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GenBank

Recommended

General Information

GenBank is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences. The complete release notes for the current version of GenBank are available on the NCBI ftp site. A new release is made every two months. GenBank growth statistics for both the traditional GenBank divisions and the WGS division are available from each release. GenBank is part of the International Nucleotide Sequence Database Collaboration (INSDC), which comprises the DNA DataBank of Japan (DDBJ), the European Molecular Biology Laboratory (EMBL), and GenBank at the NCBI. These three organizations exchange data on a daily basis.

Homepage https://www.ncbi.nlm.nih.gov/genbank/

Countries that developed this resource European Union , Japan , United States

Created in 1982

Taxonomic range

All

Knowledge Domains

Subjects

In the following recommendations:

How to cite this record FAIRsharing.org: GenBank; GenBank; DOI: https://doi.org/10.25504/FAIRsharing.9kahy4; Last edited: Feb. 5, 2020, 11:46 a.m.; Last accessed: Apr 07 2020 8:42 p.m.

Publication for citation GenBank. Benson DA,Cavanaugh M,Clark K,Karsch-Mizrachi I,Lipman DJ,Ostell J,Sayers EW; Nucleic Acids Res ; 2012; 10.1093/nar/gks1195;

Record updated: Feb. 5, 2020, 11:44 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.9kahy4' by 'The FAIRsharing Team' at 11:44, 05 Feb 2020 (approved):

	'supportLinks' has been modified:
		Before:
			rss|http://www.ncbi.nlm.nih.gov/feed/rss.cgi?ChanKey=genbanksubmission
			wikipedia|https://en.wikipedia.org/wiki/GenBank
		After:
			help|https://www.ncbi.nlm.nih.gov/books/NBK25501/
			help|https://www.ncbi.nlm.nih.gov/genbank/submit_types/
			help|https://www.ncbi.nlm.nih.gov/genbank/submit/
			online documentation|https://www.ncbi.nlm.nih.gov/genbank/update/
			online documentation|https://www.ncbi.nlm.nih.gov/books/NBK53707/
			online documentation|https://www.ncbi.nlm.nih.gov/blast/producttable.shtml
			wikipedia|https://en.wikipedia.org/wiki/GenBank
		Added:
			help|https://www.ncbi.nlm.nih.gov/books/NBK25501/
			help|https://www.ncbi.nlm.nih.gov/genbank/submit_types/
			help|https://www.ncbi.nlm.nih.gov/genbank/submit/
			online documentation|https://www.ncbi.nlm.nih.gov/genbank/update/
			online documentation|https://www.ncbi.nlm.nih.gov/books/NBK53707/
			online documentation|https://www.ncbi.nlm.nih.gov/blast/producttable.shtml
		Removed:
			rss|http://www.ncbi.nlm.nih.gov/feed/rss.cgi?ChanKey=genbanksubmission

	'description' has been modified:
		Before: GenBank is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences.  GenBank is part of the International Nucleotide Sequence Database Collaboration, which comprises the DNA DataBank of Japan (DDBJ), the European Molecular Biology Laboratory (EMBL), and GenBank at NCBI. These three organizations exchange data on a daily basis. The complete release notes for the current version of GenBank are available on the NCBI ftp site. A new release is made every two months.  GenBank growth statistics for both the traditional GenBank divisions and the WGS division are available from each release.
		After: GenBank is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences. The complete release notes for the current version of GenBank are available on the NCBI ftp site. A new release is made every two months. GenBank growth statistics for both the traditional GenBank divisions and the WGS division are available from each release. GenBank is part of the International Nucleotide Sequence Database Collaboration (INSDC), which comprises the DNA DataBank of Japan (DDBJ), the European Molecular Biology Laboratory (EMBL), and GenBank at the NCBI. These three organizations exchange data on a daily basis. 

