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Database of Genomic Variants Archive

Abbreviation:DGVa

Recommended

General Information

This record was deprecated on Feb. 10, 2020 for the following reason(s): This resource has been deprecated, with read-only access being available for a period of time.

The Database of Genomic Variants archive (DGVa) is a repository that provides archiving, accessioning and distribution of publicly available genomic structural variants, in all species.

This record is replaced by:

European Variation Archive

Homepage http://www.ebi.ac.uk/dgva/

Countries that developed this resource Austria , Belgium , Croatia , Czech Republic , Denmark , Finland , France , Germany , Greece , Hungary , Iceland , Israel , Italy , Lithuania , Luxembourg , Malta , Montenegro , Netherlands , Norway , Portugal , Republic of Ireland , Slovakia , Spain , Sweden , Switzerland , United Kingdom

Taxonomic range

All

Knowledge Domains

Subjects

In the following recommendations:

How to cite this record FAIRsharing.org: DGVa; Database of Genomic Variants Archive; DOI: https://doi.org/10.25504/FAIRsharing.txkh36; Last edited: Feb. 10, 2020, 10 a.m.; Last accessed: Jun 06 2020 3:34 p.m.

This record is maintained by EuropeanVariation

Record updated: Feb. 10, 2020, 10 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.txkh36' by 'The FAIRsharing Team' at 10:00, 10 Feb 2020 (approved):

	'contactEmail' has been modified:
		Before: dgva-helpdesk@ebi.ac.uk
		After: eva-helpdesk@ebi.ac.uk

	'miriam_id' has been modified:
		Before: None
		After:

Edits to 'https://fairsharing.org/FAIRsharing.txkh36' by 'The FAIRsharing Team' at 09:55, 10 Feb 2020 (approved):

	'status' has been modified:
		Before: RDY
		After: DEP

	'miriam_id' has been modified:
		Before: 
		After: None

Edits to 'https://fairsharing.org/FAIRsharing.txkh36' by 'The FAIRsharing Team' at 13:34, 06 Feb 2020 (approved):

	'shortname' has been modified:
		Before: DGVA
		After: DGVa

	'description' has been modified:
		Before: The Database of Genomic Variants archive (DGVA) is a repository that provides archiving, accessioning and distribution of publicly available genomic structural variants, in all species.
		After: The Database of Genomic Variants archive (DGVa) is a repository that provides archiving, accessioning and distribution of publicly available genomic structural variants, in all species.

Edits to 'https://fairsharing.org/FAIRsharing.txkh36' by 'The FAIRsharing Team' at 13:34, 06 Feb 2020 (approved):

	'related_databases' has been modified:
		Before:
			ArrayExpress
			European Nucleotide Archive
			The European Genome-phenome Archive
			Ensembl
			Database of genomic structural VARiation
			Database of Genomic Variants
		After:
			ArrayExpress
			European Nucleotide Archive
			The European Genome-phenome Archive
			Ensembl
			Database of genomic structural VARiation
			European Variation Archive
			Database of Genomic Variants
		Added:
			European Variation Archive
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.txkh36' by 'The FAIRsharing Team' at 13:25, 06 Feb 2020 (approved):

	'onto_disciplines' has been modified:
		Before:
			Genomics
			Life Science
		After:
			Genomics
		Added:
		Removed:
			Life Science

	'supportLinks' has been modified:
		Before:
			tess training|https://tess.elixir-europe.org/materials/dgva-quick-tour
			training|http://www.ebi.ac.uk/training/online/course/dgva-quick-tour
		After:
			TeSS training|https://tess.elixir-europe.org/materials/dgva-quick-tour
			training|https://www.ebi.ac.uk/dgva/dgva-quick-tour-ebi-train-online
		Added:
			TeSS training|https://tess.elixir-europe.org/materials/dgva-quick-tour
			training|https://www.ebi.ac.uk/dgva/dgva-quick-tour-ebi-train-online
		Removed:
			tess training|https://tess.elixir-europe.org/materials/dgva-quick-tour
			training|http://www.ebi.ac.uk/training/online/course/dgva-quick-tour

	'contactORCID' has been modified:
		Before: 0000-0002-7468-0008
		After: 

	'dataProcesses' has been modified:
		Before:
			Download
			Submit
		After:
			Download
			Submit
			Browse
		Added:
			Browse
		Removed:

	'countries' has been modified:
		Before:
			European Union
			Switzerland
			United Kingdom
		After:
			Austria
			Belgium
			Croatia
			Czech Republic
			Denmark
			Finland
			France
			Germany
			Greece
			Hungary
			Iceland
			Israel
			Italy
			Lithuania
			Luxembourg
			Malta
			Montenegro
			Netherlands
			Norway
			Portugal
			Republic of Ireland
			Slovakia
			Spain
			Sweden
			Switzerland
			United Kingdom
		Added:
			Austria
			Belgium
			Croatia
			Czech Republic
			Denmark
			Finland
			France
			Germany
			Greece
			Hungary
			Iceland
			Israel
			Italy
			Lithuania
			Luxembourg
			Malta
			Montenegro
			Netherlands
			Norway
			Portugal
			Republic of Ireland
			Slovakia
			Spain
			Sweden
		Removed:
			European Union

Edits to 'https://fairsharing.org/FAIRsharing.txkh36' by 'The FAIRsharing Team' at 13:28, 14 Jan 2019 (approved):

	'supportLinks' has been modified:
		Before:
			training|http://www.ebi.ac.uk/training/online/course/dgva-quick-tour
			training|http://www.ebi.ac.uk/training/online/
		After:
			tess training|https://tess.elixir-europe.org/materials/dgva-quick-tour
			training|http://www.ebi.ac.uk/training/online/course/dgva-quick-tour
		Added:
			tess training|https://tess.elixir-europe.org/materials/dgva-quick-tour
		Removed:
			training|http://www.ebi.ac.uk/training/online/

	'miriam_id' has been modified:
		Before: None
		After: 

	'onto_domains' has been modified:
		Before:
			Genetic Polymorphism
			curated information
			structure
		After:
			Genetic Polymorphism
			curated information
			structure
			variant
		Added:
			variant
		Removed:

	'organizations' has been modified:
		Before:
			Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains
			European Molecular Biology Laboratory (EMBL), Heidelberg, Germany|http://www.embl.org|Funds
		After:
			European Molecular Biology Laboratory (EMBL), Heidelberg, Germany|http://www.embl.org|Funds
			European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
		Added:
			European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
		Removed:
			Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains

Edits to 'https://fairsharing.org/FAIRsharing.txkh36' by 'The FAIRsharing Team' at 11:42, 21 Nov 2018 (approved):

	'domains' has been modified:
		Before:
			Curated information
			Genomics
			Life Science
			Structure
		After:
			Curated information
			Genetic polymorphism
			Genomics
			Life Science
			Structure
		Added:
			Genetic polymorphism
		Removed:

	'miriam_id' has been modified:
		Before: 
		After: None

Edits to 'https://fairsharing.org/FAIRsharing.txkh36' by 'The FAIRsharing Team' at 16:39, 19 Oct 2018 (approved):

	'contact' has been modified:
		Before: Gary Saunders
		After: General Contact

	'countries' has been modified:
		Before:
			United Kingdom
		After:
			European Union
			Switzerland
			United Kingdom
		Added:
			European Union
			Switzerland
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.txkh36' by 'The FAIRsharing Team' at 08:04, 27 Jul 2018 (approved):

	'supportLinks' has been modified:
		Before:
			training|http://www.ebi.ac.uk/training/online/course/dgva-quick-tour
			training|http://www.ebi.ac.uk/training/online/
			twitter|@EBIvariation
		After:
			training|http://www.ebi.ac.uk/training/online/course/dgva-quick-tour
			training|http://www.ebi.ac.uk/training/online/
		Added:
		Removed:
			twitter|@EBIvariation

Edits to 'https://fairsharing.org/FAIRsharing.txkh36' by 'The FAIRsharing Team' at 08:02, 27 Jul 2018 (approved):

	'related_databases' has been modified:
		Before:
			Ensembl
			Database of genomic structural VARiation
		After:
			ArrayExpress
			European Nucleotide Archive
			The European Genome-phenome Archive
			Ensembl
			Database of genomic structural VARiation
		Added:
			ArrayExpress
			European Nucleotide Archive
			The European Genome-phenome Archive
		Removed:

	'miriam_id' has been modified:
		Before: None
		After:

In Collections

Data Citation Implementation

Support

General

training

DGVa: Quick tour (EBI)

Additional Information

Contact

General Contact

TeSS training resources

DGVa: Quick tour

Tools

No tools defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

EMBL-EBI Terms of Use

Data Release

Download

https://www.ebi.ac.uk/dgva/data-download

Data Curation

Submit

https://www.ebi.ac.uk/dgva/data-submission

Data Access

Browse

https://www.ebi.ac.uk/eva/?Study-Browser&browserType=sv

Publications

No publications available

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Implementing Policies

Credit

Record Maintainer

This record is maintained by EuropeanVariation

Funds

European Molecular Biology Laboratory (EMBL), Heidelberg, Germany (Research institute)

Maintains

European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK (Research institute) Lead

Database of Genomic Variants Archive

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