Identifiers.org Registry

Abbreviation:Identifiers.org

General Information

The core of the Registry is a catalogue of data collections (corresponding to e.g. controlled vocabularies, databases), their URIs and the corresponding physical URLs (or resources). These resources are monitored daily to ensure data accessibility and the validity of the resolution mechanism.

Homepage https://identifiers.org/

Countries that developed this resource European Union , United Kingdom

Created in 2006

Taxonomic range

All

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: Identifiers.org; Identifiers.org Registry; DOI: https://doi.org/10.25504/FAIRsharing.n14rc8; Last edited: Jan. 17, 2019, 10:54 a.m.; Last accessed: Aug 19 2019 12:45 p.m.

Publication for citation Identifiers.org and MIRIAM Registry: community resources to provide persistent identification. Juty N,Le Novere N,Laibe C; Nucleic Acids Res ; 2011; 10.1093/nar/gkr1097;

This record is maintained by sarala

Record updated: Jan. 17, 2019, 10:53 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'The FAIRsharing Team' at 10:53, 17 Jan 2019 (approved):

	'organizations' has been modified:
		Before:
			Biotechnology and Biological Sciences Research Council (BBSRC), UK|https://bbsrc.ukri.org|Funds
			Open PHACTS|http://www.openphacts.org/|Funds
			ELIXIR-Hub, UK|http://elixir-europe.org/|Maintains
			Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains
			European Molecular Biology Laboratory (EMBL), Heidelberg, Germany|http://www.embl.org|Funds
			National Institute of General Medical Sciences (NIGMS), Bethesda, MD, USA|http://www.nigms.nih.gov|Funds
		After:
			Biotechnology and Biological Sciences Research Council (BBSRC), UK|https://bbsrc.ukri.org|Funds
			Open PHACTS|http://www.openphacts.org/|Funds
			European Molecular Biology Laboratory (EMBL), Heidelberg, Germany|http://www.embl.org|Funds
			National Institute of General Medical Sciences (NIGMS), Bethesda, MD, USA|http://www.nigms.nih.gov|Funds
			ELIXIR-Hub, UK|http://elixir-europe.org/|Maintains
			European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
		Added:
			European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
		Removed:
			Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains

	'licences' has been modified:
		Before:
			Apache License 2.0|http://www.apache.org/licenses/LICENSE-2.0|Software
			Creative Commons CC0 1.0 Universal (CC0 1.0) Public Domain Dedication|https://creativecommons.org/publicdomain/zero/1.0/|Data
		After:
			Creative Commons Attribution 4.0 International (CC BY 4.0)|https://creativecommons.org/licenses/by/4.0/|Data
		Added:
			Creative Commons Attribution 4.0 International (CC BY 4.0)|https://creativecommons.org/licenses/by/4.0/|Data
		Removed:
			Apache License 2.0|http://www.apache.org/licenses/LICENSE-2.0|Software
			Creative Commons CC0 1.0 Universal (CC0 1.0) Public Domain Dedication|https://creativecommons.org/publicdomain/zero/1.0/|Data

	'dataProcesses' has been modified:
		Before:
			continuous release (live database)
			Request a prefix
			Download
			browse
			search
		After:
			continuous release (live database)
			Request a prefix
			Download
			Browse
			Search
		Added:
			Browse
			Search
		Removed:
			browse
			search

	'miriam_id' has been modified:
		Before: None
		After: MIR:00000599

	'accessPoints' has been modified:
		Before:
			REST|https://identifiers.org/rest|Identifiers.org Registry service
		After:
			REST|https://identifiers.org/restws|Identifiers.org Registry service
		Added:
			REST|https://identifiers.org/restws|Identifiers.org Registry service
		Removed:
			REST|https://identifiers.org/rest|Identifiers.org Registry service

	'tools' has been modified:
		Before:
		After:
			SPARQL Endpoint||https://identifiers.org/services/sparql
			.info service||https://identifiers.org/info
		Added:
			SPARQL Endpoint||https://identifiers.org/services/sparql
			.info service||https://identifiers.org/info
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'The FAIRsharing Team' at 11:19, 23 Nov 2017 (approved):

	'name' has been modified:
		Before: Sarala Wimalaratne
		After: Identifiers.org Registry

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'The FAIRsharing Team' at 11:15, 23 Nov 2017 (approved):

	'name' has been modified:
		Before: Sarala Wimalaratne
		After: Identifiers.org Registry

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'The FAIRsharing Team' at 11:11, 23 Nov 2017 (approved):

	'name' has been modified:
		Before: Sarala Wimalaratne
		After: Identifiers.org Registry

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'The FAIRsharing Team' at 11:11, 23 Nov 2017 (approved):

	'name' has been modified:
		Before: Sarala Wimalaratne
		After: Identifiers.org Registry

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'The FAIRsharing Team' at 10:58, 23 Nov 2017 (approved):

	'name' has been modified:
		Before: Sarala Wimalaratne
		After: Identifiers.org Registry

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'The FAIRsharing Team' at 10:28, 23 Nov 2017 (approved):

	'name' has been modified:
		Before: Sarala Wimalaratne
		After: Identifiers.org Registry

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'sarala' at 10:17, 23 Nov 2017 (approved):

	'contactName' has been modified:
		Before:
			Nicolas Le Novre
		After:
			
		Added:
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'sarala' at 10:16, 23 Nov 2017 (approved):

