standards > model/format > DOI:10.25504/FAIRsharing.zwjNAh


ready Adaptive Immune Receptor Repertoire Rearrangement Schema

Abbreviation: AIRR Rearrangement Schema


General Information
The Adaptive Immune Receptor Repertoire (AIRR) Rearrangement Schema, part of the AIRR Data Model, defines the annotations needed for rearrangements, which are sequences describing a rearranged adaptive immune receptor chain (e.g., antibody heavy chain or TCR beta chain). Data for Rearrangement objects are stored as rows in a tab-delimited file and should be compatible with any TSV reader. A dataset is defined in this context as: a TSV file, a TSV with a companion YAML file containing metadata, or a directory containing multiple TSV files and YAML files.

Homepage https://docs.airr-community.org/en/stable/datarep/rearrangements.html

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Created in 2018

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How to cite this record FAIRsharing.org: AIRR Rearrangement Schema; Adaptive Immune Receptor Repertoire Rearrangement Schema; DOI: https://doi.org/10.25504/FAIRsharing.zwjNAh; Last edited: Oct. 6, 2020, 11 a.m.; Last accessed: Oct 24 2020 9:57 a.m.

Publication for citation  AIRR Community Standardized Representations for Annotated Immune Repertoires Vander Heiden JA, Marquez S, Marthandan N, Bukhari SAC, Busse CE, Corrie B, Hershberg U, Kleinstein SH, Matsen Iv FA, Ralph DK, Rosenfeld AM, Schramm CA; AIRR Community, Christley S, Laserson U; Frontiers in Immunology ; 2018; 10.3389/fimmu.2018.02206;


This record is maintained by bcorrie  ORCID

Record added: April 29, 2020, 10:22 p.m.
Record updated: Oct. 6, 2020, 10:23 a.m. by The FAIRsharing Team.

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AIRR Community Standardized Representations for Annotated Immune Repertoires

Vander Heiden JA, Marquez S, Marthandan N, Bukhari SAC, Busse CE, Corrie B, Hershberg U, Kleinstein SH, Matsen Iv FA, Ralph DK, Rosenfeld AM, Schramm CA; AIRR Community, Christley S, Laserson U
Frontiers in Immunology 2018

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Related Databases (2)
iReceptor Public Archive
A data repository for the storage and sharing of Adaptive Immune Receptor Repertoire data. Primary public repository for the iReceptor Platform and Scientific Gateway.

VDJServer
VDJServer is a free, scalable resource for performing immune repertoire analysis and sharing data.

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