Brent S,Chen Y,Clapham P,Clarke L,Coates G,Fairley S,Fitzgerald S,Fernandez-Banet J,Gordon L,Graf S,Haider S,Hammond M,Holland R,Howe K,Jenkinson A,Johnson N,Kahari A,Keefe D,Keenan S,Kinsella R,Kokocinski F,Kulesha E,Lawson D,Longden I,Megy K,Meidl P,Overduin B,Parker A,Pritchard B,Rios D,Schuster M,Slater G,Smedley D,Spooner W,Spudich G,Trevanion S,Vilella A,Vogel J,White S,Wilder S,Zadissa A,Birney E,Cunningham F,Curwen V,Durbin R,Fernandez-Suarez XM,Herrero J,Kasprzyk A,Proctor G,Smith J,Searle S,Flicek P|Nucleic Acids Res|2008
Ensembl's 10th year.|Flicek P,Aken BL,Ballester B,Beal K,Bragin E,Brent S,Chen Y,Clapham P,Coates G,Fairley S,Fitzgerald S,Fernandez-Banet J,Gordon L,Graf S,Haider S,Hammond M,Howe K,Jenkinson A,Johnson N,Kahari A,Keefe D,Keenan S,Kinsella R,Kokocinski F,Koscielny G,Kulesha E,Lawson D,Longden I,Massingham T,McLaren W,Megy K,Overduin B,Pritchard B,Rios D,Ruffier M,Schuster M,Slater G,Smedley D,Spudich G,Tang YA,Trevanion S,Vilella A,Vogel J,White S,Wilder SP,Zadissa A,Birney E,Cunningham F,Dunham I,Durbin R,Fernandez-Suarez XM,Herrero J,Hubbard TJ,Parker A,Proctor G,Smith J,Searle SM|Nucleic Acids Res|2009
Ensembl 2011.|Flicek P,Amode MR,Barrell D,Beal K,Brent S,Chen Y,Clapham P,Coates G,Fairley S,Fitzgerald S,Gordon L,Hendrix M,Hourlier T,Johnson N,Kahari A,Keefe D,Keenan S,Kinsella R,Kokocinski F,Kulesha E,Larsson P,Longden I,McLaren W,Overduin B,Pritchard B,Riat HS,Rios D,Ritchie GR,Ruffier M,Schuster M,Sobral D,Spudich G,Tang YA,Trevanion S,Vandrovcova J,Vilella AJ,White S,Wilder SP,Zadissa A,Zamora J,Aken BL,Birney E,Cunningham F,Dunham I,Durbin R,Fernandez-Suarez XM,Herrero J,Hubbard TJ,Parker A,Proctor G,Vogel J,Searle SM|Nucleic Acids Res|2010
Ensembl 2012.|Flicek P,Amode MR,Barrell D,Beal K,Brent S,Carvalho-Silva D,Clapham P,Coates G,Fairley S,Fitzgerald S,Gil L,Gordon L,Hendrix M,Hourlier T,Johnson N,Kahari AK,Keefe D,Keenan S,Kinsella R,Komorowska M,Koscielny G,Kulesha E,Larsson P,Longden I,McLaren W,Muffato M,Overduin B,Pignatelli M,Pritchard B,Riat HS,Ritchie GR,Ruffier M,Schuster M,Sobral D,Tang YA,Taylor K,Trevanion S,Vandrovcova J,White S,Wilson M,Wilder SP,Aken BL,Birney E,Cunningham F,Dunham I,Durbin R,Fernandez-Suarez XM,Harrow J,Herrero J,Hubbard TJ,Parker A,Proctor G,Spudich G,Vogel J,Yates A,Zadissa A,Searle SM|Nucleic Acids Res|2011
Ensembl 2013.|Flicek P,Ahmed I,Amode MR,Barrell D,Beal K,Brent S,Carvalho-Silva D,Clapham P,Coates G,Fairley S,Fitzgerald S,Gil L,Garcia-Giron C,Gordon L,Hourlier T,Hunt S,Juettemann T,Kahari AK,Keenan S,Komorowska M,Kulesha E,Longden I,Maurel T,McLaren WM,Muffato M,Nag R,Overduin B,Pignatelli M,Pritchard B,Pritchard E,Riat HS,Ritchie GR,Ruffier M,Schuster M,Sheppard D,Sobral D,Taylor K,Thormann A,Trevanion S,White S,Wilder SP,Aken BL,Birney E,Cunningham F,Dunham I,Harrow J,Herrero J,Hubbard TJ,Johnson N,Kinsella R,Parker A,Spudich G,Yates A,Zadissa A,Searle SM|Nucleic Acids Res|2012
Ensembl 2019.|Cunningham F,Achuthan P,Akanni W,Allen J,Amode MR,Armean IM,Bennett R,Bhai J,Billis K,Boddu S,Cummins C,Davidson C,Dodiya KJ,Gall A,Giron CG,Gil L,Grego T,Haggerty L,Haskell E,Hourlier T,Izuogu OG,Janacek SH,Juettemann T,Kay M,Laird MR,Lavidas I,Liu Z,Loveland JE,Marugan JC,Maurel T,McMahon AC,Moore B,Morales J,Mudge JM,Nuhn M,Ogeh D,Parker A,Parton A,Patricio M,Abdul Salam AI,Schmitt BM,Schuilenburg H,Sheppard D,Sparrow H,Stapleton E,Szuba M,Taylor K,Threadgold G,Thormann A,Vullo A,Walts B,Winterbottom A,Zadissa A,Chakiachvili M,Frankish A,Hunt SE,Kostadima M,Langridge N,Martin FJ,Muffato M,Perry E,Ruffier M,Staines DM,Trevanion SJ,Aken BL,Yates AD,Zerbino DR,Flicek P|Nucleic Acids Res|2018
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'The FAIRsharing Team' at 14:59, 14 Feb 2020 (approved):
'licences' has been modified:
Before:
Apache License 2.0|http://www.apache.org/licenses/LICENSE-2.0|Software
EBI Terms of Use|http://www.ebi.ac.uk/about/terms-of-use|Data
After:
EBI Terms of Use|http://www.ebi.ac.uk/about/terms-of-use|Data
Apache License 2.0|http://www.apache.org/licenses/LICENSE-2.0|Software
Legal disclaimer|https://www.ensembl.org/info/about/legal/disclaimer.html|Data
Added:
Legal disclaimer|https://www.ensembl.org/info/about/legal/disclaimer.html|Data
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'The FAIRsharing Team' at 13:41, 12 Feb 2020 (approved):
'organizations' has been modified:
Before:
The Wellcome Trust, UK|https://wellcome.ac.uk/|Funds
European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Funds
After:
The Wellcome Trust, UK|https://wellcome.ac.uk/|Funds
European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Funds
European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
The Wellcome Trust Sanger Institute, The Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK|http://www.sanger.ac.uk|Maintains
Added:
European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
The Wellcome Trust Sanger Institute, The Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK|http://www.sanger.ac.uk|Maintains
Removed:
'supportLinks' has been modified:
Before:
FAQ|http://www.ensembl.org/Help/Faq
blog|http://www.ensembl.info
contact form|http://www.ensembl.org/Help/Contact
email|helpdesk@ensembl.org
mailing list|http://lists.ensembl.org/mailman/listinfo/dev
online documentation|http://www.ensembl.org/info/index.html
training|http://www.ebi.ac.uk/training/online/course/ensembl-browsing-chordate-genomes
training|http://www.ebi.ac.uk/training/online/course/ensembl-filmed-api-workshop
training|http://www.ebi.ac.uk/training/online/course/ensembl-filmed-browser-workshop
training|http://www.ebi.ac.uk/training/online/course/ensembl-quick-tour
training|http://www.ebi.ac.uk/training/online/course/browsing-plant-and-pathogen-genomes-with-ensembl-genomes
training|http://www.ensembl.org/info/website/tutorials/index.html
training|http://www.ebi.ac.uk/training/online/course/ensembl-browser-webinar-series-2016
training|http://www.ebi.ac.uk/training/online/course/ensembl-genomes-non-chordates-quick-tour
training|http://www.ebi.ac.uk/training/online/course/ensembl-tools-webinar
training|http://www.ebi.ac.uk/training/online/course/ensembl-variant-effect-predictor-vep-webinar
twitter|@ensembl
After:
FAQ|https://www.ensembl.org/Help/Faq
blog|http://www.ensembl.info/
contact form|https://www.ensembl.org/info/about/contact/
email|helpdesk@ensembl.org
help|https://www.ensembl.org/info/
mailing list|http://lists.ensembl.org/mailman/listinfo/dev
online documentation|https://www.ensembl.org/info/website/tutorials/userdata.html
online documentation|https://www.ensembl.org/info/website/tutorials/gene_snps.html
online documentation|https://www.ensembl.org/info/website/tutorials/compara.html
online documentation|https://www.ensembl.org/info/website/tutorials/expression.html
online documentation|https://www.ensembl.org/info/website/tutorials/sequence.html
online documentation|https://www.ensembl.org/info/website/gallery.html
training|https://www.ensembl.org/info/website/tutorials/index.html
training|https://www.ebi.ac.uk/training/online/course/ensembl-genomes-non-chordates-quick-tour
training|https://www.ebi.ac.uk/training/online/course/ensembl-tools-webinar
training|https://www.ebi.ac.uk/training/online/course/ensembl-variant-effect-predictor-vep-webinar
training|https://www.ebi.ac.uk/training/online/course/ensembl-filmed-api-workshop
training|https://www.ebi.ac.uk/training/online/course/ensembl-browser-webinar-series-2016
training|https://www.ebi.ac.uk/training/online/course/ensembl-browsing-chordate-genomes
training|https://www.ebi.ac.uk/training/online/course/browsing-plant-and-pathogen-genomes-with-ensembl-genomes
twitter|@ensembl
Added:
FAQ|https://www.ensembl.org/Help/Faq
blog|http://www.ensembl.info/
contact form|https://www.ensembl.org/info/about/contact/
help|https://www.ensembl.org/info/
online documentation|https://www.ensembl.org/info/website/tutorials/userdata.html
online documentation|https://www.ensembl.org/info/website/tutorials/gene_snps.html
online documentation|https://www.ensembl.org/info/website/tutorials/compara.html
online documentation|https://www.ensembl.org/info/website/tutorials/expression.html
online documentation|https://www.ensembl.org/info/website/tutorials/sequence.html
online documentation|https://www.ensembl.org/info/website/gallery.html
training|https://www.ensembl.org/info/website/tutorials/index.html
training|https://www.ebi.ac.uk/training/online/course/ensembl-genomes-non-chordates-quick-tour
training|https://www.ebi.ac.uk/training/online/course/ensembl-tools-webinar
training|https://www.ebi.ac.uk/training/online/course/ensembl-variant-effect-predictor-vep-webinar
training|https://www.ebi.ac.uk/training/online/course/ensembl-filmed-api-workshop
training|https://www.ebi.ac.uk/training/online/course/ensembl-browser-webinar-series-2016
training|https://www.ebi.ac.uk/training/online/course/ensembl-browsing-chordate-genomes
training|https://www.ebi.ac.uk/training/online/course/browsing-plant-and-pathogen-genomes-with-ensembl-genomes
Removed:
FAQ|http://www.ensembl.org/Help/Faq
blog|http://www.ensembl.info
contact form|http://www.ensembl.org/Help/Contact
online documentation|http://www.ensembl.org/info/index.html
training|http://www.ebi.ac.uk/training/online/course/ensembl-browsing-chordate-genomes
training|http://www.ebi.ac.uk/training/online/course/ensembl-filmed-api-workshop
training|http://www.ebi.ac.uk/training/online/course/ensembl-filmed-browser-workshop
training|http://www.ebi.ac.uk/training/online/course/ensembl-quick-tour
training|http://www.ebi.ac.uk/training/online/course/browsing-plant-and-pathogen-genomes-with-ensembl-genomes
training|http://www.ensembl.org/info/website/tutorials/index.html
training|http://www.ebi.ac.uk/training/online/course/ensembl-browser-webinar-series-2016
training|http://www.ebi.ac.uk/training/online/course/ensembl-genomes-non-chordates-quick-tour
training|http://www.ebi.ac.uk/training/online/course/ensembl-tools-webinar
training|http://www.ebi.ac.uk/training/online/course/ensembl-variant-effect-predictor-vep-webinar
'description' has been modified:
Before: The Ensembl project is based at the European Molecular Biology Laboratory's European Bioinformatics Institute (EMBL-EBI). It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries.
After: Ensembl creates, integrates and distributes reference datasets and analysis tools that enable genomics. Ensembl is a genome browser that supports research in comparative genomics, evolution, sequence variation and transcriptional regulation. Ensembl annotate genes, computes multiple alignments, predicts regulatory function and collects disease data.
