Edits to 'https://fairsharing.org/FAIRsharing.j8g2cv' by 'The FAIRsharing Team' at 12:11, 22 Mar 2021 (approved):
'organizations' has been modified:
Before:
European Commission FP7|https://ec.europa.eu/research/fp7/index_en.cfm|Funds
European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Undefined
European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
After:
European Commission FP7|https://ec.europa.eu/research/fp7/index_en.cfm|Funds
European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Funds
Added:
European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Funds
Removed:
European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Undefined
'related_databases' has been modified:
Before:
Ensembl
Ensembl Genomes
The Triticeae Toolbox
Planteome
Brassica Information Portal
RNAcentral
After:
GenBank
DNA Data Bank of Japan
Gramene: A curated, open-source, integrated data resource for comparative functional genomics in plants
European Nucleotide Archive
Ensembl
Ensembl Genomes
The Triticeae Toolbox
Planteome
Brassica Information Portal
RNAcentral
Added:
GenBank
DNA Data Bank of Japan
Gramene: A curated, open-source, integrated data resource for comparative functional genomics in plants
European Nucleotide Archive
Removed:
'supportLinks' has been modified:
Before:
blog|http://www.ensembl.info/
email|helpdesk@ensemblgenomes.org
mailing list|http://lists.ensembl.org/mailman/listinfo/dev
online documentation|http://ensemblgenomes.org/info
twitter|@ensemblgenomes
After:
blog|https://www.ensembl.info/
email|helpdesk@ensemblgenomes.org
help|https://plants.ensembl.org/info/
mailing list|http://lists.ensembl.org/mailman/listinfo/dev
twitter|@ensemblgenomes
Added:
blog|https://www.ensembl.info/
help|https://plants.ensembl.org/info/
Removed:
blog|http://www.ensembl.info/
online documentation|http://ensemblgenomes.org/info
'tools' has been modified:
Before:
Blast||http://plants.ensembl.org/Multi/Tools/Blast?db=core
Biomart||http://plants.ensembl.org/biomart/martview/a034175799a31fe8686d2133397b1497
Phmmer||http://plants.ensembl.org/hmmer/index.html
Assembly Converter||http://plants.ensembl.org/Oryza_sativa/Tools/AssemblyConverter?db=core
ID History Converter||http://plants.ensembl.org/Oryza_sativa/Tools/IDMapper?db=core
After:
Variant Effect Predictor (Download Script)||https://github.com/Ensembl/ensembl-tools/archive/release/103.zip
ID History Converter (Download Script)||https://github.com/Ensembl/ensembl-tools/tree/release/103/scripts/id_history_converter
Added:
Variant Effect Predictor (Download Script)||https://github.com/Ensembl/ensembl-tools/archive/release/103.zip
ID History Converter (Download Script)||https://github.com/Ensembl/ensembl-tools/tree/release/103/scripts/id_history_converter
Removed:
Blast||http://plants.ensembl.org/Multi/Tools/Blast?db=core
Biomart||http://plants.ensembl.org/biomart/martview/a034175799a31fe8686d2133397b1497
Phmmer||http://plants.ensembl.org/hmmer/index.html
Assembly Converter||http://plants.ensembl.org/Oryza_sativa/Tools/AssemblyConverter?db=core
ID History Converter||http://plants.ensembl.org/Oryza_sativa/Tools/IDMapper?db=core
'onto_disciplines' has been modified:
Before:
Comparative Genomics
Life Science
After:
Comparative Genomics
Genomics
Added:
Genomics
Removed:
Life Science
'dataProcesses' has been modified:
Before:
FTP API download, data access, ftp://ftp.ensembl.org/pub/ensembl-api.tar.gz
Download, data access, http://plants.ensembl.org/info/website/ftp/index.html
Browse, data access, http://plants.ensembl.org/species.html
Search, data access, http://plants.ensembl.org/index.html
After:
