WormBase
Homepage http://www.wormbase.org/
Countries that developed this resource Canada , United Kingdom , United States
Created in 2000
Taxonomic range
Knowledge Domains
Subjects
User-defined Tags
In the following recommendations:
How to cite this record FAIRsharing.org: WormBase; WormBase; DOI: https://doi.org/10.25504/FAIRsharing.zx1td8; Last edited: Feb. 23, 2021, 3:54 p.m.; Last accessed: Jun 21 2021 11:48 p.m.
Publication for citation WormBase: a modern Model Organism Information Resource. Harris TW,Arnaboldi V,Cain S,Chan J,Chen WJ,Cho J,Davis P,Gao S,Grove CA,Kishore R,Lee RYN,Muller HM,Nakamura C,Nuin P,Paulini M,Raciti D,Rodgers FH,Russell M,Schindelman G,Auken KV,Wang Q,Williams G,Wright AJ,Yook K,Howe KL,Schedl T,Stein L,Sternberg PW; Nucleic Acids Res ; 2019; 10.1093/nar/gkz920;
Record updated: Feb. 23, 2021, 2:17 p.m. by The FAIRsharing Team.
| contact form | http://www.wormbase.org/tools/support?ur ... |
| support email | help@wormbase.org |
| help | http://blog.wormbase.org |
| online documentation | http://www.wormbase.org/about/userguide# ... |
| @wormbase |
| GBrowse | http://www.wormbase.org/tools/genome/gbrowse/ | |
| BLAST | http://www.wormbase.org/tools/blast_blat | |
| WormMine | http://www.wormbase.org/tools/wormmine/begin.do | v1.2.1 Beta version |
| TextPresso | http://www.textpresso.org/celegans/ |
Conditions of Use
Data Release
| Release | http://www.wormbase.org/about/release_schedule |
Data Access
| Website | http://www.wormbase.org |
| file download(tab-delimited) | ftp://ftp.wormbase.org/pub/wormbase/ |
Toward an interactive article: integrating journals and biological databases.
Rangarajan A., Schedl T., Yook K., Chan J., Haenel S., Otis L., Faelten S., DePellegrin-Connelly T., Isaacson R., Skrzypek MS., Marygold SJ., Stefancsik R., Cherry JM., Sternberg PW., Müller HM.,
BMC Bioinformatics 2011
The BioGRID Interaction Database: 2011 update.
Stark C., Breitkreutz BJ., Chatr-Aryamontri A., Boucher L., Oughtred R., Livstone MS., Nixon J., Van Auken K., Wang X., Shi X., Reguly T., Rust JM., Winter A., Dolinski K., Tyers M.,
Nucleic Acids Res. 2011
Localizing triplet periodicity in DNA and cDNA sequences.
Wang L., Stein LD.,
BMC Bioinformatics 2010
Representing ontogeny through ontology: a developmental biologist's guide to the gene ontology.
Hill DP., Berardini TZ., Howe DG., Van Auken KM.,
Mol. Reprod. Dev. 2010
The Gene Ontology in 2010: extensions and refinements.
The Gene Ontology Consortium
Nucleic Acids Res. 2010
WormBase: a comprehensive resource for nematode research.
Harris TW., Antoshechkin I., et al.,
Nucleic Acids Res. 2010
Semi-automated curation of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation.
Van Auken K., Jaffery J., Chan J., Müller HM., Sternberg PW.,
BMC Bioinformatics 2009
The Gene Ontology's Reference Genome Project: a unified framework for functional annotation across species.
The Gene Ontology Consortium
PLoS Comput. Biol. 2009
nGASP--the nematode genome annotation assessment project.
Coghlan A., Fiedler TJ., McKay SJ., Flicek P., Harris TW., Blasiar D., Stein LD.,
BMC Bioinformatics 2008
WormBase: a modern Model Organism Information Resource.
Harris TW,Arnaboldi V,Cain S,Chan J,Chen WJ,Cho J,Davis P,Gao S,Grove CA,Kishore R,Lee RYN,Muller HM,Nakamura C,Nuin P,Paulini M,Raciti D,Rodgers FH,Russell M,Schindelman G,Auken KV,Wang Q,Williams G,Wright AJ,Yook K,Howe KL,Schedl T,Stein L,Sternberg PW
Nucleic Acids Res 2019
WormBase 2017: molting into a new stage.
Lee RYN,Howe KL, et al.,
Nucleic Acids Res 2017
Reporting Guidelines
Terminology Artifacts
Models and Formats
Identifier Schemas
Metrics
No metrics standards defined
- Rockefeller University Press - Journal Of Experimental Medicine - Data Deposition
- Rockefeller University Press - Journal Of Cell Biology - Data Deposition
- PLOS Recommended Data Repositories
- Elsevier's Data Policy
- Scientific Data Data Policy
- Open Research Data and Data Management Plans - Information for ERC grantees by the ERC Scientific Council
- Elsevier - Current Opinion in Cell Biology - Guide for Authors
- Advanced Genetics
- eLife Recommended Repositories and Standards
Record Maintainer
This record is maintained by ranjana
Funds
Biotechnology and Biological Sciences Research Council (BBSRC), UK (Government body)
National Human Genome Research Institute (NHGRI), Bethesda, MD, USA (Government body)
Medical Research Council (MRC), London, UK (Government body)
Maintains
MRC Laboratory of Molecular Biology (LMB), Cambridge, UK (Government body)
The Wellcome Trust Sanger Institute, The Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK (Research institute)
Washington University in St Louis School of Medicine, USA (University)
California Institute of Technology (University)
Ontario Institute For Cancer Research (OICR), Toronto, ON, Canada (Research institute)
Grant Number(s)
U41 HG002223 (National Human Genome Research Institute (NHGRI), Bethesda, MD, USA)