'countries' has been modified:
Before:
European Union
United Kingdom
After:
Austria
Belgium
Croatia
Czech Republic
Denmark
Finland
France
Germany
Greece
Hungary
Iceland
Israel
Italy
Lithuania
Luxembourg
Malta
Montenegro
Netherlands
Norway
Portugal
Republic of Ireland
Slovakia
Spain
Sweden
Switzerland
United Kingdom
Added:
Austria
Belgium
Croatia
Czech Republic
Denmark
Finland
France
Germany
Greece
Hungary
Iceland
Israel
Italy
Lithuania
Luxembourg
Malta
Montenegro
Netherlands
Norway
Portugal
Republic of Ireland
Slovakia
Spain
Sweden
Switzerland
Removed:
European Union
'licences' has been modified:
Before:
Apache License 2.0|http://www.apache.org/licenses/LICENSE-2.0|Software
After:
Apache License 2.0|http://www.apache.org/licenses/LICENSE-2.0|Software
EBI Terms of Use|http://www.ebi.ac.uk/about/terms-of-use|Data
Added:
EBI Terms of Use|http://www.ebi.ac.uk/about/terms-of-use|Data
Removed:
'onto_disciplines' has been modified:
Before:
Biomedical Science
Life Science
After:
Biomedical Science
Comparative Genomics
Genomics
Added:
Comparative Genomics
Genomics
Removed:
Life Science
'onto_domains' has been modified:
Before:
Gene prediction
Genome alignment
Genome annotation
Genome assembly
Genome visualisation
genome
reference_genome
After:
Gene prediction
Genetic map
Genome alignment
Genome annotation
Genome assembly
Genome visualisation
gene
genome
reference_genome
Added:
Genetic map
gene
Removed:
'dataProcesses' has been modified:
Before:
FTP
Blast
After:
Download
Browse Species
Search
Added:
Download
Browse Species
Search
Removed:
FTP
Blast
'publications' has been modified:
Before:
The Ensembl genome database project.|Hubbard T,Barker D,Birney E,Cameron G,Chen Y,Clark L,Cox T,Cuff J,Curwen V,Down T,Durbin R,Eyras E,Gilbert J,Hammond M,Huminiecki L,Kasprzyk A,Lehvaslaiho H,Lijnzaad P,Melsopp C,Mongin E,Pettett R,Pocock M,Potter S,Rust A,Schmidt E,Searle S,Slater G,Smith J,Spooner W,Stabenau A,Stalker J,Stupka E,Ureta-Vidal A,Vastrik I,Clamp M|Nucleic Acids Res|2001
The Ensembl REST API: Ensembl Data for Any Language.|Yates A,Beal K,Keenan S,McLaren W,Pignatelli M,Ritchie GR,Ruffier M,Taylor K,Vullo A,Flicek P|Bioinformatics|2014
The Ensembl Variant Effect Predictor.|McLaren W,Gil L,Hunt SE,Riat HS,Ritchie GR,Thormann A,Flicek P,Cunningham F|Genome Biol|2016
Incorporating RNA-seq data into the zebrafish Ensembl genebuild.|Collins JE,White S,Searle SM,Stemple DL|Genome Res|2012
Ensembl comparative genomics resources.|Herrero J,Muffato M,Beal K,Fitzgerald S,Gordon L,Pignatelli M,Vilella AJ,Searle SM,Amode R,Brent S,Spooner W,Kulesha E,Yates A,Flicek P|Database (Oxford)|2016
The Ensembl Web site: mechanics of a genome browser.|Stalker J,Gibbins B,Meidl P,Smith J,Spooner W,Hotz HR,Cox AV|Genome Res|2004
The Ensembl core software libraries.|Stabenau A,McVicker G,Melsopp C,Proctor G,Clamp M,Birney E|Genome Res|2004
GENCODE: the reference human genome annotation for The ENCODE Project.|Harrow J,Frankish A,Gonzalez JM,Tapanari E,Diekhans M,Kokocinski F,Aken BL,Barrell D,Zadissa A,Searle S,Barnes I,Bignell A,Boychenko V,Hunt T,Kay M,Mukherjee G,Rajan J,Despacio-Reyes G,Saunders G,Steward C,Harte R,Lin M,Howald C,Tanzer A,Derrien T,Chrast J,Walters N,Balasubramanian S,Pei B,Tress M,Rodriguez JM,Ezkurdia I,van Baren J,Brent M,Haussler D,Kellis M,Valencia A,Reymond A,Gerstein M,Guigo R,Hubbard TJ|Genome Res|2012
Disease and phenotype data at Ensembl.|Spudich GM,Fernandez-Suarez XM|Curr Protoc Hum Genet|2011
Genome information resources - developments at Ensembl.|Hammond MP,Birney E|Trends Genet|2004
Ensembl BioMarts: a hub for data retrieval across taxonomic space.|Kinsella RJ,Kahari A,Haider S,Zamora J,Proctor G,Spudich G,Almeida-King J,Staines D,Derwent P,Kerhornou A,Kersey P,Flicek P|Database (Oxford)|2011
Ensembl 2015|Cunningham F et al.|Nucleic Acids Res.|2015
Ensembl 2007.|Hubbard TJ,Aken BL,Beal K,Ballester B,Caccamo M,Chen Y,Clarke L,Coates G,Cunningham F,Cutts T,Down T,Dyer SC,Fitzgerald S,Fernandez-Banet J,Graf S,Haider S,Hammond M,Herrero J,Holland R,Howe K,Howe K,Johnson N,Kahari A,Keefe D,Kokocinski F,Kulesha E,Lawson D,Longden I,Melsopp C,Megy K,Meidl P,Ouverdin B,Parker A,Prlic A,Rice S,Rios D,Schuster M,Sealy I,Severin J,Slater G,Smedley D,Spudich G,Trevanion S,Vilella A,Vogel J,White S,Wood M,Cox T,Curwen V,Durbin R,Fernandez-Suarez XM,Flicek P,Kasprzyk A,Proctor G,Searle S,Smith J,Ureta-Vidal A,Birney E|Nucleic Acids Res|2006
Ensembl 2006.|Birney E,Andrews D,Caccamo M,Chen Y,Clarke L,Coates G,Cox T,Cunningham F,Curwen V,Cutts T,Down T,Durbin R,Fernandez-Suarez XM,Flicek P,Graf S,Hammond M,Herrero J,Howe K,Iyer V,Jekosch K,Kahari A,Kasprzyk A,Keefe D,Kokocinski F,Kulesha E,London D,Longden I,Melsopp C,Meidl P,Overduin B,Parker A,Proctor G,Prlic A,Rae M,Rios D,Redmond S,Schuster M,Sealy I,Searle S,Severin J,Slater G,Smedley D,Smith J,Stabenau A,Stalker J,Trevanion S,Ureta-Vidal A,Vogel J,White S,Woodwark C,Hubbard TJ|Nucleic Acids Res|2005
The Ensembl REST API: Ensembl Data for Any Language.|Yates A,Beal K,Keenan S,McLaren W,Pignatelli M,Ritchie GR,Ruffier M,Taylor K,Vullo A,Flicek P|Bioinformatics|2014
The Ensembl gene annotation system.|Aken BL,Ayling S,Barrell D,Clarke L,Curwen V,Fairley S,Fernandez Banet J,Billis K,Garcia Giron C,Hourlier T,Howe K,Kahari A,Kokocinski F,Martin FJ,Murphy DN,Nag R,Ruffier M,Schuster M,Tang YA,Vogel JH,White S,Zadissa A,Flicek P,Searle SM|Database (Oxford)|2016
Ensembl 2014.|Flicek P,Amode MR,Barrell D,Beal K,Billis K,Brent S,Carvalho-Silva D,Clapham P,Coates G,Fitzgerald S,Gil L,Giron CG,Gordon L,Hourlier T,Hunt S,Johnson N,Juettemann T,Kahari AK,Keenan S,Kulesha E,Martin FJ,Maurel T,McLaren WM,Murphy DN,Nag R,Overduin B,Pignatelli M,Pritchard B,Pritchard E,Riat HS,Ruffier M,Sheppard D,Taylor K,Thormann A,Trevanion SJ,Vullo A,Wilder SP,Wilson M,Zadissa A,Aken BL,Birney E,Cunningham F,Harrow J,Herrero J,Hubbard TJ,Kinsella R,Muffato M,Parker A,Spudich G,Yates A,Zerbino DR,Searle SM|Nucleic Acids Res|2013
Ensembl 2006.|Birney E,Andrews D,Caccamo M,Chen Y,Clarke L,Coates G,Cox T,Cunningham F,Curwen V,Cutts T,Down T,Durbin R,Fernandez-Suarez XM,Flicek P,Graf S,Hammond M,Herrero J,Howe K,Iyer V,Jekosch K,Kahari A,Kasprzyk A,Keefe D,Kokocinski F,Kulesha E,London D,Longden I,Melsopp C,Meidl P,Overduin B,Parker A,Proctor G,Prlic A,Rae M,Rios D,Redmond S,Schuster M,Sealy I,Searle S,Severin J,Slater G,Smedley D,Smith J,Stabenau A,Stalker J,Trevanion S,Ureta-Vidal A,Vogel J,White S,Woodwark C,Hubbard TJ|Nucleic Acids Res|2005
ncRNA orthologies in the vertebrate lineage.|Pignatelli M,Vilella AJ,Muffato M,Gordon L,White S,Flicek P,Herrero J|Database (Oxford)|2016
Ensembl comparative genomics resources.|Herrero J,Muffato M,Beal K,Fitzgerald S,Gordon L,Pignatelli M,Vilella AJ,Searle SM,Amode R,Brent S,Spooner W,Kulesha E,Yates A,Flicek P|Database (Oxford)|2016
The Ensembl computing architecture.|Cuff JA,Coates GM,Cutts TJ,Rae M|Genome Res|2004
Ensembl 2005.|Hubbard T,Andrews D,Caccamo M,Cameron G,Chen Y,Clamp M,Clarke L,Coates G,Cox T,Cunningham F,Curwen V,Cutts T,Down T,Durbin R,Fernandez-Suarez XM,Gilbert J,Hammond M,Herrero J,Hotz H,Howe K,Iyer V,Jekosch K,Kahari A,Kasprzyk A,Keefe D,Keenan S,Kokocinsci F,London D,Longden I,McVicker G,Melsopp C,Meidl P,Potter S,Proctor G,Rae M,Rios D,Schuster M,Searle S,Severin J,Slater G,Smedley D,Smith J,Spooner W,Stabenau A,Stalker J,Storey R,Trevanion S,Ureta-Vidal A,Vogel J,White S,Woodwark C,Birney E|Nucleic Acids Res|2004
ESTGenes: alternative splicing from ESTs in Ensembl.|Eyras E,Caccamo M,Curwen V,Clamp M|Genome Res|2004
WiggleTools: parallel processing of large collections of genome-wide datasets for visualization and statistical analysis.|Zerbino DR,Johnson N,Juettemann T,Wilder SP,Flicek P|Bioinformatics|2013
Ensembl 2017.|Aken BL,Achuthan P,Akanni W,Amode MR,Bernsdorff F,Bhai J,Billis K,Carvalho-Silva D,Cummins C,Clapham P,Gil L,Giron CG,Gordon L,Hourlier T,Hunt SE,Janacek SH,Juettemann T,Keenan S,Laird MR,Lavidas I,Maurel T,McLaren W,Moore B,Murphy DN,Nag R,Newman V,Nuhn M,Ong CK,Parker A,Patricio M,Riat HS,Sheppard D,Sparrow H,Taylor K,Thormann A,Vullo A,Walts B,Wilder SP,Zadissa A,Kostadima M,Martin FJ,Muffato M,Perry E,Ruffier M,Staines DM,Trevanion SJ,Cunningham F,Yates A,Zerbino DR,Flicek P|Nucleic Acids Res|2016
TranscriptSNPView: a genome-wide catalog of mouse coding variation.|Cunningham F,Rios D,Griffiths M,Smith J,Ning Z,Cox T,Flicek P,Marin-Garcin P,Herrero J,Rogers J,van der Weyden L,Bradley A,Birney E,Adams DJ|Nat Genet|2006
Ensembl 2016.|Yates A,Akanni W,Amode MR,Barrell D,Billis K,Carvalho-Silva D,Cummins C,Clapham P,Fitzgerald S,Gil L,Giron CG,Gordon L,Hourlier T,Hunt SE,Janacek SH,Johnson N,Juettemann T,Keenan S,Lavidas I,Martin FJ,Maurel T,McLaren W,Murphy DN,Nag R,Nuhn M,Parker A,Patricio M,Pignatelli M,Rahtz M,Riat HS,Sheppard D,Taylor K,Thormann A,Vullo A,Wilder SP,Zadissa A,Birney E,Harrow J,Muffato M,Perry E,Ruffier M,Spudich G,Trevanion SJ,Cunningham F,Aken BL,Zerbino DR,Flicek P|Nucleic Acids Res|2015
Genome-wide nucleotide-level mammalian ancestor reconstruction.|Paten B,Herrero J,Fitzgerald S,Beal K,Flicek P,Holmes I,Birney E|Genome Res|2008
The ensembl regulatory build.|Zerbino DR,Wilder SP,Johnson N,Juettemann T,Flicek PR|Genome Biol|2015
eHive: an artificial intelligence workflow system for genomic analysis.|Severin J,Beal K,Vilella AJ,Fitzgerald S,Schuster M,Gordon L,Ureta-Vidal A,Flicek P,Herrero J|BMC Bioinformatics|2010
A database and API for variation, dense genotyping and resequencing data.|Rios D,McLaren WM,Chen Y,Birney E,Stabenau A,Flicek P,Cunningham F|BMC Bioinformatics|2010
Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor.|McLaren W,Pritchard B,Rios D,Chen Y,Flicek P,Cunningham F|Bioinformatics|2010
Ensembl regulation resources.|Zerbino DR,Johnson N,Juetteman T,Sheppard D,Wilder SP,Lavidas I,Nuhn M,Perry E,Raffaillac-Desfosses Q,Sobral D,Keefe D,Graf S,Ahmed I,Kinsella R,Pritchard B,Brent S,Amode R,Parker A,Trevanion S,Birney E,Dunham I,Flicek P|Database (Oxford)|2016
The ensembl regulatory build.|Zerbino DR,Wilder SP,Johnson N,Juettemann T,Flicek PR|Genome Biol|2015
Ensembl 2009.|Hubbard TJ,Aken BL,Ayling S,Ballester B,Beal K,Bragin E,Brent S,Chen Y,Clapham P,Clarke L,Coates G,Fairley S,Fitzgerald S,Fernandez-Banet J,Gordon L,Graf S,Haider S,Hammond M,Holland R,Howe K,Jenkinson A,Johnson N,Kahari A,Keefe D,Keenan S,Kinsella R,Kokocinski F,Kulesha E,Lawson D,Longden I,Megy K,Meidl P,Overduin B,Parker A,Pritchard B,Rios D,Schuster M,Slater G,Smedley D,Spooner W,Spudich G,Trevanion S,Vilella A,Vogel J,White S,Wilder S,Zadissa A,Birney E,Cunningham F,Curwen V,Durbin R,Fernandez-Suarez XM,Herrero J,Kasprzyk A,Proctor G,Smith J,Searle S,Flicek P|Nucleic Acids Res|2008
Touring Ensembl: a practical guide to genome browsing.|Spudich GM,Fernandez-Suarez XM|BMC Genomics|2010
Genome browsing with Ensembl: a practical overview.|Spudich G,Fernandez-Suarez XM,Birney E|Brief Funct Genomic Proteomic|2007
