databases > DOI:10.25504/FAIRsharing.v0hbjs

ready Encyclopedia of DNA Elements at UCSC

Abbreviation:ENCODE

General Information
Encyclopedia of DNA Elements (ENCODE) has created a comprehensive parts list of functional elements in the human genome, including elements that act at the protein and RNA levels, and regulatory elements that control cells and circumstances in which a gene is active. UCSC coordinated data for the ENCODE Consortium from its inception in 2003 (Pilot phase) to the end of the first 5 year phase of whole-genome data production in 2012. All data produced by ENCODE investigators and the results of ENCODE analysis projects from this period are hosted in the UCSC Genome browser and database.




How to cite this record FAIRsharing.org: ENCODE; Encyclopedia of DNA Elements at UCSC; DOI: https://doi.org/10.25504/FAIRsharing.v0hbjs; Last edited: April 10, 2018, 9:43 a.m.; Last accessed: Oct 18 2018 4:38 p.m.


This record is maintained by dkarolchik

Record updated: April 10, 2018, 9:39 a.m. by The FAIRsharing Team.

Show edit history



Tools

    No tools defined


Access / Retrieve Data

Conditions of Use

Applies to: Data use
  • Data has usage restrictions for 9 months after public availability

Data Versioning

Data Release

Data Curation

Data Access




Publications

ENCODE data in the UCSC Genome Browser: year 5 update

Rosenbloom KR, Sloan CA, Malladi VS, Dreszer TR, Learned K, Kirkup VM, Wong MC, Maddren M, Fang R, Heitner SG, Lee BT, Barber GP, Harte RA, Diekhans M, Long JC, Wilder SP, Zweig AS, Karolchik D, Kuhn RM, Haussler D, Kent WJ
Nucleic Acids Research 2013

View Paper (PubMed) View Publication

ENCODE whole-genome data in the UCSC Genome Browser: update 2012.

Rosenbloom KR, Dreszer TR, Long JC, Malladi VS, Sloan CA, Raney BJ, Cline MS, Karolchik D, Barber GP, Clawson H, Diekhans M, Fujita PA, Goldman M, Gravell RC, Harte RA, Hinrichs AS, Kirkup VM, Kuhn RM, Learned K, Maddren M, Meyer LR, Pohl A, Rhead B, Wong MC, Zweig AS, Haussler D, Kent WJ
Nucleic Acids Research 2012

View Paper (PubMed) View Publication

ENCODE whole-genome data in the UCSC genome browser (2011 update)

Raney BJ, Cline MS, Rosenbloom KR, Dreszer TR, Learned K, Barber GP, Meyer LR, Sloan CA, Malladi VS, Roskin KM, Suh BB, Hinrichs AS, Clawson H, Zweig AS, Kirkup V, Fujita PA, Rhead B, Smith KE, Pohl A, Kuhn RM, Karolchik D, Haussler D, Kent WJ
Nucleic Acids Research 2011

View Paper (PubMed) View Publication

ENCODE whole-genome data in the UCSC Genome Browser

Rosenbloom KR, Dreszer TR, Pheasant M, Barber GP, Meyer LR, Pohl A, Raney BJ, Wang T, Hinrichs AS, Zweig AS, Fujita PA, Learned K, Rhead B, Smith KE, Kuhn RM, Karolchik D, Haussler D, Kent WJ
Nucleic Acids Research 2010

View Paper (PubMed) View Publication

The ENCODE project at UC Santa Cruz

Thomas DJ, Rosenbloom KR, Clawson H, Hinrichs, AS, Trumbower H, Raney BJ, Karolchik D, Barber GP, Harte RA, Hillman-Jackson J, Kuhn RM, Rhead BL, Smith KE, Thakkapallayil A, Zweig AS, The ENCODE Project Consortium, Haussler D, Kent WJ
Nucleic Acids Research 2007

View Paper (PubMed) View Publication


Related Databases

Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

Funds

Maintains

Grant Number(s)

  • 3P41HG002371-10S1 (National Human Genome Research Institute)

  • 3U41HG004568-03S1 (National Human Genome Research Institute)

  • 5P41HG002371-10 (National Human Genome Research Institute)

  • 5U41HG004568-04 (National Human Genome Research Institute)