Edits to 'https://fairsharing.org/FAIRsharing.f5zx00' by 'The FAIRsharing Team' at 10:07, 23 Feb 2021 (approved):
'description' has been modified:
Before: The Expression Atlas is a free resource providing information on gene expression patterns under different biological conditions in a variety of species. Gene expression data is re-analysed in-house to detect genes showing interesting baseline and differential expression patterns, allowing a user to ask questions such as "what are the genes expressed in normal human liver" and "what genes are differentially expressed between water-stressed rice plants and controls with normal watering?". The resource features proteomics data sets provided by collaborators for corroboration between gene- and protein-level expression results. The latest component, Single Cell Expression Atlas, systematically reanalyses and visualises single cell RNA-sequencing datasets and helps answering questions like in what cell population a gene can act as a marker gene.
After: The Expression Atlas is a free resource providing information on gene expression patterns under different biological conditions in a variety of species. Gene expression data is re-analysed in-house to detect genes showing interesting baseline and differential expression patterns, allowing a user to ask questions such as "what are the genes expressed in normal human liver" and "what genes are differentially expressed between water-stressed rice plants and controls with normal watering?" The resource features proteomics data sets provided by collaborators for corroboration between gene- and protein-level expression results. The latest component, Single Cell Expression Atlas, systematically reanalyses and visualises single cell RNA-sequencing datasets and helps answer questions such as what cell population a gene can act as a marker gene.
'publications' has been modified:
Before:
Gene expression atlas at the European bioinformatics institute.|Kapushesky M., Emam I., Holloway E., Kurnosov P., Zorin A., Malone J., Rustici G., Williams E., Parkinson H., Brazma A., |Nucleic Acids Res.|2010
Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments.|Petryszak R, Burdett T, Fiorelli B, Fonseca NA, Gonzalez-Porta M, Hastings E, Huber W, Jupp S, Keays M, Kryvych N, McMurry J, Marioni JC, Malone J, Megy K, Rustici G, Tang AY, Taubert J, Williams E, Mannion O, Parkinson HE, Brazma A.|Nucleic Acids Res.|2014
Expression Atlas update--an integrated database of gene and protein expression in humans, animals and plants.|Petryszak R,Keays M,Tang YA,Fonseca NA,Barrera E,Burdett T,Fullgrabe A,Fuentes AM,Jupp S,Koskinen S,Mannion O,Huerta L,Megy K,Snow C,Williams E,Barzine M,Hastings E,Weisser H,Wright J,Jaiswal P,Huber W,Choudhary J,Parkinson HE,Brazma A|Nucleic Acids Res|2015
Expression Atlas: gene and protein expression across multiple studies and organisms.|Papatheodorou I,Fonseca NA,Keays M,Tang YA,Barrera E,Bazant W,Burke M,Fullgrabe A,Fuentes AM,George N,Huerta L,Koskinen S,Mohammed S,Geniza M,Preece J,Jaiswal P,Jarnuczak AF,Huber W,Stegle O,Vizcaino JA,Brazma A,Petryszak R|Nucleic Acids Res|2017
Expression Atlas update: from tissues to single cells|Irene Papatheodorou, Pablo Moreno, Jonathan Manning, Alfonso Muoz-Pomer Fuentes, Nancy George, Silvie Fexova, Nuno A Fonseca, Anja Fllgrabe, Matthew Green, Ni Huang, Laura Huerta, Haider Iqbal, Monica Jianu, Suhaib Mohammed, Lingyun Zhao, Andrew F Jarnuczak, Simon Jupp, John Marioni, Kerstin Meyer, Robert Petryszak, Cesar Augusto Prada Medina, Carlos Talavera-Lpez, Sarah Teichmann, Juan Antonio Vizcaino, Alvis Brazma|Nucleic Acids Research|2019
After:
Gene expression atlas at the European bioinformatics institute.|Kapushesky M., Emam I., Holloway E., Kurnosov P., Zorin A., Malone J., Rustici G., Williams E., Parkinson H., Brazma A., |Nucleic Acids Res.|2010
Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments.|Petryszak R, Burdett T, Fiorelli B, Fonseca NA, Gonzalez-Porta M, Hastings E, Huber W, Jupp S, Keays M, Kryvych N, McMurry J, Marioni JC, Malone J, Megy K, Rustici G, Tang AY, Taubert J, Williams E, Mannion O, Parkinson HE, Brazma A.|Nucleic Acids Res.|2014
