databases > DOI:10.25504/FAIRsharing.y3scf6

ready Pfam

Recommended
General Information
The Pfam database is a large collection of protein families, each represented by multiple sequence alignments and hidden Markov models (HMMs). Pfam also generates higher-level groupings of related entries, known as clans. A clan is a collection of Pfam entries which are related by similarity of sequence, structure or profile-HMM.


In the following recommendations:




How to cite this record FAIRsharing.org: Pfam; Pfam; DOI: https://doi.org/10.25504/FAIRsharing.y3scf6; Last edited: March 15, 2019, 12:20 p.m.; Last accessed: Dec 09 2019 9:13 p.m.

Publication for citation  The Pfam protein families database: towards a more sustainable future. Finn RD,Coggill P,Eberhardt RY,Eddy SR,Mistry J,Mitchell AL,Potter SC,Punta M,Qureshi M,Sangrador-Vegas A,Salazar GA,Tate J,Bateman A; Nucleic Acids Res ; 2015; 10.1093/nar/gkv1344;


Record updated: March 14, 2019, 8:20 p.m. by The FAIRsharing Team.

Show edit history



Tools

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Access


REST Web Services



Publications

The Pfam protein families database.

Finn RD., Mistry J., Tate J., Coggill P., Heger A., Pollington JE., Gavin OL., Gunasekaran P., Ceric G., Forslund K., Holm L., Sonnhammer EL., Eddy SR., Bateman A.,
Nucleic Acids Res. 2010

View Paper (PubMed) View Publication

The Pfam protein families database: towards a more sustainable future.

Finn RD,Coggill P,Eberhardt RY,Eddy SR,Mistry J,Mitchell AL,Potter SC,Punta M,Qureshi M,Sangrador-Vegas A,Salazar GA,Tate J,Bateman A
Nucleic Acids Res 2015

View Paper (PubMed) View Publication

Pfam: the protein families database.

Finn RD,Bateman A,Clements J,Coggill P,Eberhardt RY,Eddy SR,Heger A,Hetherington K,Holm L,Mistry J,Sonnhammer EL,Tate J,Punta M
Nucleic Acids Res 2013

View Paper (PubMed) View Publication

The Pfam protein families database.

Punta M,Coggill PC,Eberhardt RY,Mistry J,Tate J,Boursnell C,Pang N,Forslund K,Ceric G,Clements J,Heger A,Holm L,Sonnhammer EL,Eddy SR,Bateman A,Finn RD
Nucleic Acids Res 2011

View Paper (PubMed) View Publication

The Pfam protein families database.

Finn RD,Tate J,Mistry J,Coggill PC,Sammut SJ,Hotz HR,Ceric G,Forslund K,Eddy SR,Sonnhammer EL,Bateman A
Nucleic Acids Res 2007

View Paper (PubMed) View Publication

Pfam: clans, web tools and services.

Finn RD,Mistry J,Schuster-Bockler B,Griffiths-Jones S,Hollich V,Lassmann T,Moxon S,Marshall M,Khanna A,Durbin R,Eddy SR,Sonnhammer EL,Bateman A
Nucleic Acids Res 2005

View Paper (PubMed) View Publication

Pfam: a comprehensive database of protein domain families based on seed alignments.

Sonnhammer EL,Eddy SR,Durbin R
Proteins 1997

View Paper (PubMed)

The Pfam protein families database in 2019.

El-Gebali S,Mistry J,Bateman A,Eddy SR,Luciani A,Potter SC,Qureshi M,Richardson LJ,Salazar GA,Smart A,Sonnhammer ELL,Hirsh L,Paladin L,Piovesan D,Tosatto SCE,Finn RD
Nucleic Acids Res 2018

View Paper (PubMed) View Publication

Pfam: a comprehensive database of protein domain families based on seed alignments.

Sonnhammer EL,Eddy SR,Durbin R
Proteins 1997

View Paper (PubMed)

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined




Credit

Record Maintainer

  • This record is in need of a maintainer. If you login, you'll be able to claim this record.

Funds

Maintains

Grant Number(s)

  • 108433/Z/15/Z (The Wellcome Trust, UK)

  • 654039 (EU Horizon 2020)

  • BB/L024136/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)

  • BM1405 NGP-net (EuroKUP COST Action)

  • R01-HG009116 (National Human Genome Research Institute (NHGRI), Bethesda, MD, USA)

  • WT077044/Z/05/Z (The Wellcome Trust, UK)