standards > reporting guideline > DOI:10.25504/FAIRsharing.x6dcc7
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ready Minimum Information about an ENVironmental transcriptomic experiment

Abbreviation: MIAME/Env


General Information
MIAME defines a conceptual structure for defining the core information that is common to most microarray experiments. MIAME/Env is an extension of these guidelines to cover environmental genomics.



How to cite this record FAIRsharing.org: MIAME/Env; Minimum Information about an ENVironmental transcriptomic experiment; DOI: https://doi.org/10.25504/FAIRsharing.x6dcc7; Last edited: Jan. 8, 2019, 1:33 p.m.; Last accessed: Sep 16 2021 11:10 a.m.


Record updated: Sept. 5, 2016, 9:49 a.m. by The FAIRsharing Team.

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General

Additional Information


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Publications

Annotation of environmental OMICS data: application to the transcriptomics domain.

Morrison N,Wood AJ,Hancock D,Shah S,Hakes L,Gray T,Tiwari B,Kille P,Cossins A,Hegarty M,Allen MJ,Wilson WH,Olive P,Last K,Kramer C,Bailhache T,Reeves J,Pallett D,Warne J,Nashar K,Parkinson H,Sansone SA,Rocca-Serra P,Stevens R,Snape J,Brass A,Field D
OMICS 2006

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Related Standards

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Related Databases (5)
Tomato Functional Genomics Database
The Tomato Functional Genomics Database integrates several prior databases including the Tomato Expression Database and Tomato Metabolite Database, and the Tomato Small RNA Database.

ArrayExpress
ArrayExpress is a database of functional genomics experiments that can be queried and the data downloaded. It includes gene expression data from microarray and high throughput sequencing studies. Data is collected to MIAME and MINSEQE standards. Experiments are submitted directly to ArrayExpress or are imported from the NCBI GEO database.

Gene Expression Omnibus
The Gene Expression Omnibus (GEO) is a public repository that archives and freely distributes microarray, next-generation sequencing, and other forms of high-throughput functional genomic data submitted by the scientific community. In addition to data storage, a collection of web-based interfaces and applications are available to help users query and download the studies and gene expression patterns stored in GEO.

Stanford Microarray Database
The Stanford Microarray Database is a repository a microarray based gene expression and comparative genomics data. This resource is no longer being maintained please us public repositories NCBI Gene Expression Omnibus or EBI Array Express

Chemical Effects in Biological Systems
The Chemical Effects in Biological Systems (CEBS) database houses data of interest to environmental health scientists. CEBS is a public resource, and has received depositions of data from academic, industrial, and governmental laboratories.

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