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AmoebaDB

General Information

AmoebaDB belongs to the EuPathDB family of databases and is an integrated genomic and functional genomic database for Entamoeba and Acanthamoeba parasites. In its first released, AmoebaDB contained the genomes of three Entamoeba species. AmoebaDB integrates whole genome sequence and annotation and will rapidly expand to include experimental data and environmental isolate sequences provided by community researchers . The database includes supplemental bioinformatics analyses and a web interface for data-mining.

Homepage http://amoebadb.org

Countries that developed this resource United States

Created in 2010

Taxonomic range

Acanthamoeba

Entamoeba

Naegleria fowleri

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: AmoebaDB; AmoebaDB; DOI: https://doi.org/10.25504/FAIRsharing.swbypy; Last edited: April 26, 2021, 3:39 p.m.; Last accessed: Oct 25 2021 11:34 a.m.

Record updated: April 20, 2021, 12:09 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.swbypy' by 'The FAIRsharing Team' at 12:09, 20 Apr 2021 (approved):

	'licences' has been modified:
		Before:
			Attribution required||Data
			Publicly available data||Data
		After:
			AmoebaDB Attribution required|https://amoebadb.org/amoeba/app/static-content/about.html#about_citing|Data
			AmoebaDB Data Access Policy|https://amoebadb.org/amoeba/app/static-content/about.html|Data
		Added:
			AmoebaDB Attribution required|https://amoebadb.org/amoeba/app/static-content/about.html#about_citing|Data
			AmoebaDB Data Access Policy|https://amoebadb.org/amoeba/app/static-content/about.html|Data
		Removed:
			Attribution required||Data
			Publicly available data||Data

Edits to 'https://fairsharing.org/FAIRsharing.swbypy' by 'The FAIRsharing Team' at 21:47, 12 Dec 2016 (approved):

	'shortname' has been modified:
		Before: AmoebaDB
		After:

Support

General

contact form	http://amoebadb.org/amoeba/contact.do
help	How to Use
training	http://amoebadb.org/amoeba/showXmlDataCo ...
twitter	@eupathdb

Additional Information

Contact

Omar Harb

Tools

BLAST

http://amoebadb.org/amoeba/showQuestion.do?questionFullName=UniversalQ ...

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Curation

http://amoebadb.org/EuPathDB_datasubm_SOP.pdf

No link recorded

Data Access

Download

http://amoebadb.org/common/downloads/

Publications

EuPathDB: a portal to eukaryotic pathogen databases.

Aurrecoechea C., Brestelli J., Brunk BP. et al.
Nucleic Acids Res. 2010

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is in need of a maintainer. If you login, you'll be able to claim this record.

Funds

National Institutes of Health (NIH), Bethesda, MD, USA (Government body)
National Institute of Allergy and Infectious Diseases (NIAD), Bethesda, MD, USA (Government body)

Maintains

EuPathDB Project Team

Grant Number(s)

HHSN272200900038C (National Institutes of Health (NIH), Bethesda, MD, USA)

AmoebaDB

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