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3D interacting domains

Abbreviation:3DID

General Information

The database of 3D Interaction Domains (3did) is a collection of domain-domain interactions in proteins for which high-resolution three-dimensional structures are known. 3did exploits structural information to provide critical molecular details necessary for understanding how interactions occur.

Homepage http://3did.irbbarcelona.org/

Countries that developed this resource Spain

Created in 2010

Taxonomic range

All

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: 3DID; 3D interacting domains; DOI: https://doi.org/10.25504/FAIRsharing.jptb1m; Last edited: Jan. 8, 2019, 1:19 p.m.; Last accessed: Jul 10 2020 3:52 a.m.

Record updated: Jan. 11, 2018, 7:51 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.jptb1m' by 'The FAIRsharing Team' at 19:51, 11 Jan 2018 (approved):

	'miriam_url' has been modified:
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Edits to 'https://fairsharing.org/FAIRsharing.jptb1m' by 'The FAIRsharing Team' at 18:02, 02 Sep 2016 (approved):

	'year' has been modified:
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		After: 2010 Support links have changed:  Previous values: 3did@irbbarcelona.org http://3did.irbbarcelona.org/help.php New values:  3did@irbbarcelona.org 3did@irbbarcelona.org Grants have changed:  Previous values: 223101(AntiPathoGN) 306240 (SyStemAge) BIO2007-62426 BIO2010-22073 PSS-010000-2009 New values:  BIO2010-22073 306240 (SyStemAge) BIO2007-62426 PSS-010000-2009 223101(AntiPathoGN)

Edits to 'https://fairsharing.org/FAIRsharing.jptb1m' by 'The FAIRsharing Team' at 18:01, 02 Sep 2016 (approved):

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			Patrick Aloy
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Edits to 'https://fairsharing.org/FAIRsharing.jptb1m' by 'The FAIRsharing Team' at 17:59, 02 Sep 2016 (approved):

	'description' has been modified:
		Before: The database of 3D Interaction Domains (3did) is a collection of domain-domain interactions in proteins for which high-resolution three-dimensional structures are known. 3did exploits structural information to provide critical molecular details necessary for understanding how interactions occur
		After: The database of 3D Interaction Domains (3did) is a collection of domain-domain interactions in proteins for which high-resolution three-dimensional structures are known. 3did exploits structural information to provide critical molecular details necessary for understanding how interactions occur. Domain list has changed:  Previous values: Interactions|| Life Science|domain| Protein|material|http://purl.org/obo/owl/GO#GO_0003675 Structure data|information content entity|http://purl.org/obo/owl/PATO#PATO_0000141 New values:  Interactions|| Life Science|domain| Protein|material|http://purl.org/obo/owl/GO#GO_0003675 Structure data|information content entity|http://purl.org/obo/owl/PATO#PATO_0000141 Protein 3D structure|| Publication List has changed:  Previous values: 3did: identification and classification of domain-based interactions of known three-dimensional structure. New values:  3did: identification and classification of domain-based interactions of known three-dimensional structure. 3did: a catalog of domain-based interactions of known three-dimensional structure. Support links have changed:  Previous values: New values:  http://3did.irbbarcelona.org/help.php Data processes have changed:  Previous values: Download New values:  download search browse Licenses have changed:  Previous values: Attribution required Flow Repository Open access attribution required free for non-commercial use New values:  Attribution required Flow Repository Open access free for non-commercial use Grants have changed:  Previous values: New values:  BIO2010-22073 306240 (SyStemAge) BIO2007-62426 PSS-010000-2009 223101(AntiPathoGN)

In Collections

RDA Covid-19 WG Resources

Support

General

support email

3did@irbbarcelona.org

Additional Information

Contact

Patrick Aloy ORCID

Tools

http://3did.irbbarcelona.org/iquery.html

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Attribution required
Publicly available data

Data Access

download	http://3did.irbbarcelona.org/download.php
search	http://3did.irbbarcelona.org/search.php
browse	http://3did.irbbarcelona.org/browse.php

Publications

3did: identification and classification of domain-based interactions of known three-dimensional structure.

Stein A., Céol A., Aloy P.,
Nucleic Acids Res. 2011

View Paper (PubMed) View Publication

3did: a catalog of domain-based interactions of known three-dimensional structure.

Mosca R, Ceol A, Stein A, Olivella R, Aloy P
Nucleic Acids Res 2013

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Gene Ontology

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Worldwide Protein Data Bank

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is in need of a maintainer. If you login, you'll be able to claim this record.

Funds

The Spanish Ministerio de Ciencia e Innovacion (Government body)
European Commission under FP7 Grant Agreement (Government body)
European Commission FP7 (Government body)
The Spanish Ministerio de Ciencia e Innovacin

Maintains

Structural Bioinformatics and Network Biology Group (Lab)

Grant Number(s)

223101(AntiPathoGN) (European Commission FP7)
306240 (SyStemAge) (European Commission FP7)
BIO2007-62426 (The Spanish Ministerio de Ciencia e Innovacion)
BIO2010-22073 (The Spanish Ministerio de Ciencia e Innovacion)
PSS-010000-2009 (The Spanish Ministerio de Ciencia e Innovacion)

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