Databases > DOI:10.25504/FAIRsharing.vr52p3
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ready Nucleic Acid Phylogenetic Profile

Abbreviation:NAPP

General Information
NAPP (Nucleic Acids Phylogenetic Profile) enables users to retrieve RNA-rich clusters from any genome in a list of 1000+ sequenced bacterial genomes. RNA-rich clusters can be viewed separately or, alternatively, all tiles from RNA-rich clusters can be contiged into larger elements and retrieved at once as a CSV or GFF file for use in a genome browser or comparison with other predictions/RNA-seq experiments.

How to cite this record: FAIRsharing.org: NAPP; Nucleic Acid Phylogenetic Profile; DOI: https://doi.org/10.25504/FAIRsharing.vr52p3; Last edited: Feb. 22, 2018, 2:43 p.m.; Last accessed: Apr 20 2018 1:50 p.m.

Homepage http://napp.u-psud.fr

Developed in France

Created in 2011

Taxonomic range





Record updated: Sept. 26, 2016, 11:11 a.m. by The FAIRsharing Team.


Support

General

support email napp.biologie@u-psud.fr
wikipedia https://en.wikipedia.org/wiki/NAPP_(Data ...

Additional Information

Contact Daniel Gautheret   ORCID
Identifiers.org MIR:00000247

Tools

    No tools defined


Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Versioning

file download(CSV) http://rna.igmors.u-psud.fr/download/
MySQL database dump http://rna.igmors.u-psud.fr/download/NAPP/

Data Release

manual curation No link recorded

Data Curation

versioning by date No link recorded

Data Access

access to historical files available upon request No link recorded
search http://napp.u-psud.fr/



Publications

Single-pass classification of all noncoding sequences in a bacterial genome using phylogenetic profiles.

Marchais A., Naville M., Bohn C., Bouloc P., Gautheret D.,
Genome Res. 2009

View Paper (PubMed) View Paper (DOI)

NAPP: the Nucleic Acid Phylogenetic Profile Database.

Ott A,Idali A,Marchais A,Gautheret D
Nucleic Acids Res 2011

View Paper (PubMed) View Paper (DOI)

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats


Related Databases

No related databases defined


Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

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Funds

Maintains

Grant Number(s)

  • ANR-06-MIME-016-01 (ANR)