databases > DOI:10.25504/FAIRsharing.f5zx00

ready Expression Atlas

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General Information
The Expression Atlas is a free resource providing information on gene expression patterns under different biological conditions. Gene expression data is re-analysed in-house to detect genes showing interesting baseline and differential expression patterns, allowing a user to ask questions such as "what are the genes expressed in normal human liver" and "what genes are differentially expressed between water-stressed rice plants and controls with normal watering?". The resource also features a few proteomics data sets provided by collaborators for corroboration between gene- and protein-level expression results.

Homepage http://www.ebi.ac.uk/gxa

Developed in European Union , United Kingdom

Created in 2011

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How to cite this record FAIRsharing.org: Expression Atlas; Expression Atlas; DOI: https://doi.org/10.25504/FAIRsharing.f5zx00; Last edited: Feb. 22, 2018, 2:43 p.m.; Last accessed: Nov 20 2018 4:20 p.m.


This record is maintained by arrayexpress1

Record updated: Aug. 11, 2016, 11:10 a.m. by The FAIRsharing Team.



In Collections
ELIXIR node contributed resources



Access / Retrieve Data

Conditions of Use

Applies to: Data use Applies to: Database software

Data Versioning

versioning by release http://www.ebi.ac.uk/gxa/release-notes.html

Data Release

monthly release http://www.ebi.ac.uk/gxa/release-notes.html

Data Curation

manual curation http://www.ebi.ac.uk/gxa/FAQ.html#exptChosen

Data Access

web interface http://www.ebi.ac.uk/gxa
file download(tab-delimited) No link recorded
web service (JSON,XML) No link recorded

SOAP Web Services

IntAct PSICQUIC Service http://www.biocatalogue.org/services/2078#operations


Publications

Gene expression atlas at the European bioinformatics institute.

Kapushesky M., Emam I., Holloway E., Kurnosov P., Zorin A., Malone J., Rustici G., Williams E., Parkinson H., Brazma A.,
Nucleic Acids Res. 2010

View Paper (PubMed)

Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments.

Petryszak R, Burdett T, Fiorelli B, Fonseca NA, Gonzalez-Porta M, Hastings E, Huber W, Jupp S, Keays M, Kryvych N, McMurry J, Marioni JC, Malone J, Megy K, Rustici G, Tang AY, Taubert J, Williams E, Mannion O, Parkinson HE, Brazma A.
Nucleic Acids Res. 2014

View Paper (PubMed) View Publication

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