Expression Atlas update--an integrated database of gene and protein expression in humans, animals and plants.|Petryszak R,Keays M,Tang YA,Fonseca NA,Barrera E,Burdett T,Fullgrabe A,Fuentes AM,Jupp S,Koskinen S,Mannion O,Huerta L,Megy K,Snow C,Williams E,Barzine M,Hastings E,Weisser H,Wright J,Jaiswal P,Huber W,Choudhary J,Parkinson HE,Brazma A|Nucleic Acids Res|2015
Expression Atlas: gene and protein expression across multiple studies and organisms.|Papatheodorou I,Fonseca NA,Keays M,Tang YA,Barrera E,Bazant W,Burke M,Fullgrabe A,Fuentes AM,George N,Huerta L,Koskinen S,Mohammed S,Geniza M,Preece J,Jaiswal P,Jarnuczak AF,Huber W,Stegle O,Vizcaino JA,Brazma A,Petryszak R|Nucleic Acids Res|2017
Expression Atlas update: from tissues to single cells|Irene Papatheodorou, Pablo Moreno, Jonathan Manning, Alfonso Muoz-Pomer Fuentes, Nancy George, Silvie Fexova et al.,|Nucleic Acids Research|2019
Added:
Expression Atlas update: from tissues to single cells|Irene Papatheodorou, Pablo Moreno, Jonathan Manning, Alfonso Muoz-Pomer Fuentes, Nancy George, Silvie Fexova et al.,|Nucleic Acids Research|2019
Removed:
Expression Atlas update: from tissues to single cells|Irene Papatheodorou, Pablo Moreno, Jonathan Manning, Alfonso Muoz-Pomer Fuentes, Nancy George, Silvie Fexova, Nuno A Fonseca, Anja Fllgrabe, Matthew Green, Ni Huang, Laura Huerta, Haider Iqbal, Monica Jianu, Suhaib Mohammed, Lingyun Zhao, Andrew F Jarnuczak, Simon Jupp, John Marioni, Kerstin Meyer, Robert Petryszak, Cesar Augusto Prada Medina, Carlos Talavera-Lpez, Sarah Teichmann, Juan Antonio Vizcaino, Alvis Brazma|Nucleic Acids Research|2019
Edits to 'https://fairsharing.org/FAIRsharing.f5zx00' by 'The FAIRsharing Team' at 20:08, 11 Feb 2020 (approved):
'onto_disciplines' has been modified:
Before:
Life Science
Proteomics
Transcriptomics
After:
Proteomics
Transcriptomics
Added:
Removed:
Life Science
'countries' has been modified:
Before:
European Union
United Kingdom
After:
Austria
Belgium
Croatia
Czech Republic
Denmark
Finland
France
Germany
Greece
Hungary
Iceland
Israel
Italy
Lithuania
Luxembourg
Malta
Montenegro
Netherlands
Norway
Portugal
Republic of Ireland
Slovakia
Spain
Sweden
Switzerland
United Kingdom
Added:
Austria
Belgium
Croatia
Czech Republic
Denmark
Finland
France
Germany
Greece
Hungary
Iceland
Israel
Italy
Lithuania
Luxembourg
Malta
Montenegro
Netherlands
Norway
Portugal
Republic of Ireland
Slovakia
Spain
Sweden
Switzerland
Removed:
European Union
Edits to 'https://fairsharing.org/FAIRsharing.f5zx00' by 'arrayexpress1' at 16:18, 17 Jan 2020 (approved):
'supportLinks' has been modified:
Before:
FAQ|https://www.ebi.ac.uk/gxa/FAQ.html
TeSS training|https://tess.elixir-europe.org/materials/expression-atlas-quick-tour
contact form|https://www.ebi.ac.uk/support/gxa
help|https://www.ebi.ac.uk/gxa/sc/help.html
help|https://www.ebi.ac.uk/gxa/help/index.html
online documentation|https://www.ebi.ac.uk/gxa/about.html
online documentation|https://github.com/ebi-gene-expression-group/atlas
training|https://www.ebi.ac.uk/training/online/course/life-cell-cell-introduction-single-cell-expression-atlas
training|https://www.ebi.ac.uk/training/online/course/explore-gene-expression-across-species-expression-atlas
twitter|@ExpressionAtlas
wikipedia|https://en.wikipedia.org/wiki/Expression_Atlas
After:
FAQ|https://www.ebi.ac.uk/gxa/FAQ.html
TeSS training|https://tess.elixir-europe.org/materials/expression-atlas-quick-tour
contact form|https://www.ebi.ac.uk/support/gxa
help|https://www.ebi.ac.uk/gxa/sc/help.html
help|https://www.ebi.ac.uk/gxa/help/index.html
online documentation|https://www.ebi.ac.uk/gxa/about.html
training|https://www.ebi.ac.uk/training/online/course/life-cell-cell-introduction-single-cell-expression-atlas
training|https://www.ebi.ac.uk/training/online/course/explore-gene-expression-across-species-expression-atlas
twitter|@ExpressionAtlas
wikipedia|https://en.wikipedia.org/wiki/Expression_Atlas
Added:
Removed:
online documentation|https://github.com/ebi-gene-expression-group/atlas
'tools' has been modified:
Before:
iRAP||http://nunofonseca.github.io/irap/
ExpressionAtlas R Package on Bioconductor||https://www.bioconductor.org/packages/release/bioc/html/ExpressionAtlas.html