Ensembl 2008.|Flicek P,Aken BL,Beal K,Ballester B,Caccamo M,Chen Y,Clarke L,Coates G,Cunningham F,Cutts T,Down T,Dyer SC,Eyre T,Fitzgerald S,Fernandez-Banet J,Graf S,Haider S,Hammond M,Holland R,Howe KL,Howe K,Johnson N,Jenkinson A,Kahari A,Keefe D,Kokocinski F,Kulesha E,Lawson D,Longden I,Megy K,Meidl P,Overduin B,Parker A,Pritchard B,Prlic A,Rice S,Rios D,Schuster M,Sealy I,Slater G,Smedley D,Spudich G,Trevanion S,Vilella AJ,Vogel J,White S,Wood M,Birney E,Cox T,Curwen V,Durbin R,Fernandez-Suarez XM,Herrero J,Hubbard TJ,Kasprzyk A,Proctor G,Smith J,Ureta-Vidal A,Searle S|Nucleic Acids Res|2007
Ensembl's 10th year.|Flicek P,Aken BL,Ballester B,Beal K,Bragin E,Brent S,Chen Y,Clapham P,Coates G,Fairley S,Fitzgerald S,Fernandez-Banet J,Gordon L,Graf S,Haider S,Hammond M,Howe K,Jenkinson A,Johnson N,Kahari A,Keefe D,Keenan S,Kinsella R,Kokocinski F,Koscielny G,Kulesha E,Lawson D,Longden I,Massingham T,McLaren W,Megy K,Overduin B,Pritchard B,Rios D,Ruffier M,Schuster M,Slater G,Smedley D,Spudich G,Tang YA,Trevanion S,Vilella A,Vogel J,White S,Wilder SP,Zadissa A,Birney E,Cunningham F,Dunham I,Durbin R,Fernandez-Suarez XM,Herrero J,Hubbard TJ,Parker A,Proctor G,Smith J,Searle SM|Nucleic Acids Res|2009
Ensembl 2011.|Flicek P,Amode MR,Barrell D,Beal K,Brent S,Chen Y,Clapham P,Coates G,Fairley S,Fitzgerald S,Gordon L,Hendrix M,Hourlier T,Johnson N,Kahari A,Keefe D,Keenan S,Kinsella R,Kokocinski F,Kulesha E,Larsson P,Longden I,McLaren W,Overduin B,Pritchard B,Riat HS,Rios D,Ritchie GR,Ruffier M,Schuster M,Sobral D,Spudich G,Tang YA,Trevanion S,Vandrovcova J,Vilella AJ,White S,Wilder SP,Zadissa A,Zamora J,Aken BL,Birney E,Cunningham F,Dunham I,Durbin R,Fernandez-Suarez XM,Herrero J,Hubbard TJ,Parker A,Proctor G,Vogel J,Searle SM|Nucleic Acids Res|2010
Ensembl 2012.|Flicek P,Amode MR,Barrell D,Beal K,Brent S,Carvalho-Silva D,Clapham P,Coates G,Fairley S,Fitzgerald S,Gil L,Gordon L,Hendrix M,Hourlier T,Johnson N,Kahari AK,Keefe D,Keenan S,Kinsella R,Komorowska M,Koscielny G,Kulesha E,Larsson P,Longden I,McLaren W,Muffato M,Overduin B,Pignatelli M,Pritchard B,Riat HS,Ritchie GR,Ruffier M,Schuster M,Sobral D,Tang YA,Taylor K,Trevanion S,Vandrovcova J,White S,Wilson M,Wilder SP,Aken BL,Birney E,Cunningham F,Dunham I,Durbin R,Fernandez-Suarez XM,Harrow J,Herrero J,Hubbard TJ,Parker A,Proctor G,Spudich G,Vogel J,Yates A,Zadissa A,Searle SM|Nucleic Acids Res|2011
Ensembl 2013.|Flicek P,Ahmed I,Amode MR,Barrell D,Beal K,Brent S,Carvalho-Silva D,Clapham P,Coates G,Fairley S,Fitzgerald S,Gil L,Garcia-Giron C,Gordon L,Hourlier T,Hunt S,Juettemann T,Kahari AK,Keenan S,Komorowska M,Kulesha E,Longden I,Maurel T,McLaren WM,Muffato M,Nag R,Overduin B,Pignatelli M,Pritchard B,Pritchard E,Riat HS,Ritchie GR,Ruffier M,Schuster M,Sheppard D,Sobral D,Taylor K,Thormann A,Trevanion S,White S,Wilder SP,Aken BL,Birney E,Cunningham F,Dunham I,Harrow J,Herrero J,Hubbard TJ,Johnson N,Kinsella R,Parker A,Spudich G,Yates A,Zadissa A,Searle SM|Nucleic Acids Res|2012
Ensembl 2002: accommodating comparative genomics.|Clamp M,Andrews D,Barker D,Bevan P,Cameron G,Chen Y,Clark L,Cox T,Cuff J,Curwen V,Down T,Durbin R,Eyras E,Gilbert J,Hammond M,Hubbard T,Kasprzyk A,Keefe D,Lehvaslaiho H,Iyer V,Melsopp C,Mongin E,Pettett R,Potter S,Rust A,Schmidt E,Searle S,Slater G,Smith J,Spooner W,Stabenau A,Stalker J,Stupka E,Ureta-Vidal A,Vastrik I,Birney E|Nucleic Acids Res|2003
EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates.|Vilella AJ,Severin J,Ureta-Vidal A,Heng L,Durbin R,Birney E|Genome Res|2008
Ensembl variation resources.|Chen Y,Cunningham F,Rios D,McLaren WM,Smith J,Pritchard B,Spudich GM,Brent S,Kulesha E,Marin-Garcia P,Smedley D,Birney E,Flicek P|BMC Genomics|2010
Ensembl 2002: accommodating comparative genomics.|Clamp M,Andrews D,Barker D,Bevan P,Cameron G,Chen Y,Clark L,Cox T,Cuff J,Curwen V,Down T,Durbin R,Eyras E,Gilbert J,Hammond M,Hubbard T,Kasprzyk A,Keefe D,Lehvaslaiho H,Iyer V,Melsopp C,Mongin E,Pettett R,Potter S,Rust A,Schmidt E,Searle S,Slater G,Smith J,Spooner W,Stabenau A,Stalker J,Stupka E,Ureta-Vidal A,Vastrik I,Birney E|Nucleic Acids Res|2003
The Ensembl analysis pipeline.|Potter SC,Clarke L,Curwen V,Keenan S,Mongin E,Searle SM,Stabenau A,Storey R,Clamp M|Genome Res|2004
The Ensembl automatic gene annotation system.|Curwen V,Eyras E,Andrews TD,Clarke L,Mongin E,Searle SM,Clamp M|Genome Res|2004
After:
The Ensembl REST API: Ensembl Data for Any Language.|Yates A,Beal K,Keenan S,McLaren W,Pignatelli M,Ritchie GR,Ruffier M,Taylor K,Vullo A,Flicek P|Bioinformatics|2014
The Ensembl Variant Effect Predictor.|McLaren W,Gil L,Hunt SE,Riat HS,Ritchie GR,Thormann A,Flicek P,Cunningham F|Genome Biol|2016
Incorporating RNA-seq data into the zebrafish Ensembl genebuild.|Collins JE,White S,Searle SM,Stemple DL|Genome Res|2012
Ensembl comparative genomics resources.|Herrero J,Muffato M,Beal K,Fitzgerald S,Gordon L,Pignatelli M,Vilella AJ,Searle SM,Amode R,Brent S,Spooner W,Kulesha E,Yates A,Flicek P|Database (Oxford)|2016
The Ensembl Web site: mechanics of a genome browser.|Stalker J,Gibbins B,Meidl P,Smith J,Spooner W,Hotz HR,Cox AV|Genome Res|2004
The Ensembl core software libraries.|Stabenau A,McVicker G,Melsopp C,Proctor G,Clamp M,Birney E|Genome Res|2004
GENCODE: the reference human genome annotation for The ENCODE Project.|Harrow J,Frankish A,Gonzalez JM,Tapanari E,Diekhans M,Kokocinski F,Aken BL,Barrell D,Zadissa A,Searle S,Barnes I,Bignell A,Boychenko V,Hunt T,Kay M,Mukherjee G,Rajan J,Despacio-Reyes G,Saunders G,Steward C,Harte R,Lin M,Howald C,Tanzer A,Derrien T,Chrast J,Walters N,Balasubramanian S,Pei B,Tress M,Rodriguez JM,Ezkurdia I,van Baren J,Brent M,Haussler D,Kellis M,Valencia A,Reymond A,Gerstein M,Guigo R,Hubbard TJ|Genome Res|2012
Disease and phenotype data at Ensembl.|Spudich GM,Fernandez-Suarez XM|Curr Protoc Hum Genet|2011
Genome information resources - developments at Ensembl.|Hammond MP,Birney E|Trends Genet|2004
Ensembl BioMarts: a hub for data retrieval across taxonomic space.|Kinsella RJ,Kahari A,Haider S,Zamora J,Proctor G,Spudich G,Almeida-King J,Staines D,Derwent P,Kerhornou A,Kersey P,Flicek P|Database (Oxford)|2011
Ensembl 2015|Cunningham F et al.|Nucleic Acids Res.|2015
Ensembl 2006.|Birney E,Andrews D,Caccamo M,Chen Y,Clarke L,Coates G,Cox T,Cunningham F,Curwen V,Cutts T,Down T,Durbin R,Fernandez-Suarez XM,Flicek P,Graf S,Hammond M,Herrero J,Howe K,Iyer V,Jekosch K,Kahari A,Kasprzyk A,Keefe D,Kokocinski F,Kulesha E,London D,Longden I,Melsopp C,Meidl P,Overduin B,Parker A,Proctor G,Prlic A,Rae M,Rios D,Redmond S,Schuster M,Sealy I,Searle S,Severin J,Slater G,Smedley D,Smith J,Stabenau A,Stalker J,Trevanion S,Ureta-Vidal A,Vogel J,White S,Woodwark C,Hubbard TJ|Nucleic Acids Res|2005
The Ensembl REST API: Ensembl Data for Any Language.|Yates A,Beal K,Keenan S,McLaren W,Pignatelli M,Ritchie GR,Ruffier M,Taylor K,Vullo A,Flicek P|Bioinformatics|2014
Ensembl 2014.|Flicek P,Amode MR,Barrell D,Beal K,Billis K,Brent S,Carvalho-Silva D,Clapham P,Coates G,Fitzgerald S,Gil L,Giron CG,Gordon L,Hourlier T,Hunt S,Johnson N,Juettemann T,Kahari AK,Keenan S,Kulesha E,Martin FJ,Maurel T,McLaren WM,Murphy DN,Nag R,Overduin B,Pignatelli M,Pritchard B,Pritchard E,Riat HS,Ruffier M,Sheppard D,Taylor K,Thormann A,Trevanion SJ,Vullo A,Wilder SP,Wilson M,Zadissa A,Aken BL,Birney E,Cunningham F,Harrow J,Herrero J,Hubbard TJ,Kinsella R,Muffato M,Parker A,Spudich G,Yates A,Zerbino DR,Searle SM|Nucleic Acids Res|2013
Ensembl 2006.|Birney E,Andrews D,Caccamo M,Chen Y,Clarke L,Coates G,Cox T,Cunningham F,Curwen V,Cutts T,Down T,Durbin R,Fernandez-Suarez XM,Flicek P,Graf S,Hammond M,Herrero J,Howe K,Iyer V,Jekosch K,Kahari A,Kasprzyk A,Keefe D,Kokocinski F,Kulesha E,London D,Longden I,Melsopp C,Meidl P,Overduin B,Parker A,Proctor G,Prlic A,Rae M,Rios D,Redmond S,Schuster M,Sealy I,Searle S,Severin J,Slater G,Smedley D,Smith J,Stabenau A,Stalker J,Trevanion S,Ureta-Vidal A,Vogel J,White S,Woodwark C,Hubbard TJ|Nucleic Acids Res|2005
ncRNA orthologies in the vertebrate lineage.|Pignatelli M,Vilella AJ,Muffato M,Gordon L,White S,Flicek P,Herrero J|Database (Oxford)|2016
Ensembl comparative genomics resources.|Herrero J,Muffato M,Beal K,Fitzgerald S,Gordon L,Pignatelli M,Vilella AJ,Searle SM,Amode R,Brent S,Spooner W,Kulesha E,Yates A,Flicek P|Database (Oxford)|2016
The Ensembl computing architecture.|Cuff JA,Coates GM,Cutts TJ,Rae M|Genome Res|2004
Ensembl 2005.|Hubbard T,Andrews D,Caccamo M,Cameron G,Chen Y,Clamp M,Clarke L,Coates G,Cox T,Cunningham F,Curwen V,Cutts T,Down T,Durbin R,Fernandez-Suarez XM,Gilbert J,Hammond M,Herrero J,Hotz H,Howe K,Iyer V,Jekosch K,Kahari A,Kasprzyk A,Keefe D,Keenan S,Kokocinsci F,London D,Longden I,McVicker G,Melsopp C,Meidl P,Potter S,Proctor G,Rae M,Rios D,Schuster M,Searle S,Severin J,Slater G,Smedley D,Smith J,Spooner W,Stabenau A,Stalker J,Storey R,Trevanion S,Ureta-Vidal A,Vogel J,White S,Woodwark C,Birney E|Nucleic Acids Res|2004
ESTGenes: alternative splicing from ESTs in Ensembl.|Eyras E,Caccamo M,Curwen V,Clamp M|Genome Res|2004
WiggleTools: parallel processing of large collections of genome-wide datasets for visualization and statistical analysis.|Zerbino DR,Johnson N,Juettemann T,Wilder SP,Flicek P|Bioinformatics|2013
The ensembl regulatory build.|Zerbino DR,Wilder SP,Johnson N,Juettemann T,Flicek PR|Genome Biol|2015
Ensembl 2017.|Aken BL,Achuthan P,Akanni W,Amode MR,Bernsdorff F,Bhai J,Billis K,Carvalho-Silva D,Cummins C,Clapham P,Gil L,Giron CG,Gordon L,Hourlier T,Hunt SE,Janacek SH,Juettemann T,Keenan S,Laird MR,Lavidas I,Maurel T,McLaren W,Moore B,Murphy DN,Nag R,Newman V,Nuhn M,Ong CK,Parker A,Patricio M,Riat HS,Sheppard D,Sparrow H,Taylor K,Thormann A,Vullo A,Walts B,Wilder SP,Zadissa A,Kostadima M,Martin FJ,Muffato M,Perry E,Ruffier M,Staines DM,Trevanion SJ,Cunningham F,Yates A,Zerbino DR,Flicek P|Nucleic Acids Res|2016
TranscriptSNPView: a genome-wide catalog of mouse coding variation.|Cunningham F,Rios D,Griffiths M,Smith J,Ning Z,Cox T,Flicek P,Marin-Garcin P,Herrero J,Rogers J,van der Weyden L,Bradley A,Birney E,Adams DJ|Nat Genet|2006
Ensembl 2016.|Yates A,Akanni W,Amode MR,Barrell D,Billis K,Carvalho-Silva D,Cummins C,Clapham P,Fitzgerald S,Gil L,Giron CG,Gordon L,Hourlier T,Hunt SE,Janacek SH,Johnson N,Juettemann T,Keenan S,Lavidas I,Martin FJ,Maurel T,McLaren W,Murphy DN,Nag R,Nuhn M,Parker A,Patricio M,Pignatelli M,Rahtz M,Riat HS,Sheppard D,Taylor K,Thormann A,Vullo A,Wilder SP,Zadissa A,Birney E,Harrow J,Muffato M,Perry E,Ruffier M,Spudich G,Trevanion SJ,Cunningham F,Aken BL,Zerbino DR,Flicek P|Nucleic Acids Res|2015
Genome-wide nucleotide-level mammalian ancestor reconstruction.|Paten B,Herrero J,Fitzgerald S,Beal K,Flicek P,Holmes I,Birney E|Genome Res|2008
