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MitoMiner

General Information

MitoMiner is an integrated data warehouse of mammalian localisation evidence, phenotypes and diseases. This data has been integrated to allow the creation of sophisticated data mining queries spanning many different sources. It is primarily concerned with data for mammals, zebrafish and yeasts.

Homepage http://mitominer.mrc-mbu.cam.ac.uk

Countries that developed this resource United Kingdom

Created in 2009

Taxonomic range

Eukaryota

Knowledge Domains

Subjects

User-defined Tags

Mitochondrial proteomics data

How to cite this record FAIRsharing.org: MitoMiner; MitoMiner; DOI: https://doi.org/10.25504/FAIRsharing.wx1yak; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Oct 25 2021 12:50 p.m.

This record is maintained by InterMineTeam

Record updated: Dec. 12, 2018, 9:30 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.wx1yak' by 'The FAIRsharing Team' at 21:30, 12 Dec 2018 (approved):

	'related_databases' has been modified:
		Before:
		After:
			Saccharomyces Genome Database
			Integrated resource of protein families, domains and functional sites
			Ensembl
			Human Protein Atlas
			Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
			UniProt Knowledgebase
			The Zebrafish Information Network
			Kyoto Encyclopedia of Genes and Genomes
			Online Mendelian Inheritance in Man
		Added:
			Saccharomyces Genome Database
			Integrated resource of protein families, domains and functional sites
			Ensembl
			Human Protein Atlas
			Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
			UniProt Knowledgebase
			The Zebrafish Information Network
			Kyoto Encyclopedia of Genes and Genomes
			Online Mendelian Inheritance in Man
		Removed:

	'supportLinks' has been modified:
		Before:
			FAQ|http://mitominer.mrc-mbu.cam.ac.uk/support/faq
			email|mitominer@mrc-mbu.cam.ac.uk
			help|http://mitominer.mrc-mbu.cam.ac.uk/support/tutorials
			online documentation|http://mitominer.mrc-mbu.cam.ac.uk/support/
			online documentation|http://mitominer.mrc-mbu.cam.ac.uk/release-4.0/dataCategories.do
		After:
			FAQ|http://mitominer.mrc-mbu.cam.ac.uk/support/faq
			email|mitominer@mrc-mbu.cam.ac.uk
			help|http://mitominer.mrc-mbu.cam.ac.uk/support/tutorials
			online documentation|http://mitominer.mrc-mbu.cam.ac.uk/support/
			online documentation|http://mitominer.mrc-mbu.cam.ac.uk/release-4.0/dataCategories.do
			tess training|https://tess.elixir-europe.org/materials/intermine-user-tutorial
			tess training|https://tess.elixir-europe.org/materials/intermine-user-manual
		Added:
			tess training|https://tess.elixir-europe.org/materials/intermine-user-tutorial
			tess training|https://tess.elixir-europe.org/materials/intermine-user-manual
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.wx1yak' by 'The FAIRsharing Team' at 14:43, 15 Nov 2018 (approved):

	'licences' has been modified:
		Before:
			GNU Lesser General Public License (LGPL) 2.1|https://www.gnu.org/licenses/lgpl-2.1.html|Data
		After:
			GNU Lesser General Public License (LGPL) 2.1|https://www.gnu.org/licenses/lgpl-2.1.html|Software
		Added:
			GNU Lesser General Public License (LGPL) 2.1|https://www.gnu.org/licenses/lgpl-2.1.html|Software
		Removed:
			GNU Lesser General Public License (LGPL) 2.1|https://www.gnu.org/licenses/lgpl-2.1.html|Data

Edits to 'https://fairsharing.org/FAIRsharing.wx1yak' by 'The FAIRsharing Team' at 11:49, 07 Nov 2018 (approved):

	'supportLinks' has been modified:
		Before:
			FAQ|http://mitominer.mrc-mbu.cam.ac.uk/support/faq
			contact form|http://mitominer.mrc-mbu.cam.ac.uk/release-4.0/api.do
			help|http://mitominer.mrc-mbu.cam.ac.uk/support/tutorials
		After:
			FAQ|http://mitominer.mrc-mbu.cam.ac.uk/support/faq
			email|mitominer@mrc-mbu.cam.ac.uk
			help|http://mitominer.mrc-mbu.cam.ac.uk/support/tutorials
			online documentation|http://mitominer.mrc-mbu.cam.ac.uk/support/
			online documentation|http://mitominer.mrc-mbu.cam.ac.uk/release-4.0/dataCategories.do
		Added:
			email|mitominer@mrc-mbu.cam.ac.uk
			online documentation|http://mitominer.mrc-mbu.cam.ac.uk/support/
			online documentation|http://mitominer.mrc-mbu.cam.ac.uk/release-4.0/dataCategories.do
		Removed:
			contact form|http://mitominer.mrc-mbu.cam.ac.uk/release-4.0/api.do

	'description' has been modified:
		Before: Integrated web resource of mitochondrial localisation evidence and phenotype data for mammals, zebrafish and yeasts.
		After: MitoMiner is an integrated data warehouse of mammalian localisation evidence, phenotypes and diseases. This data has been integrated to allow the creation of sophisticated data mining queries spanning many different sources. It is primarily concerned with data for mammals, zebrafish and yeasts.

