Update in progress: note to all users. FAIRsharing is always available for you to search and discover databases, standards and data policies. However, for producers of these resources who maintain or wish to add new records, please note that editing is disabled until September while we migrate our data to our new, improved system. Read our blog post or get in touch with us for more details.

3D interacting domains

Abbreviation:3DID

General Information

The database of 3D Interaction Domains (3did) is a collection of domain-domain interactions in proteins for which high-resolution three-dimensional structures are known. 3did exploits structural information to provide critical molecular details necessary for understanding how interactions occur.

Homepage http://3did.irbbarcelona.org/

Countries that developed this resource Spain

Created in 2010

Taxonomic range

All

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: 3DID; 3D interacting domains; DOI: https://doi.org/10.25504/FAIRsharing.jptb1m; Last edited: April 26, 2021, 3:02 p.m.; Last accessed: Jul 29 2021 6:29 a.m.

Record updated: April 20, 2021, 11:52 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.jptb1m' by 'The FAIRsharing Team' at 11:52, 20 Apr 2021 (approved):

	'licences' has been modified:
		Before:
			Attribution required||Data
			Publicly available data||Data
		After:
			3D interacting domains Attribution required|https://3did.irbbarcelona.org/|Data
		Added:
			3D interacting domains Attribution required|https://3did.irbbarcelona.org/|Data
		Removed:
			Attribution required||Data
			Publicly available data||Data

	'organizations' has been modified:
		Before:
			Structural Bioinformatics and Network Biology Group|http://sbnb.irbbarcelona.org/|Maintains
			The Spanish Ministerio de Ciencia e Innovacion|https://www.ciencia.gob.es/|Funds
			European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Funds
			European Commission FP7|https://ec.europa.eu/growth/sectors/space/research/fp7_en|Funds
			The Spanish Ministerio de Ciencia e Innovacin||Funds
		After:
			The Spanish Ministerio de Ciencia e Innovacion|https://www.ciencia.gob.es/|Funds
			European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Funds
			European Commission FP7|https://ec.europa.eu/growth/sectors/space/research/fp7_en|Funds
			Structural Bioinformatics and Network Biology Group|http://sbnb.irbbarcelona.org/|Maintains
		Added:
		Removed:
			The Spanish Ministerio de Ciencia e Innovacin||Funds

	'onto_domains' has been modified:
		Before:
			Protein interactions
			Protein structure
			molecular interaction
			protein
			structure
		After:
			Protein interactions
			Protein structure
			Structure
			molecular interaction
			protein
			structure
		Added:
			Structure
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.jptb1m' by 'The FAIRsharing Team' at 19:51, 11 Jan 2018 (approved):

	'miriam_url' has been modified:
		Before: None
		After:

Edits to 'https://fairsharing.org/FAIRsharing.jptb1m' by 'The FAIRsharing Team' at 18:02, 02 Sep 2016 (approved):

	'year' has been modified:
		Before: None
		After: 2010 Support links have changed:  Previous values: 3did@irbbarcelona.org http://3did.irbbarcelona.org/help.php New values:  3did@irbbarcelona.org 3did@irbbarcelona.org Grants have changed:  Previous values: 223101(AntiPathoGN) 306240 (SyStemAge) BIO2007-62426 BIO2010-22073 PSS-010000-2009 New values:  BIO2010-22073 306240 (SyStemAge) BIO2007-62426 PSS-010000-2009 223101(AntiPathoGN)

Edits to 'https://fairsharing.org/FAIRsharing.jptb1m' by 'The FAIRsharing Team' at 18:01, 02 Sep 2016 (approved):

	'contactName' has been modified:
		Before:
			
		After:
			Patrick Aloy
		Added:
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.jptb1m' by 'The FAIRsharing Team' at 17:59, 02 Sep 2016 (approved):

	'description' has been modified:
		Before: The database of 3D Interaction Domains (3did) is a collection of domain-domain interactions in proteins for which high-resolution three-dimensional structures are known. 3did exploits structural information to provide critical molecular details necessary for understanding how interactions occur
		After: The database of 3D Interaction Domains (3did) is a collection of domain-domain interactions in proteins for which high-resolution three-dimensional structures are known. 3did exploits structural information to provide critical molecular details necessary for understanding how interactions occur. Domain list has changed:  Previous values: Interactions|| Life Science|domain| Protein|material|http://purl.org/obo/owl/GO#GO_0003675 Structure data|information content entity|http://purl.org/obo/owl/PATO#PATO_0000141 New values:  Interactions|| Life Science|domain| Protein|material|http://purl.org/obo/owl/GO#GO_0003675 Structure data|information content entity|http://purl.org/obo/owl/PATO#PATO_0000141 Protein 3D structure|| Publication List has changed:  Previous values: 3did: identification and classification of domain-based interactions of known three-dimensional structure. New values:  3did: identification and classification of domain-based interactions of known three-dimensional structure. 3did: a catalog of domain-based interactions of known three-dimensional structure. Support links have changed:  Previous values: New values:  http://3did.irbbarcelona.org/help.php Data processes have changed:  Previous values: Download New values:  download search browse Licenses have changed:  Previous values: Attribution required Flow Repository Open access attribution required free for non-commercial use New values:  Attribution required Flow Repository Open access free for non-commercial use Grants have changed:  Previous values: New values:  BIO2010-22073 306240 (SyStemAge) BIO2007-62426 PSS-010000-2009 223101(AntiPathoGN)

In Collections

RDA Covid-19 WG Resources

Support

General

support email

3did@irbbarcelona.org

Additional Information

Contact

Patrick Aloy ORCID

Tools

http://3did.irbbarcelona.org/iquery.html

Access / Retrieve Data

Conditions of Use

Applies to: Data use

3D interacting domains Attribution required

Data Access

download	http://3did.irbbarcelona.org/download.php
search	http://3did.irbbarcelona.org/search.php
browse	http://3did.irbbarcelona.org/browse.php

Publications

3did: identification and classification of domain-based interactions of known three-dimensional structure.

Stein A., Céol A., Aloy P.,
Nucleic Acids Res. 2011

View Paper (PubMed) View Publication

3did: a catalog of domain-based interactions of known three-dimensional structure.

Mosca R, Ceol A, Stein A, Olivella R, Aloy P
Nucleic Acids Res 2013

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Gene Ontology

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is in need of a maintainer. If you login, you'll be able to claim this record.

Funds

The Spanish Ministerio de Ciencia e Innovacion (Government body)
European Commission under FP7 Grant Agreement (Government body)
European Commission FP7 (Government body)

Maintains

Structural Bioinformatics and Network Biology Group (Lab)

Grant Number(s)

223101(AntiPathoGN) (European Commission FP7)
306240 (SyStemAge) (European Commission FP7)
BIO2007-62426 (The Spanish Ministerio de Ciencia e Innovacion)
BIO2010-22073 (The Spanish Ministerio de Ciencia e Innovacion)
PSS-010000-2009 (The Spanish Ministerio de Ciencia e Innovacion)

3D interacting domains

We need your help!

Developed by

Contact Us

About FAIRsharing