Ensembl 2008.|Flicek P,Aken BL,Beal K,Ballester B,Caccamo M,Chen Y,Clarke L,Coates G,Cunningham F,Cutts T,Down T,Dyer SC,Eyre T,Fitzgerald S,Fernandez-Banet J,Graf S,Haider S,Hammond M,Holland R,Howe KL,Howe K,Johnson N,Jenkinson A,Kahari A,Keefe D,Kokocinski F,Kulesha E,Lawson D,Longden I,Megy K,Meidl P,Overduin B,Parker A,Pritchard B,Prlic A,Rice S,Rios D,Schuster M,Sealy I,Slater G,Smedley D,Spudich G,Trevanion S,Vilella AJ,Vogel J,White S,Wood M,Birney E,Cox T,Curwen V,Durbin R,Fernandez-Suarez XM,Herrero J,Hubbard TJ,Kasprzyk A,Proctor G,Smith J,Ureta-Vidal A,Searle S|Nucleic Acids Res|2007
EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates.|Vilella AJ,Severin J,Ureta-Vidal A,Heng L,Durbin R,Birney E|Genome Res|2008
Ensembl 2002: accommodating comparative genomics.|Clamp M,Andrews D,Barker D,Bevan P,Cameron G,Chen Y,Clark L,Cox T,Cuff J,Curwen V,Down T,Durbin R,Eyras E,Gilbert J,Hammond M,Hubbard T,Kasprzyk A,Keefe D,Lehvaslaiho H,Iyer V,Melsopp C,Mongin E,Pettett R,Potter S,Rust A,Schmidt E,Searle S,Slater G,Smith J,Spooner W,Stabenau A,Stalker J,Stupka E,Ureta-Vidal A,Vastrik I,Birney E|Nucleic Acids Res|2003
Ensembl variation resources.|Chen Y,Cunningham F,Rios D,McLaren WM,Smith J,Pritchard B,Spudich GM,Brent S,Kulesha E,Marin-Garcia P,Smedley D,Birney E,Flicek P|BMC Genomics|2010
Ensembl 2002: accommodating comparative genomics.|Clamp M,Andrews D,Barker D,Bevan P,Cameron G,Chen Y,Clark L,Cox T,Cuff J,Curwen V,Down T,Durbin R,Eyras E,Gilbert J,Hammond M,Hubbard T,Kasprzyk A,Keefe D,Lehvaslaiho H,Iyer V,Melsopp C,Mongin E,Pettett R,Potter S,Rust A,Schmidt E,Searle S,Slater G,Smith J,Spooner W,Stabenau A,Stalker J,Stupka E,Ureta-Vidal A,Vastrik I,Birney E|Nucleic Acids Res|2003
The Ensembl genome database project.|Hubbard T,Barker D,Birney E,Cameron G,Chen Y,Clark L,Cox T,Cuff J,Curwen V,Down T,Durbin R,Eyras E,Gilbert J,Hammond M,Huminiecki L,Kasprzyk A,Lehvaslaiho H,Lijnzaad P,Melsopp C,Mongin E,Pettett R,Pocock M,Potter S,Rust A,Schmidt E,Searle S,Slater G,Smith J,Spooner W,Stabenau A,Stalker J,Stupka E,Ureta-Vidal A,Vastrik I,Clamp M|Nucleic Acids Res|2001
Ensembl 2007.|Hubbard TJ,Aken BL,Beal K,Ballester B,Caccamo M,Chen Y,Clarke L,Coates G,Cunningham F,Cutts T,Down T,Dyer SC,Fitzgerald S,Fernandez-Banet J,Graf S,Haider S,Hammond M,Herrero J,Holland R,Howe K,Howe K,Johnson N,Kahari A,Keefe D,Kokocinski F,Kulesha E,Lawson D,Longden I,Melsopp C,Megy K,Meidl P,Ouverdin B,Parker A,Prlic A,Rice S,Rios D,Schuster M,Sealy I,Severin J,Slater G,Smedley D,Spudich G,Trevanion S,Vilella A,Vogel J,White S,Wood M,Cox T,Curwen V,Durbin R,Fernandez-Suarez XM,Flicek P,Kasprzyk A,Proctor G,Searle S,Smith J,Ureta-Vidal A,Birney E|Nucleic Acids Res|2006
The Ensembl gene annotation system.|Aken BL,Ayling S,Barrell D,Clarke L,Curwen V,Fairley S,Fernandez Banet J,Billis K,Garcia Giron C,Hourlier T,Howe K,Kahari A,Kokocinski F,Martin FJ,Murphy DN,Nag R,Ruffier M,Schuster M,Tang YA,Vogel JH,White S,Zadissa A,Flicek P,Searle SM|Database (Oxford)|2016
The ensembl regulatory build.|Zerbino DR,Wilder SP,Johnson N,Juettemann T,Flicek PR|Genome Biol|2015
eHive: an artificial intelligence workflow system for genomic analysis.|Severin J,Beal K,Vilella AJ,Fitzgerald S,Schuster M,Gordon L,Ureta-Vidal A,Flicek P,Herrero J|BMC Bioinformatics|2010
A database and API for variation, dense genotyping and resequencing data.|Rios D,McLaren WM,Chen Y,Birney E,Stabenau A,Flicek P,Cunningham F|BMC Bioinformatics|2010
Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor.|McLaren W,Pritchard B,Rios D,Chen Y,Flicek P,Cunningham F|Bioinformatics|2010
Ensembl regulation resources.|Zerbino DR,Johnson N,Juetteman T,Sheppard D,Wilder SP,Lavidas I,Nuhn M,Perry E,Raffaillac-Desfosses Q,Sobral D,Keefe D,Graf S,Ahmed I,Kinsella R,Pritchard B,Brent S,Amode R,Parker A,Trevanion S,Birney E,Dunham I,Flicek P|Database (Oxford)|2016
Ensembl 2009.|Hubbard TJ,Aken BL,Ayling S,Ballester B,Beal K,Bragin E,Brent S,Chen Y,Clapham P,Clarke L,Coates G,Fairley S,Fitzgerald S,Fernandez-Banet J,Gordon L,Graf S,Haider S,Hammond M,Holland R,Howe K,Jenkinson A,Johnson N,Kahari A,Keefe D,Keenan S,Kinsella R,Kokocinski F,Kulesha E,Lawson D,Longden I,Megy K,Meidl P,Overduin B,Parker A,Pritchard B,Rios D,Schuster M,Slater G,Smedley D,Spooner W,Spudich G,Trevanion S,Vilella A,Vogel J,White S,Wilder S,Zadissa A,Birney E,Cunningham F,Curwen V,Durbin R,Fernandez-Suarez XM,Herrero J,Kasprzyk A,Proctor G,Smith J,Searle S,Flicek P|Nucleic Acids Res|2008
Touring Ensembl: a practical guide to genome browsing.|Spudich GM,Fernandez-Suarez XM|BMC Genomics|2010
Genome browsing with Ensembl: a practical overview.|Spudich G,Fernandez-Suarez XM,Birney E|Brief Funct Genomic Proteomic|2007
Ensembl's 10th year.|Flicek P,Aken BL,Ballester B,Beal K,Bragin E,Brent S,Chen Y,Clapham P,Coates G,Fairley S,Fitzgerald S,Fernandez-Banet J,Gordon L,Graf S,Haider S,Hammond M,Howe K,Jenkinson A,Johnson N,Kahari A,Keefe D,Keenan S,Kinsella R,Kokocinski F,Koscielny G,Kulesha E,Lawson D,Longden I,Massingham T,McLaren W,Megy K,Overduin B,Pritchard B,Rios D,Ruffier M,Schuster M,Slater G,Smedley D,Spudich G,Tang YA,Trevanion S,Vilella A,Vogel J,White S,Wilder SP,Zadissa A,Birney E,Cunningham F,Dunham I,Durbin R,Fernandez-Suarez XM,Herrero J,Hubbard TJ,Parker A,Proctor G,Smith J,Searle SM|Nucleic Acids Res|2009
Ensembl 2011.|Flicek P,Amode MR,Barrell D,Beal K,Brent S,Chen Y,Clapham P,Coates G,Fairley S,Fitzgerald S,Gordon L,Hendrix M,Hourlier T,Johnson N,Kahari A,Keefe D,Keenan S,Kinsella R,Kokocinski F,Kulesha E,Larsson P,Longden I,McLaren W,Overduin B,Pritchard B,Riat HS,Rios D,Ritchie GR,Ruffier M,Schuster M,Sobral D,Spudich G,Tang YA,Trevanion S,Vandrovcova J,Vilella AJ,White S,Wilder SP,Zadissa A,Zamora J,Aken BL,Birney E,Cunningham F,Dunham I,Durbin R,Fernandez-Suarez XM,Herrero J,Hubbard TJ,Parker A,Proctor G,Vogel J,Searle SM|Nucleic Acids Res|2010
Ensembl 2012.|Flicek P,Amode MR,Barrell D,Beal K,Brent S,Carvalho-Silva D,Clapham P,Coates G,Fairley S,Fitzgerald S,Gil L,Gordon L,Hendrix M,Hourlier T,Johnson N,Kahari AK,Keefe D,Keenan S,Kinsella R,Komorowska M,Koscielny G,Kulesha E,Larsson P,Longden I,McLaren W,Muffato M,Overduin B,Pignatelli M,Pritchard B,Riat HS,Ritchie GR,Ruffier M,Schuster M,Sobral D,Tang YA,Taylor K,Trevanion S,Vandrovcova J,White S,Wilson M,Wilder SP,Aken BL,Birney E,Cunningham F,Dunham I,Durbin R,Fernandez-Suarez XM,Harrow J,Herrero J,Hubbard TJ,Parker A,Proctor G,Spudich G,Vogel J,Yates A,Zadissa A,Searle SM|Nucleic Acids Res|2011
Ensembl 2013.|Flicek P,Ahmed I,Amode MR,Barrell D,Beal K,Brent S,Carvalho-Silva D,Clapham P,Coates G,Fairley S,Fitzgerald S,Gil L,Garcia-Giron C,Gordon L,Hourlier T,Hunt S,Juettemann T,Kahari AK,Keenan S,Komorowska M,Kulesha E,Longden I,Maurel T,McLaren WM,Muffato M,Nag R,Overduin B,Pignatelli M,Pritchard B,Pritchard E,Riat HS,Ritchie GR,Ruffier M,Schuster M,Sheppard D,Sobral D,Taylor K,Thormann A,Trevanion S,White S,Wilder SP,Aken BL,Birney E,Cunningham F,Dunham I,Harrow J,Herrero J,Hubbard TJ,Johnson N,Kinsella R,Parker A,Spudich G,Yates A,Zadissa A,Searle SM|Nucleic Acids Res|2012
The Ensembl analysis pipeline.|Potter SC,Clarke L,Curwen V,Keenan S,Mongin E,Searle SM,Stabenau A,Storey R,Clamp M|Genome Res|2004
The Ensembl automatic gene annotation system.|Curwen V,Eyras E,Andrews TD,Clarke L,Mongin E,Searle SM,Clamp M|Genome Res|2004
Ensembl 2019.|Cunningham F,Achuthan P,Akanni W,Allen J,Amode MR,Armean IM,Bennett R,Bhai J,Billis K,Boddu S,Cummins C,Davidson C,Dodiya KJ,Gall A,Giron CG,Gil L,Grego T,Haggerty L,Haskell E,Hourlier T,Izuogu OG,Janacek SH,Juettemann T,Kay M,Laird MR,Lavidas I,Liu Z,Loveland JE,Marugan JC,Maurel T,McMahon AC,Moore B,Morales J,Mudge JM,Nuhn M,Ogeh D,Parker A,Parton A,Patricio M,Abdul Salam AI,Schmitt BM,Schuilenburg H,Sheppard D,Sparrow H,Stapleton E,Szuba M,Taylor K,Threadgold G,Thormann A,Vullo A,Walts B,Winterbottom A,Zadissa A,Chakiachvili M,Frankish A,Hunt SE,Kostadima M,Langridge N,Martin FJ,Muffato M,Perry E,Ruffier M,Staines DM,Trevanion SJ,Aken BL,Yates AD,Zerbino DR,Flicek P|Nucleic Acids Res|2018
Added:
Ensembl 2019.|Cunningham F,Achuthan P,Akanni W,Allen J,Amode MR,Armean IM,Bennett R,Bhai J,Billis K,Boddu S,Cummins C,Davidson C,Dodiya KJ,Gall A,Giron CG,Gil L,Grego T,Haggerty L,Haskell E,Hourlier T,Izuogu OG,Janacek SH,Juettemann T,Kay M,Laird MR,Lavidas I,Liu Z,Loveland JE,Marugan JC,Maurel T,McMahon AC,Moore B,Morales J,Mudge JM,Nuhn M,Ogeh D,Parker A,Parton A,Patricio M,Abdul Salam AI,Schmitt BM,Schuilenburg H,Sheppard D,Sparrow H,Stapleton E,Szuba M,Taylor K,Threadgold G,Thormann A,Vullo A,Walts B,Winterbottom A,Zadissa A,Chakiachvili M,Frankish A,Hunt SE,Kostadima M,Langridge N,Martin FJ,Muffato M,Perry E,Ruffier M,Staines DM,Trevanion SJ,Aken BL,Yates AD,Zerbino DR,Flicek P|Nucleic Acids Res|2018
Removed:
'accessPoints' has been modified:
Before:
After:
REST|http://rest.ensembl.org/|Ensembl REST API
Added:
REST|http://rest.ensembl.org/|Ensembl REST API
Removed:
'tools' has been modified:
Before:
VEP||http://www.ensembl.org/VEP
BioMart||http://www.ensembl.org/biomart
REST||http://rest.ensembl.org
After:
VEP||https://www.ensembl.org/info/docs/tools/vep/index.html
BioMart||https://www.ensembl.org/biomart/martview/
Tools: Complete List||https://www.ensembl.org/info/docs/tools/index.html
BLAST / BLAT||https://www.ensembl.org/Multi/Tools/Blast
Added:
VEP||https://www.ensembl.org/info/docs/tools/vep/index.html
BioMart||https://www.ensembl.org/biomart/martview/
Tools: Complete List||https://www.ensembl.org/info/docs/tools/index.html
BLAST / BLAT||https://www.ensembl.org/Multi/Tools/Blast
Removed:
VEP||http://www.ensembl.org/VEP
BioMart||http://www.ensembl.org/biomart
REST||http://rest.ensembl.org
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'The FAIRsharing Team' at 09:43, 06 Aug 2018 (approved):
'related_databases' has been modified:
Before:
NONCODE
Gene3D
neXtProt
WikiPathways
Open Regulatory Annotation
PRoteomics IDEntifications database
Reactome - a curated knowledgebase of biological pathways
PeroxisomeDB
Rat Genome Database
SUPERFAMILY
Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
The Consensus CDS
GeneNetwork
The Vertebrate Genome Annotation Database
UniProt Knowledgebase
Xenopus laevis and tropicalis biology and genomics resource
Annmap
Database of Genomic Variants Archive
Medaka Expression Pattern Database
GeneWeaver
Image Data Resource
SSBD: Systems Science of Biological Dynamics
Microenvironment Perturbagen LINCS Center image server
Wikidata
REGULATOR
Ensembl Genomes
Orthologous MAtrix
Ensembl Bacteria
Ensembl Protists
Ensembl Plants
Ensembl Fungi
Ensembl Metazoa
GenomeHubs
Vertebrate Secretome Database
Gene Transcription Regulation Database
R-loopDB
ORTHOlogous MAmmalian Markers
BCL-2 Database
Selectome
HypoxiaDB
Bovine Genome Database
Pancreatic Expression database
Selective Targets database
DatabasE of genomiC varIation and Phenotype in Humans using Ensembl Resources
MUGEN mouse database
Satellog
InParanoid
MitoProteome
After:
NONCODE
Gene3D
neXtProt
WikiPathways
Open Regulatory Annotation
PRoteomics IDEntifications database
