IMG/M: the integrated metagenome data management and comparative analysis system
Homepage http://img.jgi.doe.gov/cgi-bin/m/main.cgi
Countries that developed this resource United States
Created in 2006
Taxonomic range
Knowledge Domains
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How to cite this record FAIRsharing.org: IMG/M: the integrated metagenome data management and comparative analysis system; IMG/M: the integrated metagenome data management and comparative analysis system; DOI: https://doi.org/10.25504/FAIRsharing.ae956n; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Sep 17 2019 1:30 p.m.
Record updated: Nov. 21, 2018, 11:02 a.m. by The FAIRsharing Team.
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| forum | https://groups.google.com/a/lbl.gov/foru ... |
| online documentation | https://sites.google.com/a/lbl.gov/img-f ... |
| training | https://sites.google.com/a/lbl.gov/img-f ... |
Additional Information
| Contact | Victor M. Markowitz |
Conditions of Use
Applies to: Data use- JGI Data Management Policy, Practices & Resources
- Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported (CC BY-NC-SA 3.0)
Data Versioning
| no versioning policy | No link recorded |
Data Release
| quarterly release | No link recorded |
Data Curation
| manual curation | No link recorded |
| automated functional prediction for IMG term assignment, pathway assertion,phenotype prediction. | No link recorded |
Data Access
| web interface | No link recorded |
| file download(tab-delimited,XLS) | No link recorded |
| FTP download | No link recorded |
An experimental metagenome data management and analysis system.
Markowitz VM., Ivanova N., Palaniappan K., Szeto E., Korzeniewski F., Lykidis A., Anderson I., Mavromatis K., Mavrommatis K., Kunin V., Garcia Martin H., Dubchak I., Hugenholtz P., Kyrpides NC.,
Bioinformatics 2006
IMG/M: a data management and analysis system for metagenomes.
Markowitz VM., Ivanova NN., Szeto E., Palaniappan K., Chu K., Dalevi D., Chen IM., Grechkin Y., Dubchak I., Anderson I., Lykidis A., Mavromatis K., Hugenholtz P., Kyrpides NC.,
Nucleic Acids Res. 2008
IMG 4 version of the integrated microbial genomes comparative analysis system.
Markowitz VM,Chen IM,Palaniappan K,Chu K,Szeto E,Pillay M,Ratner A,Huang J,Woyke T,Huntemann M,Anderson I,Billis K,Varghese N,Mavromatis K,Pati A,Ivanova NN,Kyrpides NC
Nucleic Acids Res 2013
Reporting Guidelines
No guidelines defined
Terminology Artifacts
Models and Formats
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
This record is not implemented by any policy.
Record Maintainer
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Funds
United States Department of Energy (Government body)
Maintains
Biological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, CA, USA (University)
Grant Number(s)
DE-AC02-05CH11231 (United States Department of Energy)