	'supportLinks' has been modified:
		Before:
			http://www.ebi.ac.uk/miriam/main/mdb?section=faq
			biomodels-net-support@lists.sf.net
			http://www.ebi.ac.uk/miriam/main/mdb?section=docs
			@biomodels
			https://en.wikipedia.org/wiki/MIRIAM_Registry
		After:
			http://www.ebi.ac.uk/miriam/main/mdb?section=faq
			identifiers-org@ebi.ac.uk
			https://identifiers.org/documentation
			@IdentifiersOrg
		Added:
			identifiers-org@ebi.ac.uk
			https://identifiers.org/documentation
			@IdentifiersOrg
		Removed:
			biomodels-net-support@lists.sf.net
			http://www.ebi.ac.uk/miriam/main/mdb?section=docs
			@biomodels
			https://en.wikipedia.org/wiki/MIRIAM_Registry

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'sarala' at 10:15, 23 Nov 2017 (approved):

	'dataProcesses' has been modified:
		Before:
			continuous release (live database)
			Curated data
			access to historical files available
			Download
			browse
			submit
			search
		After:
			continuous release (live database)
			Request a prefix
			Download
			browse
			search
		Added:
			Request a prefix
		Removed:
			Curated data
			access to historical files available
			submit

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'sarala' at 10:14, 23 Nov 2017 (approved):

	'accessPoints' has been modified:
		Before:
			Other|http://www.ebi.ac.uk/miriam/main/mdb?section=ws_help
			REST|http://www.ebi.ac.uk/miriamws/main/rest/
		After:
			REST|https://identifiers.org/rest
		Added:
			REST|https://identifiers.org/rest
		Removed:
			Other|http://www.ebi.ac.uk/miriam/main/mdb?section=ws_help
			REST|http://www.ebi.ac.uk/miriamws/main/rest/

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'sarala' at 10:14, 23 Nov 2017 (approved):

	'name' has been modified:
		Before: Identifiers.org Registry
		After: Sarala Wimalaratne

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'sarala' at 10:13, 23 Nov 2017 (approved):

	'contactName' has been modified:
		Before:
			Nicolas Le Novre
		After:
			Sarala Wimalaratne
		Added:
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'sarala' at 10:13, 23 Nov 2017 (approved):

	'countries' has been modified:
		Before:
			European Union
		After:
			European Union
			United Kingdom
		Added:
			United Kingdom
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'sarala' at 10:12, 23 Nov 2017 (approved):

	'shortname' has been modified:
		Before: Identifiers.org Registry
		After:

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'sarala' at 10:12, 23 Nov 2017 (approved):

	'shortname' has been modified:
		Before: MIRIAM Registry
		After:

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'sarala' at 10:11, 23 Nov 2017 (approved):

	'shortname' has been modified:
		Before: MIRIAM Registry
		After:

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'sarala' at 10:10, 23 Nov 2017 (approved):

	'shortname' has been modified:
		Before: MIRIAM Registry
		After:

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'sarala' at 10:10, 23 Nov 2017 (approved):

	'shortname' has been modified:
		Before: MIRIAM Registry
		After:

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'sarala' at 21:51, 22 Nov 2017 (approved):

	'name' has been modified:
		Before: MIRIAM Registry
		After: Identifiers.org Registry

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'sarala' at 09:41, 22 Nov 2017 (approved):

	'name' has been modified:
		Before: MIRIAM Registry
		After: Identifiers.org Registry

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'sarala' at 15:39, 21 Nov 2017 (approved):

	'name' has been modified:
		Before: MIRIAM Registry
		After: Identifiers.org Registry

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'sarala' at 15:39, 21 Nov 2017 (approved):

	'name' has been modified:
		Before: MIRIAM Registry
		After: Identifiers.org Registry

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'sarala' at 15:36, 21 Nov 2017 (approved):

	'name' has been modified:
		Before: MIRIAM Registry
		After: Identifiers.org Registry

Edits to 'https://fairsharing.org/FAIRsharing.n14rc8' by 'The FAIRsharing Team' at 13:07, 25 Sep 2016 (approved):

	'contactName' has been modified:
		Before:
			
		After:
			Nicolas Le Novre
		Added:
		Removed:

Support

General

FAQ	Identifiers.org FAQ
support email	Identifiers.org Helpdesk
online documentation	Documentation
twitter	@IdentifiersOrg

Additional Information

Contact	Sarala Wimalaratne ORCID
Identifiers.org	MIR:00000599

Tools

SPARQL Endpoint	https://identifiers.org/services/sparql
.info service	https://identifiers.org/info

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Creative Commons Attribution 4.0 International (CC BY 4.0)

Data Release

continuous release (live database)

https://n2t.net/ark:/13030/c7xk84q2j

Data Curation

Request a prefix

https://identifiers.org/request/prefix

Data Access

Download	https://identifiers.org/download
Browse	https://www.ebi.ac.uk/miriam/main/collections
Search	https://identifiers.org/search

REST Web Services

Identifiers.org Registry service

https://identifiers.org/restws

Publications

MIRIAM Resources: tools to generate and resolve robust cross-references in Systems Biology.

Laibe C., Le Novere N.,
BMC Syst Biol 2007

View Paper (PubMed) View Publication

Identifiers.org and MIRIAM Registry: community resources to provide persistent identification.

Juty N,Le Novere N,Laibe C
Nucleic Acids Res 2011

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

Minimal Information Required In the Annotation of Models

Terminology Artifacts

No semantic standards defined

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Pathway Commons

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by sarala

Funds

Biotechnology and Biological Sciences Research Council (BBSRC), UK (Government body)
Open PHACTS (Consortium)
European Molecular Biology Laboratory (EMBL), Heidelberg, Germany (Government body)
National Institute of General Medical Sciences (NIGMS), Bethesda, MD, USA (Government body)

Maintains

ELIXIR-Hub, UK (Government body)
European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK (Research institute) Lead

Grant Number(s)

BB/E005748/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)
JPA 1729 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)

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