Reactome - a curated knowledgebase of biological pathways
PeroxisomeDB
Rat Genome Database
SUPERFAMILY
Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
The Consensus CDS
GeneNetwork
The Vertebrate Genome Annotation Database
UniProt Knowledgebase
Xenopus laevis and tropicalis biology and genomics resource
Annmap
Database of Genomic Variants Archive
Medaka Expression Pattern Database
GeneWeaver
Image Data Resource
SSBD: Systems Science of Biological Dynamics
Microenvironment Perturbagen LINCS Center image server
Wikidata
REGULATOR
Ensembl Genomes
Orthologous MAtrix
Ensembl Bacteria
Ensembl Protists
Ensembl Plants
Ensembl Fungi
Ensembl Metazoa
GenomeHubs
Vertebrate Secretome Database
Gene Transcription Regulation Database
R-loopDB
ORTHOlogous MAmmalian Markers
BCL-2 Database
Selectome
HypoxiaDB
Bovine Genome Database
Pancreatic Expression database
Selective Targets database
DatabasE of genomiC varIation and Phenotype in Humans using Ensembl Resources
MUGEN mouse database
Satellog
InParanoid
Added:
Removed:
MitoProteome
'tools' has been modified:
Before:
VEP||http://www.ensembl.org/VEP
BLAST/BLAT||http://www.ensembl.org/Multi/blastview
BioMart||http://www.ensembl.org/biomart
REST||http://rest.ensembl.org
After:
VEP||http://www.ensembl.org/VEP
BioMart||http://www.ensembl.org/biomart
REST||http://rest.ensembl.org
Added:
Removed:
BLAST/BLAT||http://www.ensembl.org/Multi/blastview
'dataProcesses' has been modified:
Before:
FTP
After:
FTP
Blast
Added:
Blast
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'The FAIRsharing Team' at 08:57, 06 Aug 2018 (approved):
'related_databases' has been modified:
Before:
NONCODE
Gene3D
neXtProt
WikiPathways
Open Regulatory Annotation
PRoteomics IDEntifications database
Reactome - a curated knowledgebase of biological pathways
PeroxisomeDB
Rat Genome Database
SUPERFAMILY
Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
The Consensus CDS
GeneNetwork
UniProt Knowledgebase
Xenopus laevis and tropicalis biology and genomics resource
Annmap
Database of Genomic Variants Archive
Medaka Expression Pattern Database
GeneWeaver
Image Data Resource
SSBD: Systems Science of Biological Dynamics
Microenvironment Perturbagen LINCS Center image server
Wikidata
REGULATOR
Ensembl Genomes
Orthologous MAtrix
Ensembl Bacteria
Ensembl Protists
Ensembl Plants
Ensembl Fungi
Ensembl Metazoa
GenomeHubs
Vertebrate Secretome Database
Gene Transcription Regulation Database
R-loopDB
ORTHOlogous MAmmalian Markers
BCL-2 Database
Selectome
HypoxiaDB
Bovine Genome Database
Pancreatic Expression database
Selective Targets database
DatabasE of genomiC varIation and Phenotype in Humans using Ensembl Resources
MUGEN mouse database
Satellog
InParanoid
After:
NONCODE
Gene3D
neXtProt
WikiPathways
Open Regulatory Annotation
PRoteomics IDEntifications database
Reactome - a curated knowledgebase of biological pathways
PeroxisomeDB
Rat Genome Database
SUPERFAMILY
Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
The Consensus CDS
GeneNetwork
The Vertebrate Genome Annotation Database
UniProt Knowledgebase
Xenopus laevis and tropicalis biology and genomics resource
Annmap
Database of Genomic Variants Archive
Medaka Expression Pattern Database
GeneWeaver
Image Data Resource
SSBD: Systems Science of Biological Dynamics
Microenvironment Perturbagen LINCS Center image server
Wikidata
REGULATOR
Ensembl Genomes
Orthologous MAtrix
Ensembl Bacteria
Ensembl Protists
Ensembl Plants
Ensembl Fungi
Ensembl Metazoa
GenomeHubs
Vertebrate Secretome Database
Gene Transcription Regulation Database
R-loopDB
ORTHOlogous MAmmalian Markers
BCL-2 Database
Selectome
HypoxiaDB
Bovine Genome Database
Pancreatic Expression database
Selective Targets database
DatabasE of genomiC varIation and Phenotype in Humans using Ensembl Resources
MUGEN mouse database
Satellog
InParanoid
Added:
The Vertebrate Genome Annotation Database
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'The FAIRsharing Team' at 10:30, 05 Aug 2018 (approved):
'related_databases' has been modified:
Before:
NONCODE
Gene3D
neXtProt
WikiPathways
PRoteomics IDEntifications database
Reactome - a curated knowledgebase of biological pathways
PeroxisomeDB
Rat Genome Database
SUPERFAMILY
Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
The Consensus CDS
GeneNetwork
UniProt Knowledgebase
Xenopus laevis and tropicalis biology and genomics resource
Annmap
Database of Genomic Variants Archive
Medaka Expression Pattern Database
GeneWeaver
Image Data Resource
SSBD: Systems Science of Biological Dynamics
Microenvironment Perturbagen LINCS Center image server
Wikidata
REGULATOR
Ensembl Genomes
Orthologous MAtrix
Ensembl Bacteria
Ensembl Protists
Ensembl Plants
Ensembl Fungi
Ensembl Metazoa
GenomeHubs
Vertebrate Secretome Database
Gene Transcription Regulation Database
R-loopDB
ORTHOlogous MAmmalian Markers
BCL-2 Database
Selectome
HypoxiaDB
Bovine Genome Database
Pancreatic Expression database
Selective Targets database
DatabasE of genomiC varIation and Phenotype in Humans using Ensembl Resources
MUGEN mouse database
After:
NONCODE
Gene3D
neXtProt
WikiPathways
Open Regulatory Annotation
PRoteomics IDEntifications database
Reactome - a curated knowledgebase of biological pathways
PeroxisomeDB
Rat Genome Database
SUPERFAMILY
Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
The Consensus CDS
GeneNetwork
UniProt Knowledgebase
Xenopus laevis and tropicalis biology and genomics resource
Annmap
Database of Genomic Variants Archive
Medaka Expression Pattern Database
GeneWeaver
Image Data Resource
SSBD: Systems Science of Biological Dynamics
Microenvironment Perturbagen LINCS Center image server
Wikidata
REGULATOR
Ensembl Genomes
Orthologous MAtrix
Ensembl Bacteria
Ensembl Protists
Ensembl Plants
Ensembl Fungi
Ensembl Metazoa
GenomeHubs
Vertebrate Secretome Database
Gene Transcription Regulation Database
R-loopDB
ORTHOlogous MAmmalian Markers
BCL-2 Database
Selectome
HypoxiaDB
Bovine Genome Database
Pancreatic Expression database
Selective Targets database
DatabasE of genomiC varIation and Phenotype in Humans using Ensembl Resources
MUGEN mouse database
Added:
Open Regulatory Annotation
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'The FAIRsharing Team' at 10:27, 05 Aug 2018 (approved):
'related_databases' has been modified:
Before:
NONCODE
Gene3D
neXtProt
WikiPathways
PRoteomics IDEntifications database
Reactome - a curated knowledgebase of biological pathways
Rat Genome Database
SUPERFAMILY
Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
The Consensus CDS
GeneNetwork
UniProt Knowledgebase
Xenopus laevis and tropicalis biology and genomics resource
Annmap
Database of Genomic Variants Archive
Medaka Expression Pattern Database
GeneWeaver
Image Data Resource
SSBD: Systems Science of Biological Dynamics
Microenvironment Perturbagen LINCS Center image server
Wikidata
REGULATOR
Ensembl Genomes
Orthologous MAtrix
Ensembl Bacteria
Ensembl Protists
Ensembl Plants
Ensembl Fungi
Ensembl Metazoa
GenomeHubs
Vertebrate Secretome Database
Gene Transcription Regulation Database
R-loopDB
ORTHOlogous MAmmalian Markers
BCL-2 Database
Selectome
HypoxiaDB
Bovine Genome Database
Pancreatic Expression database
Selective Targets database
DatabasE of genomiC varIation and Phenotype in Humans using Ensembl Resources
MUGEN mouse database
After:
NONCODE
Gene3D
neXtProt
WikiPathways
PRoteomics IDEntifications database
Reactome - a curated knowledgebase of biological pathways
PeroxisomeDB
Rat Genome Database
SUPERFAMILY
Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
The Consensus CDS
GeneNetwork
UniProt Knowledgebase
Xenopus laevis and tropicalis biology and genomics resource
Annmap
Database of Genomic Variants Archive
Medaka Expression Pattern Database
GeneWeaver
Image Data Resource
SSBD: Systems Science of Biological Dynamics
Microenvironment Perturbagen LINCS Center image server
Wikidata
REGULATOR
Ensembl Genomes
Orthologous MAtrix
Ensembl Bacteria
Ensembl Protists
Ensembl Plants
Ensembl Fungi
Ensembl Metazoa
GenomeHubs
Vertebrate Secretome Database
Gene Transcription Regulation Database
R-loopDB
ORTHOlogous MAmmalian Markers
BCL-2 Database
Selectome
HypoxiaDB
Bovine Genome Database
Pancreatic Expression database
Selective Targets database
DatabasE of genomiC varIation and Phenotype in Humans using Ensembl Resources
MUGEN mouse database
Added:
PeroxisomeDB
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'The FAIRsharing Team' at 18:06, 03 Aug 2018 (approved):
'related_databases' has been modified:
Before:
NONCODE
Gene3D
neXtProt
WikiPathways
PRoteomics IDEntifications database
Reactome - a curated knowledgebase of biological pathways
Rat Genome Database
SUPERFAMILY
Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
The Consensus CDS
GeneNetwork
UniProt Knowledgebase
Xenopus laevis and tropicalis biology and genomics resource
Annmap
Database of Genomic Variants Archive
Medaka Expression Pattern Database
GeneWeaver
Image Data Resource
SSBD: Systems Science of Biological Dynamics
Microenvironment Perturbagen LINCS Center image server
Wikidata
REGULATOR
Ensembl Genomes
Orthologous MAtrix
Ensembl Bacteria
Ensembl Protists
Ensembl Plants
Ensembl Fungi
Ensembl Metazoa
GenomeHubs
Vertebrate Secretome Database
Gene Transcription Regulation Database
R-loopDB
ORTHOlogous MAmmalian Markers
BCL-2 Database
Selectome
HypoxiaDB
Bovine Genome Database
Pancreatic Expression database
Selective Targets database
DatabasE of genomiC varIation and Phenotype in Humans using Ensembl Resources
After:
NONCODE
Gene3D
neXtProt
WikiPathways
PRoteomics IDEntifications database
Reactome - a curated knowledgebase of biological pathways
Rat Genome Database
SUPERFAMILY
Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
The Consensus CDS
GeneNetwork
UniProt Knowledgebase
Xenopus laevis and tropicalis biology and genomics resource
Annmap
Database of Genomic Variants Archive
Medaka Expression Pattern Database
GeneWeaver
Image Data Resource
SSBD: Systems Science of Biological Dynamics
Microenvironment Perturbagen LINCS Center image server
Wikidata
REGULATOR
Ensembl Genomes
Orthologous MAtrix
Ensembl Bacteria
Ensembl Protists
Ensembl Plants
Ensembl Fungi
Ensembl Metazoa
GenomeHubs
Vertebrate Secretome Database
Gene Transcription Regulation Database
R-loopDB
ORTHOlogous MAmmalian Markers
BCL-2 Database
Selectome
HypoxiaDB
Bovine Genome Database
Pancreatic Expression database
Selective Targets database
DatabasE of genomiC varIation and Phenotype in Humans using Ensembl Resources
MUGEN mouse database
Added:
MUGEN mouse database
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'The FAIRsharing Team' at 18:06, 03 Aug 2018 (approved):
'related_databases' has been modified:
Before:
NONCODE
Gene3D
neXtProt
WikiPathways
PRoteomics IDEntifications database
Reactome - a curated knowledgebase of biological pathways
Rat Genome Database
SUPERFAMILY
Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