Variant Effect Predictor, data access, https://plants.ensembl.org/Oryza_sativa/Tools/VEP
Download, data access, https://plants.ensembl.org/info/data/ftp/index.html
Browse, data access, https://plants.ensembl.org/species.html
Search, data access, https://plants.ensembl.org/index.html
HMMER, data access, https://plants.ensembl.org/hmmer
Identify Sequences with BLAST, data access, https://plants.ensembl.org/Oryza_sativa/Tools/Blast
Assembly Converter, data access, https://plants.ensembl.org/Oryza_sativa/Tools/AssemblyConverter
ID History Converter, data access, https://plants.ensembl.org/Oryza_sativa/Tools/IDMapper
BioMart, data access, https://plants.ensembl.org/biomart/martview
Added:
Variant Effect Predictor, data access, https://plants.ensembl.org/Oryza_sativa/Tools/VEP
Download, data access, https://plants.ensembl.org/info/data/ftp/index.html
Browse, data access, https://plants.ensembl.org/species.html
Search, data access, https://plants.ensembl.org/index.html
HMMER, data access, https://plants.ensembl.org/hmmer
Identify Sequences with BLAST, data access, https://plants.ensembl.org/Oryza_sativa/Tools/Blast
Assembly Converter, data access, https://plants.ensembl.org/Oryza_sativa/Tools/AssemblyConverter
ID History Converter, data access, https://plants.ensembl.org/Oryza_sativa/Tools/IDMapper
BioMart, data access, https://plants.ensembl.org/biomart/martview
Removed:
FTP API download, data access, ftp://ftp.ensembl.org/pub/ensembl-api.tar.gz
Download, data access, http://plants.ensembl.org/info/website/ftp/index.html
Browse, data access, http://plants.ensembl.org/species.html
Search, data access, http://plants.ensembl.org/index.html
'onto_domains' has been modified:
Before:
DNA sequence
Genome annotation
After:
DNA sequence
Genome annotation
genome
Added:
genome
Removed:
'accessPoints' has been modified:
Before:
Other|https://github.com/Ensembl|Ensembl Perl API
REST|http://rest.ensembl.org/|Ensembl Genomes REST API Endpoints
After:
Other|https://github.com/Ensembl|Ensembl Perl API
REST|https://rest.ensembl.org/|Ensembl Genomes REST API Endpoints
Added:
REST|https://rest.ensembl.org/|Ensembl Genomes REST API Endpoints
Removed:
REST|http://rest.ensembl.org/|Ensembl Genomes REST API Endpoints
'homepage' has been modified:
Before: http://plants.ensembl.org/index.html
After: https://plants.ensembl.org/index.html
Edits to 'https://fairsharing.org/FAIRsharing.j8g2cv' by 'ensembl_fair' at 16:01, 21 Jul 2020 (approved):
'organizations' has been modified:
Before:
European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Undefined
European Commission FP7|https://ec.europa.eu/research/fp7/index_en.cfm|Funds
After:
European Commission FP7|https://ec.europa.eu/research/fp7/index_en.cfm|Funds
European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Undefined
European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
Added:
European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
Removed:
'description' has been modified:
Before: A new genome assembly of Triticum aestivum cv. Chinese Spring is now available in Ensembl Plants. The assembly (TGACv1) and it's accompanying annotation was produced by the Earlham Institute, formerly The Centre for Genome Analysis (TGAC), as part of the Triticeae Genomics for Sustainable Agriculture project.
After: Ensembl Plants holds the genomes of plants of significant interest. These range from those of agricultural importance, those which support primary research and of environmental interest. Ensembl Plants datasets are constructed in a direct collaboration with the Gramene resource. The resource holds the genomes of wheat, rice, corn and mouse ear cress amongst others.
