Databases > biodbcore-000034

ready Encyclopedia of DNA Elements at UCSC

Abbreviation:ENCODE

General Information
Encyclopedia of DNA Elements (ENCODE) has created a comprehensive parts list of functional elements in the human genome, including elements that act at the protein and RNA levels, and regulatory elements that control cells and circumstances in which a gene is active.



This record is maintained by dkarolchik

Record updated: Sept. 22, 2016, 4:50 p.m. by The FAIRsharing Team.



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Applies to: Data use
  • Data has usage restrictions for 9 months after public availability

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Credit

Record Maintainer

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Grant Number(s)

  • 3P41HG002371-10S1 (National Human Genome Research Institute)

  • 3U41HG004568-03S1 (National Human Genome Research Institute)

  • 5P41HG002371-10 (National Human Genome Research Institute)

  • 5U41HG004568-04 (National Human Genome Research Institute)


Publications

ENCODE data in the UCSC Genome Browser: year 5 update

Rosenbloom KR, Sloan CA, Malladi VS, Dreszer TR, Learned K, Kirkup VM, Wong MC, Maddren M, Fang R, Heitner SG, Lee BT, Barber GP, Harte RA, Diekhans M, Long JC, Wilder SP, Zweig AS, Karolchik D, Kuhn RM, Haussler D, Kent WJ
Nucleic Acids Research 2013

View Paper (PubMed) View Paper (DOI)

ENCODE whole-genome data in the UCSC Genome Browser: update 2012.

Rosenbloom KR, Dreszer TR, Long JC, Malladi VS, Sloan CA, Raney BJ, Cline MS, Karolchik D, Barber GP, Clawson H, Diekhans M, Fujita PA, Goldman M, Gravell RC, Harte RA, Hinrichs AS, Kirkup VM, Kuhn RM, Learned K, Maddren M, Meyer LR, Pohl A, Rhead B, Wong MC, Zweig AS, Haussler D, Kent WJ
Nucleic Acids Research 2012

View Paper (PubMed) View Paper (DOI)

ENCODE whole-genome data in the UCSC genome browser (2011 update)

Raney BJ, Cline MS, Rosenbloom KR, Dreszer TR, Learned K, Barber GP, Meyer LR, Sloan CA, Malladi VS, Roskin KM, Suh BB, Hinrichs AS, Clawson H, Zweig AS, Kirkup V, Fujita PA, Rhead B, Smith KE, Pohl A, Kuhn RM, Karolchik D, Haussler D, Kent WJ
Nucleic Acids Research 2011

View Paper (PubMed) View Paper (DOI)

ENCODE whole-genome data in the UCSC Genome Browser

Rosenbloom KR, Dreszer TR, Pheasant M, Barber GP, Meyer LR, Pohl A, Raney BJ, Wang T, Hinrichs AS, Zweig AS, Fujita PA, Learned K, Rhead B, Smith KE, Kuhn RM, Karolchik D, Haussler D, Kent WJ
Nucleic Acids Research 2010

View Paper (PubMed) View Paper (DOI)

The ENCODE project at UC Santa Cruz

Thomas DJ, Rosenbloom KR, Clawson H, Hinrichs, AS, Trumbower H, Raney BJ, Karolchik D, Barber GP, Harte RA, Hillman-Jackson J, Kuhn RM, Rhead BL, Smith KE, Thakkapallayil A, Zweig AS, The ENCODE Project Consortium, Haussler D, Kent WJ
Nucleic Acids Research 2007

View Paper (PubMed) View Paper (DOI)