	'licences' has been modified:
		Before:
			MIRTAR is free for academic and non-profit use|http://mirtarbase.mbc.nctu.edu.tw/cache/download/LICENSE|Data
		After:
			NCBI Website and Data Usage Policies and Disclaimers|https://www.ncbi.nlm.nih.gov/home/about/policies/|Data
		Added:
			NCBI Website and Data Usage Policies and Disclaimers|https://www.ncbi.nlm.nih.gov/home/about/policies/|Data
		Removed:
			MIRTAR is free for academic and non-profit use|http://mirtarbase.mbc.nctu.edu.tw/cache/download/LICENSE|Data

	'tools' has been modified:
		Before:
			Submit||http://www.ncbi.nlm.nih.gov/BankIt
			Submit||http://www.ncbi.nlm.nih.gov/Sequin/index.html
			Submit||http://www.ncbi.nlm.nih.gov/BankIt/websub/?tool=barcode
			BLAST||http://www.ncbi.nlm.nih.gov/BLAST/
		After:
			tbl2asn2 Submission Tool||https://www.ncbi.nlm.nih.gov/genbank/tbl2asn2/
			BLAST||https://www.ncbi.nlm.nih.gov/blast
		Added:
			tbl2asn2 Submission Tool||https://www.ncbi.nlm.nih.gov/genbank/tbl2asn2/
			BLAST||https://www.ncbi.nlm.nih.gov/blast
		Removed:
			Submit||http://www.ncbi.nlm.nih.gov/BankIt
			Submit||http://www.ncbi.nlm.nih.gov/Sequin/index.html
			Submit||http://www.ncbi.nlm.nih.gov/BankIt/websub/?tool=barcode
			BLAST||http://www.ncbi.nlm.nih.gov/BLAST/

	'onto_disciplines' has been modified:
		Before:
			Life Science
		After:
			Bioinformatics
			Data Management
			Data Submission, Annotation and Curation
			Functional Genomics
			Genomics
			Metagenomics
			Transcriptomics
		Added:
			Bioinformatics
			Data Management
			Data Submission, Annotation and Curation
			Functional Genomics
			Genomics
			Metagenomics
			Transcriptomics
		Removed:
			Life Science

	'onto_domains' has been modified:
		Before:
			DNA sequence
			Nucleic acid sequence
			disease
			gene
			genome
		After:
			Annotation
			DNA sequence
			Genome assembly
			Nucleic acid sequence
			data storage
			deoxyribonucleic acid
			disease
			gene
			genome
			mRNA
			nucleotide
			sequence_alteration
			sequencing assay
			whole genome sequencing assay
		Added:
			Annotation
			Genome assembly
			data storage
			deoxyribonucleic acid
			mRNA
			nucleotide
			sequence_alteration
			sequencing assay
			whole genome sequencing assay
		Removed:

	'dataProcesses' has been modified:
		Before:
			bimonthly release (as in every 2 months)
			manual curation
			automated curation
			automated annotation
			current and historical archived versions are available for download
			FTP
			ftp://bio-mirror.net/biomirror/genbank/
		After:
			bimonthly release (as in every 2 months)
			manual curation
			automated curation
			automated annotation
			current and historical archived versions are available for download
			Download (Flatfiles)
			Download (ASN.1)
			Search (Entrez Nucleotide)
			Submit via BankIt
			Submit via NCBI Submission Portal
		Added:
			Download (Flatfiles)
			Download (ASN.1)
			Search (Entrez Nucleotide)
			Submit via BankIt
			Submit via NCBI Submission Portal
		Removed:
			FTP
			ftp://bio-mirror.net/biomirror/genbank/

	'homepage' has been modified:
		Before: http://www.ncbi.nlm.nih.gov/genbank/
		After: https://www.ncbi.nlm.nih.gov/genbank/

Edits to 'https://fairsharing.org/FAIRsharing.9kahy4' by 'The FAIRsharing Team' at 13:37, 26 Nov 2019 (approved):

	'miriam_id' has been modified:
		Before: None
		After: 

