Databases > DOI:10.25504/FAIRsharing.ae956n
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ready IMG/M: the integrated metagenome data management and comparative analysis system

General Information
The Integrated Microbial Genomes (IMG) system serves as a community resource for analysis and annotation of genome and metagenome datasets in a comprehensive comparative context. The IMG data warehouse integrates genome and metagenome datasets provided by IMG users with a comprehensive set of publicly available genome and metagenome datasets.

Homepage http://img.jgi.doe.gov/cgi-bin/m/main.cgi

Developed in United States

Created in 2006






How to cite this record FAIRsharing.org: IMG/M: the integrated metagenome data management and comparative analysis system; IMG/M: the integrated metagenome data management and comparative analysis system; DOI: 10.25504/FAIRsharing.ae956n; Last edited: Feb. 22, 2018, 2:43 p.m.; Last accessed: Jul 16 2018 11:51 a.m.


Record updated: Jan. 12, 2018, 2:49 p.m. by The FAIRsharing Team.



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    No tools defined


Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Versioning

no versioning policy No link recorded

Data Release

quarterly release No link recorded

Data Curation

manual curation No link recorded
automated functional prediction for IMG term assignment, pathway assertion,phenotype prediction. No link recorded

Data Access

web interface No link recorded
file download(tab-delimited,XLS) No link recorded
FTP download No link recorded



Publications

An experimental metagenome data management and analysis system.

Markowitz VM., Ivanova N., Palaniappan K., Szeto E., Korzeniewski F., Lykidis A., Anderson I., Mavromatis K., Mavrommatis K., Kunin V., Garcia Martin H., Dubchak I., Hugenholtz P., Kyrpides NC.,
Bioinformatics 2006

View Paper (PubMed)

IMG/M: a data management and analysis system for metagenomes.

Markowitz VM., Ivanova NN., Szeto E., Palaniappan K., Chu K., Dalevi D., Chen IM., Grechkin Y., Dubchak I., Anderson I., Lykidis A., Mavromatis K., Hugenholtz P., Kyrpides NC.,
Nucleic Acids Res. 2008

View Paper (PubMed) View Paper (DOI)

IMG 4 version of the integrated microbial genomes comparative analysis system.

Markowitz VM,Chen IM,Palaniappan K,Chu K,Szeto E,Pillay M,Ratner A,Huang J,Woyke T,Huntemann M,Anderson I,Billis K,Varghese N,Mavromatis K,Pati A,Ivanova NN,Kyrpides NC
Nucleic Acids Res 2013

View Paper (PubMed) View Paper (DOI)

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Grant Number(s)

  • DE-AC02-05CH11231 (US Department of Energy)