ready Nucleic Acid Phylogenetic Profile

Abbreviation:NAPP

General Information
NAPP (Nucleic Acids Phylogenetic Profile) enables users to retrieve RNA-rich clusters from any genome in a list of 1000+ sequenced bacterial genomes. RNA-rich clusters can be viewed separately or, alternatively, all tiles from RNA-rich clusters can be contiged into larger elements and retrieved at once as a CSV or GFF file for use in a genome browser or comparison with other predictions/RNA-seq experiments.

How to cite this record FAIRsharing.org; DOI: https://doi.org/10.25504/FAIRsharing.vr52p3; Last edited: Feb. 22, 2018, 2:43 p.m.; Last accessed: Feb 24 2018 3:55 a.m.




Record updated: Sept. 26, 2016, 11:11 a.m. by The FAIRsharing Team.


Support

General

Additional Information


Tools

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Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Versioning

Data Release

Data Curation

Data Access




Publications

Single-pass classification of all noncoding sequences in a bacterial genome using phylogenetic profiles.

Marchais A., Naville M., Bohn C., Bouloc P., Gautheret D.,
Genome Res. 2009

View Paper (PubMed) View Paper (DOI)

NAPP: the Nucleic Acid Phylogenetic Profile Database.

Ott A,Idali A,Marchais A,Gautheret D
Nucleic Acids Res 2011

View Paper (PubMed) View Paper (DOI)

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Grant Number(s)

  • ANR-06-MIME-016-01 (ANR)