The Consensus CDS
GeneNetwork
UniProt Knowledgebase
Xenopus laevis and tropicalis biology and genomics resource
Annmap
Database of Genomic Variants Archive
Medaka Expression Pattern Database
GeneWeaver
Image Data Resource
SSBD: Systems Science of Biological Dynamics
Microenvironment Perturbagen LINCS Center image server
Wikidata
REGULATOR
Ensembl Genomes
Orthologous MAtrix
Ensembl Bacteria
Ensembl Protists
Ensembl Plants
Ensembl Fungi
Ensembl Metazoa
GenomeHubs
Vertebrate Secretome Database
Gene Transcription Regulation Database
R-loopDB
ORTHOlogous MAmmalian Markers
BCL-2 Database
Selectome
HypoxiaDB
Bovine Genome Database
Pancreatic Expression database
Selective Targets database
DatabasE of genomiC varIation and Phenotype in Humans using Ensembl Resources
MUGEN mouse database
After:
NONCODE
Gene3D
neXtProt
WikiPathways
PRoteomics IDEntifications database
Reactome - a curated knowledgebase of biological pathways
Rat Genome Database
SUPERFAMILY
Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
The Consensus CDS
GeneNetwork
UniProt Knowledgebase
Xenopus laevis and tropicalis biology and genomics resource
Annmap
Database of Genomic Variants Archive
Medaka Expression Pattern Database
GeneWeaver
Image Data Resource
SSBD: Systems Science of Biological Dynamics
Microenvironment Perturbagen LINCS Center image server
Wikidata
REGULATOR
Ensembl Genomes
Orthologous MAtrix
Ensembl Bacteria
Ensembl Protists
Ensembl Plants
Ensembl Fungi
Ensembl Metazoa
GenomeHubs
Vertebrate Secretome Database
Gene Transcription Regulation Database
R-loopDB
ORTHOlogous MAmmalian Markers
BCL-2 Database
Selectome
HypoxiaDB
Bovine Genome Database
Pancreatic Expression database
Selective Targets database
DatabasE of genomiC varIation and Phenotype in Humans using Ensembl Resources
Added:
Removed:
MUGEN mouse database
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'The FAIRsharing Team' at 16:48, 03 Aug 2018 (approved):
'related_databases' has been modified:
Before:
NONCODE
Gene3D
neXtProt
WikiPathways
PRoteomics IDEntifications database
Reactome - a curated knowledgebase of biological pathways
Rat Genome Database
SUPERFAMILY
Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
The Consensus CDS
GeneNetwork
UniProt Knowledgebase
Xenopus laevis and tropicalis biology and genomics resource
Annmap
Database of Genomic Variants Archive
Medaka Expression Pattern Database
GeneWeaver
Image Data Resource
SSBD: Systems Science of Biological Dynamics
Microenvironment Perturbagen LINCS Center image server
Wikidata
REGULATOR
Ensembl Genomes
Orthologous MAtrix
Ensembl Bacteria
Ensembl Protists
Ensembl Plants
Ensembl Fungi
Ensembl Metazoa
GenomeHubs
Vertebrate Secretome Database
Gene Transcription Regulation Database
R-loopDB
ORTHOlogous MAmmalian Markers
BCL-2 Database
Selectome
HypoxiaDB
Bovine Genome Database
Pancreatic Expression database
Selective Targets database
After:
NONCODE
Gene3D
neXtProt
WikiPathways
PRoteomics IDEntifications database
Reactome - a curated knowledgebase of biological pathways
Rat Genome Database
SUPERFAMILY
Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
The Consensus CDS
GeneNetwork
UniProt Knowledgebase
Xenopus laevis and tropicalis biology and genomics resource
Annmap
Database of Genomic Variants Archive
Medaka Expression Pattern Database
GeneWeaver
Image Data Resource
SSBD: Systems Science of Biological Dynamics
Microenvironment Perturbagen LINCS Center image server
Wikidata
REGULATOR
Ensembl Genomes
Orthologous MAtrix
Ensembl Bacteria
Ensembl Protists
Ensembl Plants
Ensembl Fungi
Ensembl Metazoa
GenomeHubs
Vertebrate Secretome Database
Gene Transcription Regulation Database
R-loopDB
ORTHOlogous MAmmalian Markers
BCL-2 Database
Selectome
HypoxiaDB
Bovine Genome Database
Pancreatic Expression database
Selective Targets database
DatabasE of genomiC varIation and Phenotype in Humans using Ensembl Resources
Added:
DatabasE of genomiC varIation and Phenotype in Humans using Ensembl Resources
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'The FAIRsharing Team' at 16:47, 03 Aug 2018 (approved):
'related_databases' has been modified:
Before:
NONCODE
Gene3D
neXtProt
WikiPathways
PRoteomics IDEntifications database
Reactome - a curated knowledgebase of biological pathways
Rat Genome Database
SUPERFAMILY
Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
The Consensus CDS
GeneNetwork
UniProt Knowledgebase
Xenopus laevis and tropicalis biology and genomics resource
Annmap
Database of Genomic Variants Archive
Medaka Expression Pattern Database
GeneWeaver
Image Data Resource
SSBD: Systems Science of Biological Dynamics
Microenvironment Perturbagen LINCS Center image server
Wikidata
REGULATOR
Ensembl Genomes
Orthologous MAtrix
Ensembl Bacteria
Ensembl Protists
Ensembl Plants
Ensembl Fungi
Ensembl Metazoa
GenomeHubs
Vertebrate Secretome Database
Gene Transcription Regulation Database
R-loopDB
ORTHOlogous MAmmalian Markers
BCL-2 Database
Selectome
HypoxiaDB
Bovine Genome Database
Pancreatic Expression database
Selective Targets database
DatabasE of genomiC varIation and Phenotype in Humans using Ensembl Resources
After:
NONCODE
Gene3D
neXtProt
WikiPathways
PRoteomics IDEntifications database
Reactome - a curated knowledgebase of biological pathways
Rat Genome Database
SUPERFAMILY
Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
The Consensus CDS
GeneNetwork
UniProt Knowledgebase
Xenopus laevis and tropicalis biology and genomics resource
Annmap
Database of Genomic Variants Archive
Medaka Expression Pattern Database
GeneWeaver
Image Data Resource
SSBD: Systems Science of Biological Dynamics
Microenvironment Perturbagen LINCS Center image server
Wikidata
REGULATOR
Ensembl Genomes
Orthologous MAtrix
Ensembl Bacteria
Ensembl Protists
Ensembl Plants
Ensembl Fungi
Ensembl Metazoa
GenomeHubs
Vertebrate Secretome Database
Gene Transcription Regulation Database
R-loopDB
ORTHOlogous MAmmalian Markers
BCL-2 Database
Selectome
HypoxiaDB
Bovine Genome Database
Pancreatic Expression database
Selective Targets database
Added:
Removed:
DatabasE of genomiC varIation and Phenotype in Humans using Ensembl Resources
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'The FAIRsharing Team' at 11:28, 03 Aug 2018 (approved):
'related_databases' has been modified:
Before:
NONCODE
Gene3D
neXtProt
WikiPathways
PRoteomics IDEntifications database
Reactome - a curated knowledgebase of biological pathways
Rat Genome Database
SUPERFAMILY
Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
The Consensus CDS
GeneNetwork
UniProt Knowledgebase
Xenopus laevis and tropicalis biology and genomics resource
Annmap
Database of Genomic Variants Archive
Medaka Expression Pattern Database
GeneWeaver
Image Data Resource
SSBD: Systems Science of Biological Dynamics
Microenvironment Perturbagen LINCS Center image server
Wikidata
REGULATOR
Ensembl Genomes
Orthologous MAtrix
Ensembl Bacteria
Ensembl Protists
Ensembl Plants
Ensembl Fungi
Ensembl Metazoa
GenomeHubs
Vertebrate Secretome Database
Gene Transcription Regulation Database
R-loopDB
ORTHOlogous MAmmalian Markers
BCL-2 Database
Selectome
HypoxiaDB
Bovine Genome Database
After:
NONCODE
Gene3D
neXtProt
WikiPathways
PRoteomics IDEntifications database
Reactome - a curated knowledgebase of biological pathways
Rat Genome Database
SUPERFAMILY
Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
The Consensus CDS
GeneNetwork
UniProt Knowledgebase
Xenopus laevis and tropicalis biology and genomics resource
Annmap
Database of Genomic Variants Archive
Medaka Expression Pattern Database
GeneWeaver
Image Data Resource
SSBD: Systems Science of Biological Dynamics
Microenvironment Perturbagen LINCS Center image server
Wikidata
REGULATOR
Ensembl Genomes
Orthologous MAtrix
Ensembl Bacteria
Ensembl Protists
Ensembl Plants
Ensembl Fungi
Ensembl Metazoa
GenomeHubs
Vertebrate Secretome Database
Gene Transcription Regulation Database
R-loopDB
ORTHOlogous MAmmalian Markers
BCL-2 Database
Selectome
HypoxiaDB
Bovine Genome Database
Pancreatic Expression database
Added:
Pancreatic Expression database
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'The FAIRsharing Team' at 11:27, 03 Aug 2018 (approved):
'related_databases' has been modified:
Before:
NONCODE
Gene3D
neXtProt
WikiPathways
Rat Genome Database
SUPERFAMILY
Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
The Consensus CDS
GeneNetwork
UniProt Knowledgebase
Xenopus laevis and tropicalis biology and genomics resource
Annmap
Database of Genomic Variants Archive
Medaka Expression Pattern Database
GeneWeaver
Image Data Resource
SSBD: Systems Science of Biological Dynamics
Microenvironment Perturbagen LINCS Center image server
Wikidata
REGULATOR
Ensembl Genomes
Orthologous MAtrix
Ensembl Bacteria
Ensembl Protists
Ensembl Plants
Ensembl Fungi
Ensembl Metazoa
GenomeHubs
Vertebrate Secretome Database
Gene Transcription Regulation Database
R-loopDB
ORTHOlogous MAmmalian Markers
BCL-2 Database
Selectome
HypoxiaDB
Bovine Genome Database
Pancreatic Expression database
After:
NONCODE
Gene3D
neXtProt
WikiPathways
PRoteomics IDEntifications database
Reactome - a curated knowledgebase of biological pathways
Rat Genome Database
SUPERFAMILY
Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
The Consensus CDS
GeneNetwork
UniProt Knowledgebase
Xenopus laevis and tropicalis biology and genomics resource
Annmap
Database of Genomic Variants Archive
Medaka Expression Pattern Database
GeneWeaver
Image Data Resource
SSBD: Systems Science of Biological Dynamics
Microenvironment Perturbagen LINCS Center image server
Wikidata
REGULATOR
Ensembl Genomes
Orthologous MAtrix
Ensembl Bacteria
Ensembl Protists
Ensembl Plants
Ensembl Fungi
Ensembl Metazoa
GenomeHubs
Vertebrate Secretome Database
Gene Transcription Regulation Database
R-loopDB
ORTHOlogous MAmmalian Markers
BCL-2 Database
Selectome
HypoxiaDB
Bovine Genome Database
Added:
PRoteomics IDEntifications database
Reactome - a curated knowledgebase of biological pathways
Removed:
Pancreatic Expression database
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'The FAIRsharing Team' at 16:04, 01 Aug 2018 (approved):
'related_databases' has been modified:
Before:
NONCODE
neXtProt
WikiPathways
Rat Genome Database
SUPERFAMILY
The Consensus CDS
GeneNetwork
UniProt Knowledgebase
Xenopus laevis and tropicalis biology and genomics resource
Annmap
Database of Genomic Variants Archive
Medaka Expression Pattern Database
GeneWeaver
Image Data Resource
SSBD: Systems Science of Biological Dynamics
Microenvironment Perturbagen LINCS Center image server
Wikidata
REGULATOR
Ensembl Genomes
Orthologous MAtrix
Ensembl Bacteria
Ensembl Protists
Ensembl Plants
Ensembl Fungi
Ensembl Metazoa
GenomeHubs
Vertebrate Secretome Database
Gene Transcription Regulation Database
R-loopDB
ORTHOlogous MAmmalian Markers
BCL-2 Database
After:
NONCODE
neXtProt
WikiPathways
Rat Genome Database
SUPERFAMILY
Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