	'publications' has been modified:
		Before:
			GenBank.|Benson DA., Cavanaugh M., Clark K., Karsch-Mizrachi I., Lipman DJ., Ostell J., Sayers EW., |Nucleic Acids Res.|2013
			GenBank.|Benson DA., Karsch-Mizrachi I., Clark K., Lipman DJ., Ostell J., Sayers EW., |Nucleic Acids Res.|2012
			GenBank.|Benson DA., Karsch-Mizrachi I., Lipman DJ., Ostell J., Sayers EW., |Nucleic Acids Res.|2011
			GenBank.|Benson DA., Karsch-Mizrachi I., Lipman DJ., Ostell J., Sayers EW., |Nucleic Acids Res.|2009
			GenBank.|Benson DA., Karsch-Mizrachi I., Lipman DJ., Ostell J., Wheeler DL., |Nucleic Acids Res.|2008
		After:
			GenBank.|Benson DA., Cavanaugh M., Clark K., Karsch-Mizrachi I., Lipman DJ., Ostell J., Sayers EW., |Nucleic Acids Res.|2013
			GenBank.|Benson DA., Karsch-Mizrachi I., Clark K., Lipman DJ., Ostell J., Sayers EW., |Nucleic Acids Res.|2012
			GenBank.|Benson DA., Karsch-Mizrachi I., Lipman DJ., Ostell J., Sayers EW., |Nucleic Acids Res.|2011
			GenBank.|Benson DA., Karsch-Mizrachi I., Lipman DJ., Ostell J., Sayers EW., |Nucleic Acids Res.|2009
			GenBank.|Benson DA., Karsch-Mizrachi I., Lipman DJ., Ostell J., Wheeler DL., |Nucleic Acids Res.|2008
			GenBank.|Benson DA,Cavanaugh M,Clark K,Karsch-Mizrachi I,Lipman DJ,Ostell J,Sayers EW|Nucleic Acids Res|2012
		Added:
			GenBank.|Benson DA,Cavanaugh M,Clark K,Karsch-Mizrachi I,Lipman DJ,Ostell J,Sayers EW|Nucleic Acids Res|2012
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.9kahy4' by 'The FAIRsharing Team' at 22:53, 18 Jul 2018 (approved):

	'shortname' has been modified:
		Before: GenBank
		After:

In Collections

Open Science Prize

NIH-supported data repositories

Data Citation Implementation

Support

General

help	Entrez Programming Utilities Help
help	GenBank Submission Types
help	How to Submit
online documentation	Updating GenBank records
online documentation	GenBank Submissions Handbook
online documentation	Using BLAST at GenBank
wikipedia	Wikipedia Entry

Additional Information

Contact

NCBI Helpdesk

Tools

tbl2asn2 Submission Tool	https://www.ncbi.nlm.nih.gov/genbank/tbl2asn2/
BLAST	https://www.ncbi.nlm.nih.gov/blast

Access / Retrieve Data

Conditions of Use

Applies to: Data use

NCBI Website and Data Usage Policies and Disclaimers

Data Versioning

current and historical archived versions are available for download

No link recorded

Data Release

bimonthly release (as in every 2 months)	No link recorded
Download (ASN.1)	ftp://ftp.ncbi.nlm.nih.gov/ncbi-asn1

Data Curation

manual curation	No link recorded
automated curation	No link recorded
automated annotation	No link recorded
Submit via BankIt	https://www.ncbi.nlm.nih.gov/WebSub/?tool=genbank
Submit via NCBI Submission Portal	https://submit.ncbi.nlm.nih.gov/

Data Access

Download (Flatfiles)	ftp://ftp.ncbi.nlm.nih.gov/genbank
Search (Entrez Nucleotide)	https://www.ncbi.nlm.nih.gov/nucleotide/

SOAP Web Services

soap	http://eutils.ncbi.nlm.nih.gov/soap/v2.0/efetch_seq.wsdl

Publications

GenBank.

Benson DA., Cavanaugh M., Clark K., Karsch-Mizrachi I., Lipman DJ., Ostell J., Sayers EW.,
Nucleic Acids Res. 2013

View Paper (PubMed)

GenBank.

Benson DA., Karsch-Mizrachi I., Clark K., Lipman DJ., Ostell J., Sayers EW.,
Nucleic Acids Res. 2012

View Paper (PubMed)

GenBank.

Benson DA., Karsch-Mizrachi I., Lipman DJ., Ostell J., Sayers EW.,
Nucleic Acids Res. 2011

View Paper (PubMed)

GenBank.

Benson DA., Karsch-Mizrachi I., Lipman DJ., Ostell J., Sayers EW.,
Nucleic Acids Res. 2009

View Paper (PubMed)

GenBank.

Benson DA., Karsch-Mizrachi I., Lipman DJ., Ostell J., Wheeler DL.,
Nucleic Acids Res. 2008

View Paper (PubMed)

GenBank.

Benson DA,Cavanaugh M,Clark K,Karsch-Mizrachi I,Lipman DJ,Ostell J,Sayers EW
Nucleic Acids Res 2012

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

Minimum Information about any (x) Sequence

Terminology Artifacts

NCBI Taxonomy

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Implementing Policies

Credit

Record Maintainer

This record is in need of a maintainer. If you login, you'll be able to claim this record.

Funds

National Institutes of Health (NIH), Bethesda, MD, USA (Government body)

Maintains

National Center for Biotechnology Information (NCBI), Rockville, MD, USA (Government body)

GenBank

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