	'licences' has been modified:
		Before:
		After:
			GNU Lesser General Public License (LGPL) 2.1|https://www.gnu.org/licenses/lgpl-2.1.html|Data
		Added:
			GNU Lesser General Public License (LGPL) 2.1|https://www.gnu.org/licenses/lgpl-2.1.html|Data
		Removed:

	'dataProcesses' has been modified:
		Before:
			ad-hoc release
			biannual release  (as in twice a year)
			manual curation
			versioning by date
			file download(txt,XML,XLS)
			SQL database dump
			search
		After:
			Search via pre-defined queries
			Search against a list
			Advanced Search (query builder)
		Added:
			Search via pre-defined queries
			Search against a list
			Advanced Search (query builder)
		Removed:
			ad-hoc release
			biannual release  (as in twice a year)
			manual curation
			versioning by date
			file download(txt,XML,XLS)
			SQL database dump
			search

	'miriam_id' has been modified:
		Before: None
		After: 

	'accessPoints' has been modified:
		Before:
			Other|http://mitominer.mrc-mbu.cam.ac.uk/release-4.0/api.do|Perl Web Service Client
		After:
			REST|http://mitominer.mrc-mbu.cam.ac.uk/release-4.0/api.do|Web Service Client (Perl, Python, Ruby, Java)
		Added:
			REST|http://mitominer.mrc-mbu.cam.ac.uk/release-4.0/api.do|Web Service Client (Perl, Python, Ruby, Java)
		Removed:
			Other|http://mitominer.mrc-mbu.cam.ac.uk/release-4.0/api.do|Perl Web Service Client

	'tools' has been modified:
		Before:
			InterMine||http://www.intermine.org
			Query Builder||http://mitominer.mrc-mbu.cam.ac.uk/release-4.0/customQuery.do
		After:
		Added:
		Removed:
			InterMine||http://www.intermine.org
			Query Builder||http://mitominer.mrc-mbu.cam.ac.uk/release-4.0/customQuery.do

Edits to 'https://fairsharing.org/FAIRsharing.wx1yak' by 'The FAIRsharing Team' at 01:52, 19 Sep 2016 (approved):

	'name' has been modified:
		Before: MitoMiner: A data warehouse for mitochondrial proteomics data
		After: MitoMiner

Edits to 'https://fairsharing.org/FAIRsharing.wx1yak' by 'The FAIRsharing Team' at 17:13, 12 Sep 2016 (approved):

	'description' has been modified:
		Before: Mitochondrial proteomics data
		After: Integrated web resource of mitochondrial localisation evidence and phenotype data for mammals, zebrafish and yeasts.

In Collections

InterMine

Support

General

FAQ	MitoMiner FAQ
support email	MitoMiner General Contact
help	MitoMiner Tutorial
online documentation	MitoMiner News
online documentation	Data Sources for MitoMiner

Additional Information

Contact

Alan J. Robinson

TeSS training resources

InterMine user tutorial

InterMine user manual

Tools

No tools defined

Access / Retrieve Data

Conditions of Use

Applies to: Database software

GNU Lesser General Public License (LGPL) 2.1

Data Access

Search via pre-defined queries	http://mitominer.mrc-mbu.cam.ac.uk/release-4.0/templates.do
Search against a list	http://mitominer.mrc-mbu.cam.ac.uk/release-4.0/bag.do
Advanced Search (query builder)	http://mitominer.mrc-mbu.cam.ac.uk/release-4.0/customQuery.do

REST Web Services

Web Service Client (Perl, Python, Ruby, Java)

http://mitominer.mrc-mbu.cam.ac.uk/release-4.0/api.do

Publications

MitoMiner, an integrated database for the storage and analysis of mitochondrial proteomics data.

Smith AC., Robinson AJ.,
Mol. Cell Proteomics 2009

View Paper (PubMed) View Publication

MitoMiner v3.1, an update on the mitochondrial proteomics database.

Smith AC,Robinson AJ
Nucleic Acids Res 2015

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Gene Ontology

Models and Formats

FASTA Sequence Format

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by InterMineTeam

Funds

Medical Research Council (MRC), London, UK (Government body)

Maintains

MRC Mitochondrial Biology Unit (MBU), Cambridge, UK (Government body) Lead

MitoMiner

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