The Consensus CDS
GeneNetwork
UniProt Knowledgebase
Xenopus laevis and tropicalis biology and genomics resource
Annmap
Database of Genomic Variants Archive
Medaka Expression Pattern Database
GeneWeaver
Image Data Resource
SSBD: Systems Science of Biological Dynamics
Microenvironment Perturbagen LINCS Center image server
Wikidata
REGULATOR
Ensembl Genomes
Orthologous MAtrix
Ensembl Bacteria
Ensembl Protists
Ensembl Plants
Ensembl Fungi
Ensembl Metazoa
GenomeHubs
Vertebrate Secretome Database
Gene Transcription Regulation Database
R-loopDB
ORTHOlogous MAmmalian Markers
BCL-2 Database
Added:
Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'The FAIRsharing Team' at 08:26, 01 Aug 2018 (approved):
'related_databases' has been modified:
Before:
NONCODE
neXtProt
WikiPathways
The Consensus CDS
GeneNetwork
UniProt Knowledgebase
Xenopus laevis and tropicalis biology and genomics resource
Annmap
Database of Genomic Variants Archive
GeneWeaver
Image Data Resource
SSBD: Systems Science of Biological Dynamics
Microenvironment Perturbagen LINCS Center image server
Wikidata
REGULATOR
Ensembl Genomes
Orthologous MAtrix
Ensembl Bacteria
Ensembl Protists
Ensembl Plants
Ensembl Fungi
Ensembl Metazoa
GenomeHubs
Vertebrate Secretome Database
Gene Transcription Regulation Database
R-loopDB
After:
NONCODE
neXtProt
WikiPathways
Rat Genome Database
SUPERFAMILY
The Consensus CDS
GeneNetwork
UniProt Knowledgebase
Xenopus laevis and tropicalis biology and genomics resource
Annmap
Database of Genomic Variants Archive
Medaka Expression Pattern Database
GeneWeaver
Image Data Resource
SSBD: Systems Science of Biological Dynamics
Microenvironment Perturbagen LINCS Center image server
Wikidata
REGULATOR
Ensembl Genomes
Orthologous MAtrix
Ensembl Bacteria
Ensembl Protists
Ensembl Plants
Ensembl Fungi
Ensembl Metazoa
GenomeHubs
Vertebrate Secretome Database
Gene Transcription Regulation Database
R-loopDB
Added:
Rat Genome Database
SUPERFAMILY
Medaka Expression Pattern Database
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'The FAIRsharing Team' at 15:13, 31 Jul 2018 (approved):
'related_databases' has been modified:
Before:
NONCODE
neXtProt
WikiPathways
The Consensus CDS
GeneNetwork
UniProt Knowledgebase
Xenopus laevis and tropicalis biology and genomics resource
Annmap
Database of Genomic Variants Archive
GeneWeaver
Image Data Resource
SSBD: Systems Science of Biological Dynamics
Microenvironment Perturbagen LINCS Center image server
Wikidata
REGULATOR
Ensembl Genomes
Orthologous MAtrix
Ensembl Bacteria
Ensembl Protists
Ensembl Plants
Ensembl Fungi
Ensembl Metazoa
GenomeHubs
Vertebrate Secretome Database
After:
NONCODE
neXtProt
WikiPathways
The Consensus CDS
GeneNetwork
UniProt Knowledgebase
Xenopus laevis and tropicalis biology and genomics resource
Annmap
Database of Genomic Variants Archive
GeneWeaver
Image Data Resource
SSBD: Systems Science of Biological Dynamics
Microenvironment Perturbagen LINCS Center image server
Wikidata
REGULATOR
Ensembl Genomes
Orthologous MAtrix
Ensembl Bacteria
Ensembl Protists
Ensembl Plants
Ensembl Fungi
Ensembl Metazoa
GenomeHubs
Vertebrate Secretome Database
Gene Transcription Regulation Database
Added:
Gene Transcription Regulation Database
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'The FAIRsharing Team' at 15:12, 31 Jul 2018 (approved):
'related_databases' has been modified:
Before:
NONCODE
neXtProt
WikiPathways
The Consensus CDS
GeneNetwork
UniProt Knowledgebase
Xenopus laevis and tropicalis biology and genomics resource
Annmap
Database of Genomic Variants Archive
GeneWeaver
Image Data Resource
SSBD: Systems Science of Biological Dynamics
Microenvironment Perturbagen LINCS Center image server
Wikidata
REGULATOR
Ensembl Genomes
Orthologous MAtrix
Ensembl Bacteria
Ensembl Protists
Ensembl Plants
Ensembl Fungi
Ensembl Metazoa
GenomeHubs
Gene Transcription Regulation Database
After:
NONCODE
neXtProt
WikiPathways
The Consensus CDS
GeneNetwork
UniProt Knowledgebase
Xenopus laevis and tropicalis biology and genomics resource
Annmap
Database of Genomic Variants Archive
GeneWeaver
Image Data Resource
SSBD: Systems Science of Biological Dynamics
Microenvironment Perturbagen LINCS Center image server
Wikidata
REGULATOR
Ensembl Genomes
Orthologous MAtrix
Ensembl Bacteria
Ensembl Protists
Ensembl Plants
Ensembl Fungi
Ensembl Metazoa
GenomeHubs
Vertebrate Secretome Database
Added:
Vertebrate Secretome Database
Removed:
Gene Transcription Regulation Database
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'The FAIRsharing Team' at 14:28, 31 Jul 2018 (approved):
'organizations' has been modified:
Before:
The Wellcome Trust|https://wellcome.ac.uk/|Funds
European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Undefined
After:
The Wellcome Trust|https://wellcome.ac.uk/|Funds
European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Funds
Added:
European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Funds
Removed:
European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Undefined
'related_databases' has been modified:
Before:
NONCODE
neXtProt
WikiPathways
The Consensus CDS
GeneNetwork
UniProt Knowledgebase
Xenopus laevis and tropicalis biology and genomics resource
Annmap
Database of Genomic Variants Archive
GeneWeaver
Image Data Resource
SSBD: Systems Science of Biological Dynamics
Microenvironment Perturbagen LINCS Center image server
Wikidata
REGULATOR
Ensembl Genomes
Orthologous MAtrix
Ensembl Bacteria
Ensembl Protists
Ensembl Plants
Ensembl Fungi
Ensembl Metazoa
GenomeHubs
Vertebrate Secretome Database
After:
NONCODE
neXtProt
WikiPathways
The Consensus CDS
GeneNetwork
UniProt Knowledgebase
Xenopus laevis and tropicalis biology and genomics resource
Annmap
Database of Genomic Variants Archive
GeneWeaver
Image Data Resource
SSBD: Systems Science of Biological Dynamics
Microenvironment Perturbagen LINCS Center image server
Wikidata
REGULATOR
Ensembl Genomes
Orthologous MAtrix
Ensembl Bacteria
Ensembl Protists
Ensembl Plants
Ensembl Fungi
Ensembl Metazoa
GenomeHubs
Added:
Removed:
Vertebrate Secretome Database
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'The FAIRsharing Team' at 11:13, 31 Jul 2018 (approved):
'related_databases' has been modified:
Before:
NONCODE
neXtProt
WikiPathways
The Consensus CDS
GeneNetwork
UniProt Knowledgebase
Xenopus laevis and tropicalis biology and genomics resource
Annmap
Database of Genomic Variants Archive
GeneWeaver
Image Data Resource
SSBD: Systems Science of Biological Dynamics
Microenvironment Perturbagen LINCS Center image server
Wikidata
REGULATOR
Ensembl Genomes
Orthologous MAtrix
Ensembl Bacteria
Ensembl Protists
Ensembl Plants
Ensembl Fungi
Ensembl Metazoa
After:
NONCODE
neXtProt
WikiPathways
The Consensus CDS
GeneNetwork
UniProt Knowledgebase
Xenopus laevis and tropicalis biology and genomics resource
Annmap
Database of Genomic Variants Archive
GeneWeaver
Image Data Resource
SSBD: Systems Science of Biological Dynamics
Microenvironment Perturbagen LINCS Center image server
Wikidata
REGULATOR
Ensembl Genomes
Orthologous MAtrix
Ensembl Bacteria
Ensembl Protists
Ensembl Plants
Ensembl Fungi
Ensembl Metazoa
GenomeHubs
Added:
GenomeHubs
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'The FAIRsharing Team' at 11:12, 31 Jul 2018 (approved):
'related_databases' has been modified:
Before:
neXtProt
WikiPathways
GeneNetwork
UniProt Knowledgebase
Annmap
Database of Genomic Variants Archive
GeneWeaver
Image Data Resource
SSBD: Systems Science of Biological Dynamics
Microenvironment Perturbagen LINCS Center image server
Wikidata
REGULATOR
Ensembl Genomes
Orthologous MAtrix
Ensembl Bacteria
Ensembl Protists
Ensembl Plants
Ensembl Fungi
Ensembl Metazoa
GenomeHubs
After:
NONCODE
neXtProt
WikiPathways
The Consensus CDS
GeneNetwork
UniProt Knowledgebase
Xenopus laevis and tropicalis biology and genomics resource
Annmap
Database of Genomic Variants Archive
GeneWeaver
Image Data Resource
SSBD: Systems Science of Biological Dynamics
Microenvironment Perturbagen LINCS Center image server
Wikidata
REGULATOR
Ensembl Genomes
Orthologous MAtrix
Ensembl Bacteria
Ensembl Protists
Ensembl Plants
Ensembl Fungi
Ensembl Metazoa
Added:
NONCODE
The Consensus CDS
Xenopus laevis and tropicalis biology and genomics resource
Removed:
GenomeHubs
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'The FAIRsharing Team' at 10:10, 31 Jul 2018 (approved):
'domains' has been modified:
Before:
Biomedical Science
Genome
Life Science
After:
Biomedical Science
Gene prediction
Genome
Genome alignment
Genome annotation
Genome visualisation
Genomic assembly
Life Science
Reference genome
Added:
Gene prediction
Genome alignment
Genome annotation
Genome visualisation
Genomic assembly
Reference genome
Removed:
'contact' has been modified:
Before:
After: Help Desk
'taxonomies' has been modified:
Before:
Chordata
Vertebrata
After:
Caenorhabditis elegans
Chordata
Drosophila melanogaster
Saccharomyces cerevisiae
Added:
Caenorhabditis elegans
Drosophila melanogaster
Saccharomyces cerevisiae
Removed:
Vertebrata
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'Ensembl' at 11:32, 27 Mar 2017 (approved):
'description' has been modified:
Before: The Ensembl project is based at the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI). It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries.
After: The Ensembl project is based at the European Molecular Biology Laboratory's European Bioinformatics Institute (EMBL-EBI). It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries.
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'The FAIRsharing Team' at 13:22, 22 Mar 2017 (approved):
'description' has been modified:
Before: The Ensembl project is based at the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI). It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries;
After: The Ensembl project is based at the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI). It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries.
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'The FAIRsharing Team' at 13:21, 22 Mar 2017 (approved):
'description' has been modified:
Before: The Ensembl project is based at the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI). It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries.
After: The Ensembl project is based at the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI). It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries;
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'The FAIRsharing Team' at 13:17, 22 Mar 2017 (approved):
'description' has been modified:
Before: The Ensembl project is based at the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI). It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries.
After: The Ensembl project is based at the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI). It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries....