Expression Atlas Heatmap||https://github.com/ebi-gene-expression-group/atlas-heatmap
After:
iRAP||http://nunofonseca.github.io/irap/
ExpressionAtlas R Package on Bioconductor||https://www.bioconductor.org/packages/release/bioc/html/ExpressionAtlas.html
Expression Atlas Heatmap||https://github.com/ebi-gene-expression-group/atlas-heatmap
Expression Atlas web application (core components)||https://github.com/ebi-gene-expression-group/atlas-web-core
Expression Atlas web application (bulk components)||https://github.com/ebi-gene-expression-group/atlas-web-bulk
Expression Atlas web application (single cell components)||https://github.com/ebi-gene-expression-group/atlas-web-single-cell
Added:
Expression Atlas web application (core components)||https://github.com/ebi-gene-expression-group/atlas-web-core
Expression Atlas web application (bulk components)||https://github.com/ebi-gene-expression-group/atlas-web-bulk
Expression Atlas web application (single cell components)||https://github.com/ebi-gene-expression-group/atlas-web-single-cell
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.f5zx00' by 'arrayexpress1' at 15:10, 15 Jan 2020 (approved):
'standardsImplemented' has been modified:
Before:
Experimental Factor Ontology
Gene Ontology
OmicsDI XML format
After:
MicroArray Gene Expression Tabular Format
Experimental Factor Ontology
Gene Ontology
OmicsDI XML format
Added:
MicroArray Gene Expression Tabular Format
Removed:
'related_databases' has been modified:
Before:
Animal Transcription Factor Database
ArrayExpress
Open Targets
Omics Discovery Index
Complex Portal
Sex-Associated Gene Database
After:
Animal Transcription Factor Database
Gramene: A curated, open-source, integrated data resource for comparative functional genomics in plants
ArrayExpress
PRoteomics IDEntifications database
Open Targets
Omics Discovery Index
Complex Portal
Sex-Associated Gene Database
Added:
Gramene: A curated, open-source, integrated data resource for comparative functional genomics in plants
PRoteomics IDEntifications database
Removed:
'supportLinks' has been modified:
Before:
FAQ|https://www.ebi.ac.uk/gxa/FAQ.html
TeSS training|https://tess.elixir-europe.org/materials/expression-atlas-quick-tour
contact form|https://www.ebi.ac.uk/support/gxa
help|https://www.ebi.ac.uk/gxa/help/index.html
online documentation|https://github.com/ebi-gene-expression-group/atlas
online documentation|https://www.ebi.ac.uk/gxa/about.html
twitter|@ExpressionAtlas
wikipedia|https://en.wikipedia.org/wiki/Expression_Atlas
After:
FAQ|https://www.ebi.ac.uk/gxa/FAQ.html
TeSS training|https://tess.elixir-europe.org/materials/expression-atlas-quick-tour
contact form|https://www.ebi.ac.uk/support/gxa
help|https://www.ebi.ac.uk/gxa/sc/help.html
help|https://www.ebi.ac.uk/gxa/help/index.html
online documentation|https://www.ebi.ac.uk/gxa/about.html
online documentation|https://github.com/ebi-gene-expression-group/atlas
training|https://www.ebi.ac.uk/training/online/course/life-cell-cell-introduction-single-cell-expression-atlas
training|https://www.ebi.ac.uk/training/online/course/explore-gene-expression-across-species-expression-atlas
twitter|@ExpressionAtlas
wikipedia|https://en.wikipedia.org/wiki/Expression_Atlas
Added:
help|https://www.ebi.ac.uk/gxa/sc/help.html
training|https://www.ebi.ac.uk/training/online/course/life-cell-cell-introduction-single-cell-expression-atlas
training|https://www.ebi.ac.uk/training/online/course/explore-gene-expression-across-species-expression-atlas
Removed:
'description' has been modified:
Before: The Expression Atlas is a free resource providing information on gene expression patterns under different biological conditions. Gene expression data is re-analysed in-house to detect genes showing interesting baseline and differential expression patterns, allowing a user to ask questions such as "what are the genes expressed in normal human liver" and "what genes are differentially expressed between water-stressed rice plants and controls with normal watering?". The resource also features a few proteomics data sets provided by collaborators for corroboration between gene- and protein-level expression results.
