databases > DOI:10.25504/FAIRsharing.xtq1xf

ready TIGRFAMs

General Information
TIGRFAMs is a collection of manually curated protein families focusing primarily on prokaryotic sequences.It consists of hidden Markov models (HMMs), multiple sequence alignments, Gene Ontology (GO) terminology, Enzyme Commission (EC) numbers, gene symbols, protein family names, descriptive text, cross-references to related models in TIGRFAMs and other databases, and pointers to literature. Originally developed at The Institute for Genomic Research (TIGR) and later at its successor, the J. Craig Venter Institute (JCVI), it is now maintained by the NCBI.




How to cite this record FAIRsharing.org: TIGRFAMs; TIGRFAMs; DOI: https://doi.org/10.25504/FAIRsharing.xtq1xf; Last edited: March 22, 2021, 10:43 a.m.; Last accessed: Apr 11 2021 2:22 p.m.

Publication for citation  RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation. Li W,O'Neill KR,Haft DH,DiCuccio M,Chetvernin V,Badretdin A,Coulouris G,Chitsaz F,Derbyshire MK,Durkin AS,Gonzales NR,Gwadz M,Lanczycki CJ,Song JS,Thanki N,Wang J,Yamashita RA,Yang M,Zheng C,Marchler-Bauer A,Thibaud-Nissen F; Nucleic Acids Res ; 2020; 33270901;


Record updated: March 22, 2021, 10:43 a.m. by The FAIRsharing Team.

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TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes.

Selengut JD., Haft DH., Davidsen T., Ganapathy A., Gwinn-Giglio M., Nelson WC., Richter AR., White O.,
Nucleic Acids Res. 2007

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TIGRFAMs and Genome Properties in 2013.

Haft DH,Selengut JD,Richter RA,Harkins D,Basu MK,Beck E
Nucleic Acids Res 2012

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RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation.

Li W,O'Neill KR,Haft DH,DiCuccio M,Chetvernin V,Badretdin A,Coulouris G,Chitsaz F,Derbyshire MK,Durkin AS,Gonzales NR,Gwadz M,Lanczycki CJ,Song JS,Thanki N,Wang J,Yamashita RA,Yang M,Zheng C,Marchler-Bauer A,Thibaud-Nissen F
Nucleic Acids Res 2020

View Paper (PubMed) View Publication

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  • DBI-0445826 (National Science Foundation (NSF), USA)

  • DE-FG02-04ER63935 (U.S. Department of Energy)

  • HHSN266200400038C (National Institute of Allergy and Infectious Diseases (NIAD), Bethesda, MD, USA)

  • HHSN272200900007C (National Institute of Allergy and Infectious Diseases (NIAD), Bethesda, MD, USA)

  • N01-AI30071 (National Institute of Allergy and Infectious Diseases (NIAD), Bethesda, MD, USA)

  • R01 HG004881 (National Human Genome Research Institute (NHGRI), Bethesda, MD, USA)