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Animal Trait Ontology for Livestock

Abbreviation: ATOL

General Information

ATOL (Animal Trait Ontology for Livestock) is an ontology of characteristics defining phenotypes of livestock in their environment. ATOL aims to: provide a reference ontology of phenotypic traits of farm animals for the international scientific and educational - communities, farmers, etc.; deliver this reference ontology in a language which can be used by computers in order to support database management, semantic analysis and modeling; represent traits as generic as possible for livestock vertebrates; make the ATOL ontology as operational as possible and closely related to measurement techniques; and structure the ontology in relation to animal production.

Homepage http://www.atol-ontology.com/en/atol-2/

Countries that developed this resource France

Created in 2009

Taxonomic range

Vertebrata

Knowledge Domains

Subjects

User-defined Tags

General purpose

Livestock

How to cite this record FAIRsharing.org: ATOL; Animal Trait Ontology for Livestock; DOI: https://doi.org/10.25504/FAIRsharing.wsfk5z; Last edited: April 15, 2021, 3:23 p.m.; Last accessed: Oct 17 2021 10:25 p.m.

This record is maintained by VO@INRAE (lovinra)

Record added: Oct. 24, 2017, 9:41 a.m.
Record updated: April 15, 2021, 1:54 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.wsfk5z' by 'The FAIRsharing Team' at 13:54, 15 Apr 2021 (approved):

	'organizations' has been modified:
		Before:
			INRA Phase - Animal Physiology and Livestock Systems|http://institut.inra.fr/en|Maintains
		After:
			National Research Institute for Agriculture, Food and Environment (INRAE), France|http://www.inrae.fr/|Maintains
		Added:
			National Research Institute for Agriculture, Food and Environment (INRAE), France|http://www.inrae.fr/|Maintains
		Removed:
			INRA Phase - Animal Physiology and Livestock Systems|http://institut.inra.fr/en|Maintains

Edits to 'https://fairsharing.org/FAIRsharing.wsfk5z' by 'The FAIRsharing Team' at 09:46, 15 Apr 2021 (approved):

	'dataProcesses' has been modified:
		Before:
			Download, data release, http://147.99.156.182/ontologies/visualisation/ontologie/atol/creation_fichier_owl.php?filename=atol.owl
			Browse, data access, http://147.99.156.182/ontologies/visualisation/ontologie/?ontologie=atol
			AgroPortal: Browse / Download, data access, http://agroportal.lirmm.fr/ontologies/ATOL
		After:
			Download, data release, https://sicpa-web.cati.inrae.fr/ontologies/visualisation/ontologie/?versions_ontologie=atol
			Browse, data access, https://sicpa-web.cati.inrae.fr/ontologies/visualisation/ontologie/?ontologie=atol
			AgroPortal: Browse / Download, data access, http://agroportal.lirmm.fr/ontologies/ATOL
		Added:
			Download, data release, https://sicpa-web.cati.inrae.fr/ontologies/visualisation/ontologie/?versions_ontologie=atol
			Browse, data access, https://sicpa-web.cati.inrae.fr/ontologies/visualisation/ontologie/?ontologie=atol
		Removed:
			Download, data release, http://147.99.156.182/ontologies/visualisation/ontologie/atol/creation_fichier_owl.php?filename=atol.owl
			Browse, data access, http://147.99.156.182/ontologies/visualisation/ontologie/?ontologie=atol

Edits to 'https://fairsharing.org/FAIRsharing.wsfk5z' by 'The FAIRsharing Team' at 16:26, 26 Feb 2020 (approved):

	'onto_disciplines' has been modified:
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			Agriculture
			Animal Husbandry
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			Agriculture
			Animal Husbandry
			Life Science
			Ontology and Terminology
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			Life Science
			Ontology and Terminology
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Edits to 'https://fairsharing.org/FAIRsharing.wsfk5z' by 'The FAIRsharing Team' at 09:32, 09 Jan 2020 (approved):