After: The Expression Atlas is a free resource providing information on gene expression patterns under different biological conditions in a variety of species. Gene expression data is re-analysed in-house to detect genes showing interesting baseline and differential expression patterns, allowing a user to ask questions such as "what are the genes expressed in normal human liver" and "what genes are differentially expressed between water-stressed rice plants and controls with normal watering?". The resource features proteomics data sets provided by collaborators for corroboration between gene- and protein-level expression results. The latest component, Single Cell Expression Atlas, systematically reanalyses and visualises single cell RNA-sequencing datasets and helps answering questions like in what cell population a gene can act as a marker gene.
'user_defined_tags' has been modified:
Before:
After:
Single cell gene expression
Added:
Single cell gene expression
Removed:
'onto_disciplines' has been modified:
Before:
Life Science
Proteomics
After:
Life Science
Proteomics
Transcriptomics
Added:
Transcriptomics
Removed:
'dataProcesses' has been modified:
Before:
Data Download
Release Notes
Browse Data
After:
Data Download
Release Notes
Browse Bulk Data
Browse Single Cell Data
Added:
Browse Bulk Data
Browse Single Cell Data
Removed:
Browse Data
'onto_domains' has been modified:
Before:
Differential gene expression analysis
Gene expression data
RNA-seq assay
After:
Differential gene expression analysis
Gene expression data
RNA-seq assay
gene expression
Added:
gene expression
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.f5zx00' by 'arrayexpress1' at 21:14, 04 Nov 2019 (approved):
'publications' has been modified:
Before:
Gene expression atlas at the European bioinformatics institute.|Kapushesky M., Emam I., Holloway E., Kurnosov P., Zorin A., Malone J., Rustici G., Williams E., Parkinson H., Brazma A., |Nucleic Acids Res.|2010
Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments.|Petryszak R, Burdett T, Fiorelli B, Fonseca NA, Gonzalez-Porta M, Hastings E, Huber W, Jupp S, Keays M, Kryvych N, McMurry J, Marioni JC, Malone J, Megy K, Rustici G, Tang AY, Taubert J, Williams E, Mannion O, Parkinson HE, Brazma A.|Nucleic Acids Res.|2014
Expression Atlas update--an integrated database of gene and protein expression in humans, animals and plants.|Petryszak R,Keays M,Tang YA,Fonseca NA,Barrera E,Burdett T,Fullgrabe A,Fuentes AM,Jupp S,Koskinen S,Mannion O,Huerta L,Megy K,Snow C,Williams E,Barzine M,Hastings E,Weisser H,Wright J,Jaiswal P,Huber W,Choudhary J,Parkinson HE,Brazma A|Nucleic Acids Res|2015
Expression Atlas: gene and protein expression across multiple studies and organisms.|Papatheodorou I,Fonseca NA,Keays M,Tang YA,Barrera E,Bazant W,Burke M,Fullgrabe A,Fuentes AM,George N,Huerta L,Koskinen S,Mohammed S,Geniza M,Preece J,Jaiswal P,Jarnuczak AF,Huber W,Stegle O,Vizcaino JA,Brazma A,Petryszak R|Nucleic Acids Res|2017
After:
Gene expression atlas at the European bioinformatics institute.|Kapushesky M., Emam I., Holloway E., Kurnosov P., Zorin A., Malone J., Rustici G., Williams E., Parkinson H., Brazma A., |Nucleic Acids Res.|2010
Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments.|Petryszak R, Burdett T, Fiorelli B, Fonseca NA, Gonzalez-Porta M, Hastings E, Huber W, Jupp S, Keays M, Kryvych N, McMurry J, Marioni JC, Malone J, Megy K, Rustici G, Tang AY, Taubert J, Williams E, Mannion O, Parkinson HE, Brazma A.|Nucleic Acids Res.|2014