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'The FAIRsharing Team' at 12:55, 22 Mar 2017 (approved):
'description' has been modified:
Before: The Ensembl project is a joint effort of the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI) and the Wellcome Trust Sanger Institute. It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries.
After: The Ensembl project is based at the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI). It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries.
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'The FAIRsharing Team' at 12:48, 22 Mar 2017 (approved):
'description' has been modified:
Before: The Ensembl project is a joint effort of the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI) and the Wellcome Trust Sanger Institute. It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries.
After: The Ensembl project is based at the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI). It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries.
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'The FAIRsharing Team' at 12:40, 22 Mar 2017 (approved):
'description' has been modified:
Before: The Ensembl project is a joint effort of the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI) and the Wellcome Trust Sanger Institute. It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries.
After: The Ensembl project is based at the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI). It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries.
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'The FAIRsharing Team' at 12:32, 22 Mar 2017 (approved):
'description' has been modified:
Before: The Ensembl project is a joint effort of the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI) and the Wellcome Trust Sanger Institute. It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries.
After: The Ensembl project is based at the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI). It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries.
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'The FAIRsharing Team' at 12:14, 22 Mar 2017 (approved):
'description' has been modified:
Before: The Ensembl project is a joint effort of the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI) and the Wellcome Trust Sanger Institute. It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries.
After: The Ensembl project is based at the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI). It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries.
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'Ensembl' at 08:53, 22 Mar 2017 (approved):
'description' has been modified:
Before: The Ensembl project is a joint effort of the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI) and the Wellcome Trust Sanger Institute. It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries.
After: The Ensembl project is based at the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI). It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries.
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'Ensembl' at 08:53, 22 Mar 2017 (approved):
'description' has been modified:
Before: The Ensembl project is a joint effort of the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI) and the Wellcome Trust Sanger Institute. It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries.
After: The Ensembl project is based at the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI). It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries.
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'Ensembl' at 15:43, 21 Mar 2017 (approved):
'description' has been modified:
Before: The Ensembl project is a joint effort of the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI) and the Wellcome Trust Sanger Institute. It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries.
After: The Ensembl project is based at the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI). It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries.
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'Ensembl' at 15:43, 21 Mar 2017 (approved):
'description' has been modified:
Before: The Ensembl project is a joint effort of the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI) and the Wellcome Trust Sanger Institute. It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries.
After: The Ensembl project is based at the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI). It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries.
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'Ensembl' at 14:53, 21 Mar 2017 (approved):
'description' has been modified:
Before: The Ensembl project is a joint effort of the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI) and the Wellcome Trust Sanger Institute. It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries.
After: The Ensembl project is based at the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI). It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries.
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'Ensembl' at 14:52, 21 Mar 2017 (approved):
'description' has been modified:
Before: The Ensembl project is a joint effort of the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI) and the Wellcome Trust Sanger Institute. It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries.
After: The Ensembl project is based at the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI). It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries.
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'Ensembl' at 14:52, 21 Mar 2017 (approved):
'description' has been modified:
Before: The Ensembl project is a joint effort of the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI) and the Wellcome Trust Sanger Institute. It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries.
After: The Ensembl project is based at the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI). It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries.
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'Ensembl' at 09:04, 21 Mar 2017 (approved):
'description' has been modified:
Before: The Ensembl project is a joint effort of the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI) and the Wellcome Trust Sanger Institute. It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries.
After: The Ensembl project is based at the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI). It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries. Support links have changed: Previous values: http://www.ensembl.org/Help/Faq http://www.ensembl.org/Help/Contact helpdesk@ensembl.org http://www.ensembl.info http://lists.ensembl.org/mailman/listinfo/dev http://www.ensembl.org/info/index.html https://tess.elixir-uk.org/materials/ensembl-browsing-chordate-genomes https://tess.elixir-uk.org/materials/ensembl-filmed-api-workshop https://tess.elixir-uk.org/materials/ensembl-filmed-browser-workshop https://tess.elixir-uk.org/materials/ensembl-quick-tour https://tess.elixir-uk.org/materials/browsing-plant-and-pathogen-genomes-with-ensembl-genomes http://www.ensembl.org/info/website/tutorials/index.html https://tess.elixir-uk.org/materials/ensembl-browser-webinar-series-2016 https://tess.elixir-uk.org/materials/ensembl-genomes-non-chordates-quick-tour https://tess.elixir-uk.org/materials/ensembl-tools-webinar https://tess.elixir-uk.org/materials/ensembl-variant-effect-predictor-vep-webinar @ensembl New values: http://www.ensembl.org/Help/Faq http://www.ensembl.org/Help/Contact helpdesk@ensembl.org http://www.ensembl.info http://lists.ensembl.org/mailman/listinfo/dev http://www.ensembl.org/info/index.html https://tess.elixir-uk.org/materials/ensembl-filmed-api-workshop https://tess.elixir-uk.org/materials/ensembl-filmed-browser-workshop https://tess.elixir-uk.org/materials/ensembl-quick-tour https://tess.elixir-uk.org/materials/browsing-plant-and-pathogen-genomes-with-ensembl-genomes https://tess.elixir-uk.org/materials/ensembl-browser-webinar-series-2016 http://www.ensembl.org/info/website/tutorials/index.html https://tess.elixir-uk.org/materials/ensembl-genomes-non-chordates-quick-tour https://tess.elixir-uk.org/materials/ensembl-tools-webinar https://tess.elixir-uk.org/materials/ensembl-variant-effect-predictor-vep-webinar https://tess.elixir-uk.org/materials/ensembl-browsing-chordate-genomes @ensembl
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'Ensembl' at 09:02, 21 Mar 2017 (approved):
'description' has been modified:
Before: The Ensembl project is a joint effort of the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI) and the Wellcome Trust Sanger Institute. It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries.
After: The Ensembl project is based at the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI). It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries.
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'Ensembl' at 08:56, 21 Mar 2017 (approved):
'description' has been modified:
Before: The Ensembl project is a joint effort of the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI) and the Wellcome Trust Sanger Institute. It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries.
After: The Ensembl project is based at the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI). It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries. Domain list has changed: Previous values: Biomedical Science|None| Genome|property|http://purl.org/obo/owl/SO#SO_0001026 Life Science|domain| New values: Biomedical Science|None| Genome|property|http://purl.org/obo/owl/SO#SO_0001026 Life Scienc|None| Taxonomy list has changed: Previous values: Vertebrata|http://identifiers.org/taxonomy/7742?resource=MIR:00100019 New values: Chordata|http://identifiers.org/taxonomy/7711 Countries have changed: Previous values: European Union New values: European Union United Kingdom Organisations have changed: Previous values: European Molecular Biology Laboratory (EMBL)|Heidelberg|Germany Swiss Institute of Bioinformatics (SIB)|Switzerland Wellcome Trust Sanger Institute|Wellcome Trust Genome Campus|Cambridge|UK New values: European Molecular Biology Laboratory (EMBL)|Heidelberg|Germany
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'Ensembl' at 08:55, 21 Mar 2017 (approved):
'description' has been modified:
Before: The Ensembl project is a joint effort of the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI) and the Wellcome Trust Sanger Institute. It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries.
After: The Ensembl project is based at the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI). It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries. Domain list has changed: Previous values: Biomedical Science|None| Genome|property|http://purl.org/obo/owl/SO#SO_0001026 Life Science|domain| New values: Biomedical Science|None| Genome|property|http://purl.org/obo/owl/SO#SO_0001026 Life Scienc|None| Taxonomy list has changed: Previous values: Vertebrata|http://identifiers.org/taxonomy/7742?resource=MIR:00100019 New values: Chordata|http://identifiers.org/taxonomy/7711 Countries have changed: Previous values: European Union New values: European Union United Kingdom Organisations have changed: Previous values: European Molecular Biology Laboratory (EMBL)|Heidelberg|Germany Swiss Institute of Bioinformatics (SIB)|Switzerland Wellcome Trust Sanger Institute|Wellcome Trust Genome Campus|Cambridge|UK New values: European Molecular Biology Laboratory (EMBL)|Heidelberg|Germany
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'Ensembl' at 08:53, 21 Mar 2017 (approved):
'description' has been modified:
Before: The Ensembl project is a joint effort of the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI) and the Wellcome Trust Sanger Institute. It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries.
After: The Ensembl project is based at the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI). It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries. Taxonomy list has changed: Previous values: Vertebrata|http://identifiers.org/taxonomy/7742?resource=MIR:00100019 New values: Chordata|http://identifiers.org/taxonomy/7711 Countries have changed: Previous values: European Union New values: European Union United Kingdom Publication List has changed: Previous values: Ensembl 2015 New values: Ensembl 2015 The Ensembl REST API: Ensembl Data for Any Language. The Ensembl gene annotation system. The ensembl regulatory build. The Ensembl Variant Effect Predictor. Ensembl 2016. Ensembl regulation resources. Ensembl comparative genomics resources. Incorporating RNA-seq data into the zebrafish Ensembl genebuild. The Ensembl REST API: Ensembl Data for Any Language. The ensembl regulatory build. WiggleTools: parallel processing of large collections of genome-wide datasets for visualization and statistical analysis. Ensembl 2009. Ensembl 2006. Ensembl 2007. Ensembl 2008. Ensembl 2014. Ensembl 2013. Ensembl 2012. Ensembl BioMarts: a hub for data retrieval across taxonomic space. Ensembl 2011. Genome-wide nucleotide-level mammalian ancestor reconstruction. Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor. A database and API for variation|dense genotyping and resequencing data. eHive: an artificial intelligence workflow system for genomic analysis. Ensembl variation resources. Ensembl's 10th year. GENCODE: the reference human genome annotation for The ENCODE Project. The Ensembl genome database project. EnsemblCompara GeneTrees: Complete|duplication-aware phylogenetic trees in vertebrates. Ensembl 2002: accommodating comparative genomics. The Ensembl automatic gene annotation system. ESTGenes: alternative splicing from ESTs in Ensembl. The Ensembl analysis pipeline. Ensembl 2002: accommodating comparative genomics. Ensembl 2005. Ensembl 2006. The Ensembl core software libraries. The Ensembl Web site: mechanics of a genome browser. Genome information resources - developments at Ensembl. The Ensembl computing architecture. Disease and phenotype data at Ensembl. Genome browsing with Ensembl: a practical overview. Touring Ensembl: a practical guide to genome browsing. TranscriptSNPView: a genome-wide catalog of mouse coding variation. Ensembl 2017. Organisations have changed: Previous values: European Molecular Biology Laboratory (EMBL)|Heidelberg|Germany Swiss Institute of Bioinformatics (SIB)|Switzerland Wellcome Trust Sanger Institute|Wellcome Trust Genome Campus|Cambridge|UK New values: European Molecular Biology Laboratory (EMBL)|Heidelberg|Germany
Edits to 'https://fairsharing.org/FAIRsharing.fx0mw7' by 'Ensembl' at 08:52, 21 Mar 2017 (approved):
'description' has been modified:
Before: The Ensembl project is a joint effort of the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI) and the Wellcome Trust Sanger Institute. It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries.
After: The Ensembl project is based at the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI). It provides one of the most comprehensive and integrated resources of genomic data, which can be accessed through the web (www.ensembl.org) and through BioMart, FTP, Perl APIs, REST API and MySQL queries. Taxonomy list has changed: Previous values: Vertebrata|http://identifiers.org/taxonomy/7742?resource=MIR:00100019 New values: Chordata|http://identifiers.org/taxonomy/7711 Countries have changed: Previous values: European Union New values: European Union United Kingdom Publication List has changed: Previous values: Ensembl 2015 New values: Ensembl 2015 The Ensembl REST API: Ensembl Data for Any Language. The Ensembl gene annotation system. The ensembl regulatory build. The Ensembl Variant Effect Predictor. Ensembl 2016. Ensembl regulation resources. Ensembl comparative genomics resources. Incorporating RNA-seq data into the zebrafish Ensembl genebuild. The Ensembl REST API: Ensembl Data for Any Language. The ensembl regulatory build. WiggleTools: parallel processing of large collections of genome-wide datasets for visualization and statistical analysis. Ensembl 2009. Ensembl 2006. Ensembl 2007. Ensembl 2008. Ensembl 2014. Ensembl 2013. Ensembl 2012. Ensembl BioMarts: a hub for data retrieval across taxonomic space. Ensembl 2011. Genome-wide nucleotide-level mammalian ancestor reconstruction. Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor. A database and API for variation|dense genotyping and resequencing data. eHive: an artificial intelligence workflow system for genomic analysis. Ensembl variation resources. Ensembl's 10th year. GENCODE: the reference human genome annotation for The ENCODE Project. The Ensembl genome database project. EnsemblCompara GeneTrees: Complete|duplication-aware phylogenetic trees in vertebrates. Ensembl 2002: accommodating comparative genomics. The Ensembl automatic gene annotation system. ESTGenes: alternative splicing from ESTs in Ensembl. The Ensembl analysis pipeline. Ensembl 2002: accommodating comparative genomics. Ensembl 2005. Ensembl 2006. The Ensembl core software libraries. The Ensembl Web site: mechanics of a genome browser. Genome information resources - developments at Ensembl. The Ensembl computing architecture. Disease and phenotype data at Ensembl. Genome browsing with Ensembl: a practical overview. Touring Ensembl: a practical guide to genome browsing. TranscriptSNPView: a genome-wide catalog of mouse coding variation. Ensembl 2017. Organisations have changed: Previous values: European Molecular Biology Laboratory (EMBL)|Heidelberg|Germany Swiss Institute of Bioinformatics (SIB)|Switzerland Wellcome Trust Sanger Institute|Wellcome Trust Genome Campus|Cambridge|UK New values: European Molecular Biology Laboratory (EMBL)|Heidelberg|Germany
Ensembl