'licences' has been modified:
Before:
EMBL-EBI Terms of Use|http://www.ebi.ac.uk/about/terms-of-use|Data
After:
EMBL-EBI Terms of Use|http://www.ebi.ac.uk/about/terms-of-use|Data
Apache License 2.0|http://www.apache.org/licenses/LICENSE-2.0|Software
Added:
Apache License 2.0|http://www.apache.org/licenses/LICENSE-2.0|Software
Removed:
'dataProcesses' has been modified:
Before:
FTP download, data access, ftp://ftp.ensembl.org/pub/ensembl-api.tar.gz
Download, data access, http://plants.ensembl.org/info/website/ftp/index.html
Browse, data access, http://plants.ensembl.org/species.html
Search, data access, http://plants.ensembl.org/index.html
After:
FTP API download, data access, ftp://ftp.ensembl.org/pub/ensembl-api.tar.gz
Download, data access, http://plants.ensembl.org/info/website/ftp/index.html
Browse, data access, http://plants.ensembl.org/species.html
Search, data access, http://plants.ensembl.org/index.html
Added:
FTP API download, data access, ftp://ftp.ensembl.org/pub/ensembl-api.tar.gz
Removed:
FTP download, data access, ftp://ftp.ensembl.org/pub/ensembl-api.tar.gz
'contactEmail' has been modified:
Before: pkersey@ebi.ac.uk
After: flicek@ebi.ac.uk
'contact' has been modified:
Before: Paul Julian Kersey
After: Paul Flicek
'publications' has been modified:
Before:
Ensembl Genomes 2016: more genomes, more complexity.|Kersey PJ,Allen JE,Armean I,Boddu S,Bolt BJ,Carvalho-Silva D,Christensen M,Davis P,Falin LJ,Grabmueller C,Humphrey J,Kerhornou A,Khobova J,Aranganathan NK,Langridge N,Lowy E,McDowall MD,Maheswari U,Nuhn M,Ong CK,Overduin B,Paulini M,Pedro H,Perry E,Spudich G,Tapanari E,Walts B,Williams G,Tello-Ruiz M,Stein J,Wei S,Ware D,Bolser DM,Howe KL,Kulesha E,Lawson D,Maslen G,Staines DM|Nucleic Acids Res|2015
After:
Ensembl Genomes 2016: more genomes, more complexity.|Kersey PJ et al.|Nucleic Acids Res|2015
Ensembl Genomes 2020-enabling non-vertebrate genomic research.|Howe KL et al.|Nucleic Acids Res|2019
Added:
Ensembl Genomes 2016: more genomes, more complexity.|Kersey PJ et al.|Nucleic Acids Res|2015
Ensembl Genomes 2020-enabling non-vertebrate genomic research.|Howe KL et al.|Nucleic Acids Res|2019
Removed:
Ensembl Genomes 2016: more genomes, more complexity.|Kersey PJ,Allen JE,Armean I,Boddu S,Bolt BJ,Carvalho-Silva D,Christensen M,Davis P,Falin LJ,Grabmueller C,Humphrey J,Kerhornou A,Khobova J,Aranganathan NK,Langridge N,Lowy E,McDowall MD,Maheswari U,Nuhn M,Ong CK,Overduin B,Paulini M,Pedro H,Perry E,Spudich G,Tapanari E,Walts B,Williams G,Tello-Ruiz M,Stein J,Wei S,Ware D,Bolser DM,Howe KL,Kulesha E,Lawson D,Maslen G,Staines DM|Nucleic Acids Res|2015
'accessPoints' has been modified:
Before:
Other|https://github.com/Ensembl|Ensembl Perl API
Other|ftp://ftp.ensemblgenomes.org/pub/release-34/virtual_machines|Ensembl Genomes Virtual Machine
REST|http://rest.ensemblgenomes.org/|Ensembl Genomes REST API Endpoints
After:
Other|https://github.com/Ensembl|Ensembl Perl API
REST|http://rest.ensembl.org/|Ensembl Genomes REST API Endpoints
Added:
REST|http://rest.ensembl.org/|Ensembl Genomes REST API Endpoints
Removed:
Other|ftp://ftp.ensemblgenomes.org/pub/release-34/virtual_machines|Ensembl Genomes Virtual Machine
REST|http://rest.ensemblgenomes.org/|Ensembl Genomes REST API Endpoints
Edits to 'https://fairsharing.org/FAIRsharing.j8g2cv' by 'The FAIRsharing Team' at 10:50, 21 Nov 2018 (approved):
'domains' has been modified:
Before:
Comparative genomics
Genome annotation
Life Science
After:
Comparative genomics
DNA sequence data
Genome annotation
Life Science
Added:
DNA sequence data
Removed:
Ensembl Plants