Expression Atlas update--an integrated database of gene and protein expression in humans, animals and plants.|Petryszak R,Keays M,Tang YA,Fonseca NA,Barrera E,Burdett T,Fullgrabe A,Fuentes AM,Jupp S,Koskinen S,Mannion O,Huerta L,Megy K,Snow C,Williams E,Barzine M,Hastings E,Weisser H,Wright J,Jaiswal P,Huber W,Choudhary J,Parkinson HE,Brazma A|Nucleic Acids Res|2015
Expression Atlas: gene and protein expression across multiple studies and organisms.|Papatheodorou I,Fonseca NA,Keays M,Tang YA,Barrera E,Bazant W,Burke M,Fullgrabe A,Fuentes AM,George N,Huerta L,Koskinen S,Mohammed S,Geniza M,Preece J,Jaiswal P,Jarnuczak AF,Huber W,Stegle O,Vizcaino JA,Brazma A,Petryszak R|Nucleic Acids Res|2017
Expression Atlas update: from tissues to single cells|Irene Papatheodorou, Pablo Moreno, Jonathan Manning, Alfonso Muoz-Pomer Fuentes, Nancy George, Silvie Fexova, Nuno A Fonseca, Anja Fllgrabe, Matthew Green, Ni Huang, Laura Huerta, Haider Iqbal, Monica Jianu, Suhaib Mohammed, Lingyun Zhao, Andrew F Jarnuczak, Simon Jupp, John Marioni, Kerstin Meyer, Robert Petryszak, Cesar Augusto Prada Medina, Carlos Talavera-Lpez, Sarah Teichmann, Juan Antonio Vizcaino, Alvis Brazma|Nucleic Acids Research|2019
Added:
Expression Atlas update: from tissues to single cells|Irene Papatheodorou, Pablo Moreno, Jonathan Manning, Alfonso Muoz-Pomer Fuentes, Nancy George, Silvie Fexova, Nuno A Fonseca, Anja Fllgrabe, Matthew Green, Ni Huang, Laura Huerta, Haider Iqbal, Monica Jianu, Suhaib Mohammed, Lingyun Zhao, Andrew F Jarnuczak, Simon Jupp, John Marioni, Kerstin Meyer, Robert Petryszak, Cesar Augusto Prada Medina, Carlos Talavera-Lpez, Sarah Teichmann, Juan Antonio Vizcaino, Alvis Brazma|Nucleic Acids Research|2019
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.f5zx00' by 'The FAIRsharing Team' at 10:27, 17 Jan 2019 (approved):
'organizations' has been modified:
Before:
Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains
European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Undefined
After:
European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Funds
Added:
European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Funds
Removed:
Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains
European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Undefined
'supportLinks' has been modified:
Before:
FAQ|http://www.ebi.ac.uk/gxa/FAQ.html
TeSS training|https://tess.elixir-europe.org/materials/expression-atlas-quick-tour
help|http://www.ebi.ac.uk/gxa/help/
wikipedia|https://en.wikipedia.org/wiki/Expression_Atlas
After:
FAQ|https://www.ebi.ac.uk/gxa/FAQ.html
TeSS training|https://tess.elixir-europe.org/materials/expression-atlas-quick-tour
contact form|https://www.ebi.ac.uk/support/gxa
help|https://www.ebi.ac.uk/gxa/help/index.html
online documentation|https://github.com/ebi-gene-expression-group/atlas
online documentation|https://www.ebi.ac.uk/gxa/about.html
twitter|@ExpressionAtlas
wikipedia|https://en.wikipedia.org/wiki/Expression_Atlas
Added:
FAQ|https://www.ebi.ac.uk/gxa/FAQ.html
contact form|https://www.ebi.ac.uk/support/gxa
help|https://www.ebi.ac.uk/gxa/help/index.html
online documentation|https://github.com/ebi-gene-expression-group/atlas
online documentation|https://www.ebi.ac.uk/gxa/about.html
twitter|@ExpressionAtlas
Removed:
FAQ|http://www.ebi.ac.uk/gxa/FAQ.html
help|http://www.ebi.ac.uk/gxa/help/
'dataProcesses' has been modified:
Before:
monthly release
manual curation
versioning by release
web interface
file download(tab-delimited)
web service (JSON,XML)
After:
Release Notes
Data Download
Browse Data
Added:
Release Notes
Data Download
Browse Data
Removed:
monthly release