	'licences' has been modified:
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		After:
			Creative Commons Attribution 4.0 International (CC BY 4.0)|https://creativecommons.org/licenses/by/4.0/|Data
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			Creative Commons Attribution 4.0 International (CC BY 4.0)|https://creativecommons.org/licenses/by/4.0/|Data
		Removed:

	'supportLinks' has been modified:
		Before:
			contact form|http://www.atol-ontology.com/rb/en/7
			email|matthieu.reichstadt@clermont.inra.fr
			online documentation|https://www.ebi.ac.uk/ols/ontologies/atol
			online documentation|http://www.atol-ontology.com/ssrb/en/26
		After:
			email|matthieu.reichstadt@clermont.inra.fr
			online documentation|https://www.ebi.ac.uk/ols/ontologies/atol
		Added:
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			contact form|http://www.atol-ontology.com/rb/en/7
			online documentation|http://www.atol-ontology.com/ssrb/en/26

	'homepage' has been modified:
		Before: http://www.atol-ontology.com/
		After: http://www.atol-ontology.com/en/atol-2/

	'dataProcesses' has been modified:
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			Download
			Ontology Visualization
			Submit
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			Download
			Browse
			AgroPortal: Browse / Download
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			Browse
			AgroPortal: Browse / Download
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			Ontology Visualization
			Submit

Edits to 'https://fairsharing.org/FAIRsharing.wsfk5z' by 'The FAIRsharing Team' at 16:04, 31 Aug 2018 (approved):

	'domains' has been modified:
		Before:
			Agriculture
			Animal Husbandry, Breeding and Hygiene
			Livestock
			Phenotype
		After:
			Agriculture
			Animal Husbandry, Breeding and Hygiene
			Data standards
			General purpose
			Livestock
			Phenotype
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			Data standards
			General purpose
		Removed:

	'contact' has been modified:
		Before: LeBail Pierre-Yves
		After: Pierre-Yves LeBail 

	'dataProcesses' has been modified:
		Before:
			Download
			Ontology Visualization
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			Download
			Ontology Visualization
			Submit
		Added:
			Submit
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.wsfk5z' by 'The FAIRsharing Team' at 15:49, 31 Aug 2018 (approved):

	'miriam_id' has been modified:
		Before: None
		After:

Edits to 'https://fairsharing.org/FAIRsharing.wsfk5z' by 'The FAIRsharing Team' at 19:33, 16 Jan 2018 (approved):

	'homepage' has been modified:
		Before: www.atol-ontology.com
		After: http://www.atol-ontology.com/

Support

General

support email	Matthieu Reichstadt
online documentation	ATOL in the EBI's Ontology Lookup Servic ...

Additional Information

Contact

Pierre-Yves LeBail

External Links

Bioportal

http://bioportal.bioontology.org/ontologies/ATOL

Tools

No tools defined

Schemas

No XSD schemas defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Creative Commons Attribution 4.0 International (CC BY 4.0)

Data Release

Download

https://sicpa-web.cati.inrae.fr/ontologies/visualisation/ontologie/?ve ...

Data Access

Browse	https://sicpa-web.cati.inrae.fr/ontologies/visualisation/ontologie/?on ...
AgroPortal: Browse / Download	http://agroportal.lirmm.fr/ontologies/ATOL

Publications

No publications available

ATOL Ontology Display

View in BioPortal.

Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases (3)

Rat Genome Database
The Rat Genome Database stores genetic, genomic, phenotype, and disease data generated from rat research. It provides access to corresponding data for eight other species, allowing cross-species comparison. Data curation is performed both manually and via an automated pipeline, giving RGD users integrated access to a wide variety of data to support their research.

MGI Mouse Gene Expression Database
The Gene Expression Database (GXD) is a community resource for gene expression information from the laboratory mouse. GXD stores and integrates different types of expression data and makes these data freely available in formats appropriate for comprehensive analysis. There is particular emphasis on endogenous gene expression during mouse development.

GWAS Atlas
The GWAS Atlas is a manually curated resource of genome-wide variant-trait associations for a wide range of species.

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by VO@INRAE (lovinra)

Maintains

National Research Institute for Agriculture, Food and Environment (INRAE), France (Research institute)

Animal Trait Ontology for Livestock

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