manual curation
versioning by release
web interface
file download(tab-delimited)
web service (JSON,XML)
'miriam_id' has been modified:
Before: None
After: MIR:00000379
'publications' has been modified:
Before:
Gene expression atlas at the European bioinformatics institute.|Kapushesky M., Emam I., Holloway E., Kurnosov P., Zorin A., Malone J., Rustici G., Williams E., Parkinson H., Brazma A., |Nucleic Acids Res.|2010
Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments.|Petryszak R, Burdett T, Fiorelli B, Fonseca NA, Gonzalez-Porta M, Hastings E, Huber W, Jupp S, Keays M, Kryvych N, McMurry J, Marioni JC, Malone J, Megy K, Rustici G, Tang AY, Taubert J, Williams E, Mannion O, Parkinson HE, Brazma A.|Nucleic Acids Res.|2014
After:
Gene expression atlas at the European bioinformatics institute.|Kapushesky M., Emam I., Holloway E., Kurnosov P., Zorin A., Malone J., Rustici G., Williams E., Parkinson H., Brazma A., |Nucleic Acids Res.|2010
Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments.|Petryszak R, Burdett T, Fiorelli B, Fonseca NA, Gonzalez-Porta M, Hastings E, Huber W, Jupp S, Keays M, Kryvych N, McMurry J, Marioni JC, Malone J, Megy K, Rustici G, Tang AY, Taubert J, Williams E, Mannion O, Parkinson HE, Brazma A.|Nucleic Acids Res.|2014
Expression Atlas update--an integrated database of gene and protein expression in humans, animals and plants.|Petryszak R,Keays M,Tang YA,Fonseca NA,Barrera E,Burdett T,Fullgrabe A,Fuentes AM,Jupp S,Koskinen S,Mannion O,Huerta L,Megy K,Snow C,Williams E,Barzine M,Hastings E,Weisser H,Wright J,Jaiswal P,Huber W,Choudhary J,Parkinson HE,Brazma A|Nucleic Acids Res|2015
Expression Atlas: gene and protein expression across multiple studies and organisms.|Papatheodorou I,Fonseca NA,Keays M,Tang YA,Barrera E,Bazant W,Burke M,Fullgrabe A,Fuentes AM,George N,Huerta L,Koskinen S,Mohammed S,Geniza M,Preece J,Jaiswal P,Jarnuczak AF,Huber W,Stegle O,Vizcaino JA,Brazma A,Petryszak R|Nucleic Acids Res|2017
Added:
Expression Atlas update--an integrated database of gene and protein expression in humans, animals and plants.|Petryszak R,Keays M,Tang YA,Fonseca NA,Barrera E,Burdett T,Fullgrabe A,Fuentes AM,Jupp S,Koskinen S,Mannion O,Huerta L,Megy K,Snow C,Williams E,Barzine M,Hastings E,Weisser H,Wright J,Jaiswal P,Huber W,Choudhary J,Parkinson HE,Brazma A|Nucleic Acids Res|2015
Expression Atlas: gene and protein expression across multiple studies and organisms.|Papatheodorou I,Fonseca NA,Keays M,Tang YA,Barrera E,Bazant W,Burke M,Fullgrabe A,Fuentes AM,George N,Huerta L,Koskinen S,Mohammed S,Geniza M,Preece J,Jaiswal P,Jarnuczak AF,Huber W,Stegle O,Vizcaino JA,Brazma A,Petryszak R|Nucleic Acids Res|2017
Removed:
'accessPoints' has been modified:
Before:
SOAP|http://www.biocatalogue.org/services/2078#operations|IntAct PSICQUIC Service
After:
REST|https://www.ebi.ac.uk/fg/rnaseq/api/|RNASeq-er API
Added:
REST|https://www.ebi.ac.uk/fg/rnaseq/api/|RNASeq-er API
Removed:
SOAP|http://www.biocatalogue.org/services/2078#operations|IntAct PSICQUIC Service
'tools' has been modified:
Before:
iRAP||http://nunofonseca.github.io/irap/
After:
iRAP||http://nunofonseca.github.io/irap/
ExpressionAtlas R Package on Bioconductor||https://www.bioconductor.org/packages/release/bioc/html/ExpressionAtlas.html
Expression Atlas Heatmap||https://github.com/ebi-gene-expression-group/atlas-heatmap
Added:
ExpressionAtlas R Package on Bioconductor||https://www.bioconductor.org/packages/release/bioc/html/ExpressionAtlas.html
Expression Atlas Heatmap||https://github.com/ebi-gene-expression-group/atlas-heatmap
Removed: